EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPAG00000037953 (Gene tree)
Gene ID: 100978757
Gene Symbol: UPF2
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Minus strand
Length: 103868 bases
Position: chr10:11916893-12020760
Accession: 100978757
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000029911	Upf2	PF04050.14	1.2e-32	1	1
ENSPPAP00000029911	MIF4G	PF02854.19	3e-78	1	3
ENSPPAP00000029911	MIF4G	PF02854.19	3e-78	2	3
ENSPPAP00000029911	MIF4G	PF02854.19	3e-78	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000052765	UPF2-201	3774	XM_008953147	ENSPPAP00000029911	1257 (aa)	XP_008951395	A0A2R9BTK4

Gene Model

Click here to download ENSPPAG00000037953's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps03013	RNA transport	KEGG
pps03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000037953's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000037953	UPF2	100	96.325	ENSG00000151461	UPF2	99	96.325	Homo_sapiens
ENSPPAG00000037953	UPF2	100	75.529	ENSAPOG00000015837	UPF2	100	76.457	Acanthochromis_polyacanthus
ENSPPAG00000037953	UPF2	100	94.567	ENSAMEG00000004586	UPF2	99	93.823	Ailuropoda_melanoleuca
ENSPPAG00000037953	UPF2	100	79.859	ENSACIG00000018078	UPF2	100	79.875	Amphilophus_citrinellus
ENSPPAG00000037953	UPF2	100	79.547	ENSAOCG00000016766	UPF2	100	79.213	Amphiprion_ocellaris
ENSPPAG00000037953	UPF2	100	79.625	ENSAPEG00000019084	UPF2	100	79.291	Amphiprion_percula
ENSPPAG00000037953	UPF2	100	79.689	ENSATEG00000021677	UPF2	99	78.000	Anabas_testudineus
ENSPPAG00000037953	UPF2	100	85.103	ENSAPLG00000010287	UPF2	99	83.803	Anas_platyrhynchos
ENSPPAG00000037953	UPF2	100	89.055	ENSACAG00000009259	UPF2	99	88.585	Anolis_carolinensis
ENSPPAG00000037953	UPF2	100	85.456	ENSANAG00000028451	UPF2	99	83.450	Aotus_nancymaae
ENSPPAG00000037953	UPF2	100	78.298	ENSACLG00000012696	UPF2	99	80.109	Astatotilapia_calliptera
ENSPPAG00000037953	UPF2	100	80.312	ENSAMXG00000013700	UPF2	99	79.876	Astyanax_mexicanus
ENSPPAG00000037953	UPF2	100	94.409	ENSBTAG00000000288	UPF2	99	93.667	Bos_taurus
ENSPPAG00000037953	UPF2	100	96.513	ENSCJAG00000020685	UPF2	99	96.513	Callithrix_jacchus
ENSPPAG00000037953	UPF2	100	94.488	ENSCAFG00000004839	UPF2	99	93.745	Canis_familiaris
ENSPPAG00000037953	UPF2	100	95.563	ENSCAFG00020005882	UPF2	100	95.563	Canis_lupus_dingo
ENSPPAG00000037953	UPF2	100	94.488	ENSCHIG00000020359	UPF2	99	93.745	Capra_hircus
ENSPPAG00000037953	UPF2	100	95.087	ENSTSYG00000000935	UPF2	100	95.087	Carlito_syrichta
ENSPPAG00000037953	UPF2	91	83.749	ENSCAPG00000016658	UPF2	100	82.253	Cavia_aperea
