EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPAG00000039068 (Gene tree)
Gene ID: 100974418
Gene Symbol: YBX3
Alias: -
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Minus strand
Length: 21793 bases
Position: chr12:10996380-11018172
Accession: 100974418
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000032384	CSD	PF00313.22	6e-26	1	1
ENSPPAP00000032380	CSD	PF00313.22	7e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000055247	YBX3-201	1080	XM_008954972	ENSPPAP00000032380	359 (aa)	XP_008953220	A0A2R9BV96
ENSPPAT00000055251	YBX3-202	873	-	ENSPPAP00000032384	290 (aa)	-	A0A2R9C0V1

Gene Model

Click here to download ENSPPAG00000039068's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000039068's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPAG00000039068	YBX3	82	55.000	ENSPPAG00000028526	-	85	53.659

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000039068	YBX3	100	92.742	ENSG00000060138	YBX3	100	92.742	Homo_sapiens
ENSPPAG00000039068	YBX3	81	92.759	ENSAMEG00000009393	YBX3	83	92.440	Ailuropoda_melanoleuca
ENSPPAG00000039068	YBX3	79	64.685	ENSAPLG00000003147	YBX3	70	100.000	Anas_platyrhynchos
ENSPPAG00000039068	YBX3	100	68.243	ENSANAG00000033366	-	93	86.923	Aotus_nancymaae
ENSPPAG00000039068	YBX3	87	97.749	ENSANAG00000024492	-	98	97.749	Aotus_nancymaae
ENSPPAG00000039068	YBX3	100	79.319	ENSBTAG00000009663	YBX3	77	86.689	Bos_taurus
ENSPPAG00000039068	YBX3	96	68.953	ENSCJAG00000033824	-	98	91.892	Callithrix_jacchus
ENSPPAG00000039068	YBX3	82	97.627	ENSCJAG00000021660	-	100	90.054	Callithrix_jacchus
ENSPPAG00000039068	YBX3	80	92.361	ENSCAFG00000013401	YBX3	100	92.202	Canis_familiaris
ENSPPAG00000039068	YBX3	82	90.444	ENSCAFG00020006412	YBX3	100	79.467	Canis_lupus_dingo
ENSPPAG00000039068	YBX3	100	79.319	ENSCHIG00000010863	YBX3	100	79.404	Capra_hircus
ENSPPAG00000039068	YBX3	100	71.711	ENSTSYG00000035821	-	97	80.357	Carlito_syrichta
ENSPPAG00000039068	YBX3	80	94.774	ENSTSYG00000004204	-	88	94.774	Carlito_syrichta
ENSPPAG00000039068	YBX3	80	86.760	ENSCAPG00000015039	YBX3	93	86.760	Cavia_aperea
ENSPPAG00000039068	YBX3	82	87.713	ENSCPOG00000011329	YBX3	86	87.713	Cavia_porcellus
ENSPPAG00000039068	YBX3	82	97.627	ENSCCAG00000016469	YBX3	100	90.591	Cebus_capucinus
ENSPPAG00000039068	YBX3	100	91.421	ENSCATG00000034411	YBX3	100	91.421	Cercocebus_atys
ENSPPAG00000039068	YBX3	80	87.108	ENSCLAG00000016030	YBX3	94	87.108	Chinchilla_lanigera
ENSPPAG00000039068	YBX3	100	91.957	ENSCSAG00000008744	YBX3	100	91.957	Chlorocebus_sabaeus
ENSPPAG00000039068	YBX3	94	74.419	ENSCHOG00000011988	YBX3	54	92.593	Choloepus_hoffmanni
ENSPPAG00000039068	YBX3	81	79.381	ENSCPBG00000014147	YBX3	81	78.840	Chrysemys_picta_bellii
ENSPPAG00000039068	YBX3	87	97.749	ENSCANG00000036801	YBX3	99	97.749	Colobus_angolensis_palliatus