ENSPPAG00000037953	UPF2	99	90.808	ENSCPOG00000008809	UPF2	99	90.873	Cavia_porcellus
ENSPPAG00000037953	UPF2	100	90.427	ENSCCAG00000035991	UPF2	99	92.265	Cebus_capucinus
ENSPPAG00000037953	UPF2	100	98.970	ENSCATG00000032679	UPF2	100	98.970	Cercocebus_atys
ENSPPAG00000037953	UPF2	100	92.441	ENSCLAG00000011434	UPF2	99	92.494	Chinchilla_lanigera
ENSPPAG00000037953	UPF2	100	96.013	ENSCSAG00000013372	UPF2	99	96.013	Chlorocebus_sabaeus
ENSPPAG00000037953	UPF2	82	99.429	ENSCHOG00000000422	UPF2	89	99.330	Choloepus_hoffmanni
ENSPPAG00000037953	UPF2	100	89.699	ENSCPBG00000027823	UPF2	100	89.108	Chrysemys_picta_bellii
ENSPPAG00000037953	UPF2	78	48.320	ENSCSAVG00000007772	-	79	49.809	Ciona_savignyi
ENSPPAG00000037953	UPF2	100	95.724	ENSCANG00000040396	UPF2	100	95.724	Colobus_angolensis_palliatus
ENSPPAG00000037953	UPF2	100	94.326	ENSCGRG00001019347	Upf2	99	93.584	Cricetulus_griseus_chok1gshd
ENSPPAG00000037953	UPF2	100	94.326	ENSCGRG00000017993	Upf2	99	93.584	Cricetulus_griseus_crigri
ENSPPAG00000037953	UPF2	91	77.778	ENSCSEG00000003520	UPF2	72	82.210	Cynoglossus_semilaevis
ENSPPAG00000037953	UPF2	99	79.481	ENSCVAG00000006167	UPF2	100	79.340	Cyprinodon_variegatus
ENSPPAG00000037953	UPF2	100	94.567	ENSDNOG00000018160	UPF2	99	93.823	Dasypus_novemcinctus
ENSPPAG00000037953	UPF2	100	93.932	ENSDORG00000002478	Upf2	99	93.192	Dipodomys_ordii
ENSPPAG00000037953	UPF2	89	35.667	FBgn0029992	Upf2	82	43.860	Drosophila_melanogaster
ENSPPAG00000037953	UPF2	67	100.000	ENSETEG00000011583	-	65	100.000	Echinops_telfairi
ENSPPAG00000037953	UPF2	65	72.483	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSPPAG00000037953	UPF2	100	92.992	ENSEASG00005019274	UPF2	99	96.853	Equus_asinus_asinus
ENSPPAG00000037953	UPF2	100	93.307	ENSECAG00000017022	UPF2	99	93.354	Equus_caballus
ENSPPAG00000037953	UPF2	82	84.566	ENSEEUG00000007819	UPF2	82	81.875	Erinaceus_europaeus
ENSPPAG00000037953	UPF2	100	78.984	ENSELUG00000012014	UPF2	99	78.193	Esox_lucius
ENSPPAG00000037953	UPF2	98	99.457	ENSFCAG00000005785	UPF2	99	93.667	Felis_catus
ENSPPAG00000037953	UPF2	100	88.268	ENSFALG00000001889	UPF2	98	89.367	Ficedula_albicollis
ENSPPAG00000037953	UPF2	100	92.514	ENSFDAG00000014348	UPF2	99	92.567	Fukomys_damarensis
ENSPPAG00000037953	UPF2	99	79.685	ENSFHEG00000009826	UPF2	99	79.622	Fundulus_heteroclitus
ENSPPAG00000037953	UPF2	91	81.255	ENSGMOG00000005557	UPF2	100	78.288	Gadus_morhua
ENSPPAG00000037953	UPF2	100	90.244	ENSGALG00000033772	UPF2	99	89.531	Gallus_gallus
ENSPPAG00000037953	UPF2	100	76.893	ENSGAFG00000020867	UPF2	99	79.017	Gambusia_affinis
ENSPPAG00000037953	UPF2	90	81.622	ENSGACG00000001080	UPF2	100	79.225	Gasterosteus_aculeatus
ENSPPAG00000037953	UPF2	100	89.445	ENSGAGG00000002700	UPF2	99	89.210	Gopherus_agassizii
ENSPPAG00000037953	UPF2	100	99.287	ENSGGOG00000001479	UPF2	100	99.287	Gorilla_gorilla
ENSPPAG00000037953	UPF2	100	78.298	ENSHBUG00000004249	UPF2	100	80.109	Haplochromis_burtoni
ENSPPAG00000037953	UPF2	100	82.756	ENSHGLG00000003822	-	99	81.392	Heterocephalus_glaber_female
ENSPPAG00000037953	UPF2	100	92.598	ENSHGLG00000015176	-	99	92.494	Heterocephalus_glaber_female
ENSPPAG00000037953	UPF2	100	90.071	ENSHGLG00100010036	UPF2	100	90.297	Heterocephalus_glaber_male
ENSPPAG00000037953	UPF2	100	78.011	ENSHCOG00000004025	UPF2	99	78.322	Hippocampus_comes
ENSPPAG00000037953	UPF2	100	94.326	ENSSTOG00000013075	UPF2	99	93.584	Ictidomys_tridecemlineatus
ENSPPAG00000037953	UPF2	100	92.908	ENSJJAG00000004913	Upf2	99	92.175	Jaculus_jaculus
ENSPPAG00000037953	UPF2	99	79.389	ENSKMAG00000001071	UPF2	99	79.407	Kryptolebias_marmoratus
ENSPPAG00000037953	UPF2	80	81.452	ENSLBEG00000000728	-	93	81.551	Labrus_bergylta
ENSPPAG00000037953	UPF2	100	79.938	ENSLBEG00000016394	-	99	80.156	Labrus_bergylta
ENSPPAG00000037953	UPF2	91	80.637	ENSLACG00000015945	UPF2	100	79.075	Latimeria_chalumnae
ENSPPAG00000037953	UPF2	91	85.690	ENSLOCG00000015698	UPF2	99	83.294	Lepisosteus_oculatus
ENSPPAG00000037953	UPF2	100	96.910	ENSMFAG00000043865	UPF2	100	96.910	Macaca_fascicularis
ENSPPAG00000037953	UPF2	100	95.856	ENSMMUG00000008241	UPF2	99	95.856	Macaca_mulatta
ENSPPAG00000037953	UPF2	81	98.537	ENSMNEG00000008062	UPF2	100	98.537	Macaca_nemestrina
ENSPPAG00000037953	UPF2	100	98.970	ENSMLEG00000036120	UPF2	100	98.970	Mandrillus_leucophaeus
ENSPPAG00000037953	UPF2	100	79.300	ENSMAMG00000018276	UPF2	99	77.632	Mastacembelus_armatus
ENSPPAG00000037953	UPF2	100	78.298	ENSMZEG00005021595	UPF2	99	80.109	Maylandia_zebra
ENSPPAG00000037953	UPF2	99	89.519	ENSMGAG00000004573	UPF2	99	89.045	Meleagris_gallopavo
ENSPPAG00000037953	UPF2	100	91.962	ENSMAUG00000016512	Upf2	99	91.236	Mesocricetus_auratus
ENSPPAG00000037953	UPF2	100	91.521	ENSMICG00000001716	UPF2	100	91.997	Microcebus_murinus
ENSPPAG00000037953	UPF2	100	92.356	ENSMOCG00000008263	Upf2	99	92.723	Microtus_ochrogaster
ENSPPAG00000037953	UPF2	90	81.397	ENSMMOG00000006528	UPF2	100	78.819	Mola_mola
ENSPPAG00000037953	UPF2	100	92.362	ENSMODG00000016794	UPF2	99	91.634	Monodelphis_domestica
ENSPPAG00000037953	UPF2	100	79.219	ENSMALG00000002663	UPF2	100	79.560	Monopterus_albus
ENSPPAG00000037953	UPF2	100	93.932	MGP_CAROLIEiJ_G0023157	Upf2	99	93.831	Mus_caroli
ENSPPAG00000037953	UPF2	100	94.247	ENSMUSG00000043241	Upf2	99	93.505	Mus_musculus
ENSPPAG00000037953	UPF2	100	93.853	MGP_PahariEiJ_G0019217	Upf2	99	93.192	Mus_pahari
ENSPPAG00000037953	UPF2	100	94.484	MGP_SPRETEiJ_G0024075	Upf2	99	93.740	Mus_spretus
ENSPPAG00000037953	UPF2	100	94.488	ENSMPUG00000001064	UPF2	99	93.745	Mustela_putorius_furo
ENSPPAG00000037953	UPF2	100	93.250	ENSMLUG00000000228	UPF2	100	92.829	Myotis_lucifugus
ENSPPAG00000037953	UPF2	100	78.298	ENSNBRG00000013629	UPF2	99	80.109	Neolamprologus_brichardi
ENSPPAG00000037953	UPF2	100	96.910	ENSNLEG00000012058	UPF2	100	96.910	Nomascus_leucogenys
ENSPPAG00000037953	UPF2	62	97.927	ENSMEUG00000002180	-	59	97.927	Notamacropus_eugenii
ENSPPAG00000037953	UPF2	76	100.000	ENSOPRG00000006801	-	77	100.000	Ochotona_princeps
ENSPPAG00000037953	UPF2	100	91.575	ENSODEG00000001290	UPF2	99	92.103	Octodon_degus
ENSPPAG00000037953	UPF2	100	78.376	ENSONIG00000017991	UPF2	99	80.187	Oreochromis_niloticus
ENSPPAG00000037953	UPF2	100	93.031	ENSOCUG00000006230	UPF2	100	92.613	Oryctolagus_cuniculus
ENSPPAG00000037953	UPF2	100	79.423	ENSORLG00000017189	UPF2	99	79.922	Oryzias_latipes
ENSPPAG00000037953	UPF2	100	79.423	ENSORLG00020005969	UPF2	99	79.922	Oryzias_latipes_hni
ENSPPAG00000037953	UPF2	100	79.423	ENSORLG00015005713	UPF2	99	79.922	Oryzias_latipes_hsok
ENSPPAG00000037953	UPF2	100	76.586	ENSOMEG00000023420	UPF2	98	76.719	Oryzias_melastigma
ENSPPAG00000037953	UPF2	100	95.039	ENSOGAG00000005796	UPF2	99	94.292	Otolemur_garnettii
ENSPPAG00000037953	UPF2	100	94.340	ENSOARG00000014587	UPF2	99	93.599	Ovis_aries
ENSPPAG00000037953	UPF2	100	94.331	ENSPPRG00000000690	UPF2	99	93.667	Panthera_pardus
ENSPPAG00000037953	UPF2	100	94.331	ENSPTIG00000008867	UPF2	99	93.667	Panthera_tigris_altaica
ENSPPAG00000037953	UPF2	100	99.287	ENSPTRG00000002291	UPF2	100	99.287	Pan_troglodytes
ENSPPAG00000037953	UPF2	100	98.891	ENSPANG00000023399	UPF2	100	98.891	Papio_anubis
ENSPPAG00000037953	UPF2	100	78.438	ENSPKIG00000025502	UPF2	99	79.641	Paramormyrops_kingsleyae
ENSPPAG00000037953	UPF2	60	91.247	ENSPSIG00000015158	UPF2	95	91.247	Pelodiscus_sinensis
ENSPPAG00000037953	UPF2	93	93.605	ENSPEMG00000015731	Upf2	99	93.605	Peromyscus_maniculatus_bairdii
ENSPPAG00000037953	UPF2	100	90.000	ENSPCIG00000006656	UPF2	100	91.321	Phascolarctos_cinereus
ENSPPAG00000037953	UPF2	100	77.241	ENSPFOG00000017118	UPF2	99	79.407	Poecilia_formosa
ENSPPAG00000037953	UPF2	100	77.241	ENSPLAG00000005094	UPF2	99	79.407	Poecilia_latipinna
ENSPPAG00000037953	UPF2	100	77.241	ENSPMEG00000017009	UPF2	99	79.407	Poecilia_mexicana
ENSPPAG00000037953	UPF2	100	77.230	ENSPREG00000021880	UPF2	100	79.254	Poecilia_reticulata
ENSPPAG00000037953	UPF2	65	94.844	ENSPPYG00000002089	-	99	93.713	Pongo_abelii
ENSPPAG00000037953	UPF2	100	80.157	ENSPCAG00000000684	UPF2	99	79.515	Procavia_capensis
ENSPPAG00000037953	UPF2	100	95.483	ENSPCOG00000021656	UPF2	100	95.483	Propithecus_coquereli
ENSPPAG00000037953	UPF2	100	86.467	ENSPVAG00000017286	UPF2	99	86.484	Pteropus_vampyrus
ENSPPAG00000037953	UPF2	100	75.878	ENSPNYG00000017096	UPF2	100	77.691	Pundamilia_nyererei
ENSPPAG00000037953	UPF2	100	80.625	ENSPNAG00000009357	UPF2	99	79.907	Pygocentrus_nattereri
ENSPPAG00000037953	UPF2	100	88.148	ENSRNOG00000023593	Upf2	98	100.000	Rattus_norvegicus
ENSPPAG00000037953	UPF2	100	97.781	ENSRBIG00000037780	UPF2	100	97.781	Rhinopithecus_bieti
ENSPPAG00000037953	UPF2	100	98.811	ENSRROG00000043547	UPF2	100	98.811	Rhinopithecus_roxellana
ENSPPAG00000037953	UPF2	100	96.117	ENSSBOG00000020012	UPF2	99	96.117	Saimiri_boliviensis_boliviensis
ENSPPAG00000037953	UPF2	100	79.251	ENSSFOG00015023788	upf2	100	79.751	Scleropages_formosus
ENSPPAG00000037953	UPF2	90	79.532	ENSSMAG00000007637	UPF2	100	77.367	Scophthalmus_maximus
ENSPPAG00000037953	UPF2	100	79.001	ENSSDUG00000017244	UPF2	100	79.291	Seriola_dumerili
ENSPPAG00000037953	UPF2	100	78.774	ENSSLDG00000016866	UPF2	82	83.104	Seriola_lalandi_dorsalis
ENSPPAG00000037953	UPF2	100	92.205	ENSSARG00000008615	UPF2	99	91.556	Sorex_araneus
ENSPPAG00000037953	UPF2	100	86.457	ENSSPUG00000014544	UPF2	99	86.239	Sphenodon_punctatus
ENSPPAG00000037953	UPF2	68	94.233	ENSSSCG00000011117	-	99	93.151	Sus_scrofa
ENSPPAG00000037953	UPF2	99	88.337	ENSTGUG00000002163	-	100	89.515	Taeniopygia_guttata
ENSPPAG00000037953	UPF2	100	79.034	ENSTRUG00000007519	UPF2	99	79.563	Takifugu_rubripes
ENSPPAG00000037953	UPF2	100	77.778	ENSTNIG00000004453	UPF2	99	77.666	Tetraodon_nigroviridis
ENSPPAG00000037953	UPF2	93	87.384	ENSTBEG00000012679	UPF2	93	86.639	Tupaia_belangeri
ENSPPAG00000037953	UPF2	100	92.756	ENSTTRG00000016388	UPF2	99	93.198	Tursiops_truncatus
ENSPPAG00000037953	UPF2	100	92.472	ENSUAMG00000023560	UPF2	99	100.000	Ursus_americanus
ENSPPAG00000037953	UPF2	100	94.724	ENSUMAG00000012953	UPF2	95	93.980	Ursus_maritimus
ENSPPAG00000037953	UPF2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSPPAG00000037953	UPF2	100	94.409	ENSVVUG00000006166	UPF2	99	93.667	Vulpes_vulpes
ENSPPAG00000037953	UPF2	100	82.399	ENSXETG00000033103	UPF2	91	88.042	Xenopus_tropicalis
ENSPPAG00000037953	UPF2	92	81.671	ENSXCOG00000011604	UPF2	100	79.095	Xiphophorus_couchianus
ENSPPAG00000037953	UPF2	92	81.841	ENSXMAG00000017209	UPF2	99	79.095	Xiphophorus_maculatus