ENSPPAG00000039068	YBX3	82	92.568	ENSCGRG00001016148	Ybx3	80	91.126	Cricetulus_griseus_chok1gshd
ENSPPAG00000039068	YBX3	80	90.753	ENSCGRG00000004563	Ybx3	98	89.384	Cricetulus_griseus_crigri
ENSPPAG00000039068	YBX3	79	91.228	ENSDORG00000009103	Ybx3	81	90.592	Dipodomys_ordii
ENSPPAG00000039068	YBX3	79	85.315	ENSETEG00000002557	YBX3	99	84.155	Echinops_telfairi
ENSPPAG00000039068	YBX3	82	87.458	ENSEASG00005014726	YBX3	97	84.112	Equus_asinus_asinus
ENSPPAG00000039068	YBX3	82	91.186	ENSECAG00000013777	YBX3	100	81.941	Equus_caballus
ENSPPAG00000039068	YBX3	79	92.254	ENSEEUG00000010415	YBX3	100	92.254	Erinaceus_europaeus
ENSPPAG00000039068	YBX3	82	95.254	ENSFCAG00000027748	YBX3	100	85.791	Felis_catus
ENSPPAG00000039068	YBX3	74	94.444	ENSFALG00000003661	YBX3	71	98.837	Ficedula_albicollis
ENSPPAG00000039068	YBX3	80	85.366	ENSFDAG00000021192	YBX3	92	84.321	Fukomys_damarensis
ENSPPAG00000039068	YBX3	76	82.727	ENSGALG00000031890	YBX3	70	97.849	Gallus_gallus
ENSPPAG00000039068	YBX3	81	79.038	ENSGAGG00000017780	YBX3	77	82.960	Gopherus_agassizii
ENSPPAG00000039068	YBX3	100	92.493	ENSGGOG00000001352	YBX3	100	92.493	Gorilla_gorilla
ENSPPAG00000039068	YBX3	76	79.273	ENSHGLG00000015495	-	80	76.557	Heterocephalus_glaber_female
ENSPPAG00000039068	YBX3	84	75.490	ENSHGLG00000014798	-	86	76.431	Heterocephalus_glaber_female
ENSPPAG00000039068	YBX3	75	88.532	ENSHGLG00100003589	YBX3	87	88.532	Heterocephalus_glaber_male
ENSPPAG00000039068	YBX3	82	89.153	ENSSTOG00000032577	-	83	88.055	Ictidomys_tridecemlineatus
ENSPPAG00000039068	YBX3	80	86.411	ENSSTOG00000002108	-	88	86.411	Ictidomys_tridecemlineatus
ENSPPAG00000039068	YBX3	82	69.024	ENSJJAG00000014239	Ybx3	95	86.047	Jaculus_jaculus
ENSPPAG00000039068	YBX3	100	85.175	ENSLAFG00000017247	YBX3	100	84.097	Loxodonta_africana
ENSPPAG00000039068	YBX3	100	91.667	ENSMFAG00000039369	YBX3	100	91.667	Macaca_fascicularis
ENSPPAG00000039068	YBX3	87	98.071	ENSMMUG00000022469	YBX3	96	98.071	Macaca_mulatta
ENSPPAG00000039068	YBX3	100	91.667	ENSMNEG00000045109	YBX3	100	91.667	Macaca_nemestrina
ENSPPAG00000039068	YBX3	80	98.606	ENSMLEG00000033618	YBX3	79	98.606	Mandrillus_leucophaeus
ENSPPAG00000039068	YBX3	73	98.095	ENSMGAG00000014224	YBX3	93	100.000	Meleagris_gallopavo
ENSPPAG00000039068	YBX3	82	91.892	ENSMAUG00000012185	Ybx3	91	90.444	Mesocricetus_auratus
ENSPPAG00000039068	YBX3	100	73.793	ENSMICG00000031459	-	100	69.728	Microcebus_murinus
ENSPPAG00000039068	YBX3	100	84.906	ENSMICG00000038002	-	100	84.906	Microcebus_murinus
ENSPPAG00000039068	YBX3	87	88.854	ENSMOCG00000016291	Ybx3	95	91.126	Microtus_ochrogaster
ENSPPAG00000039068	YBX3	80	83.333	ENSMODG00000018248	YBX3	91	84.028	Monodelphis_domestica
ENSPPAG00000039068	YBX3	82	91.554	MGP_CAROLIEiJ_G0028947	Ybx3	100	81.096	Mus_caroli
ENSPPAG00000039068	YBX3	82	91.554	ENSMUSG00000030189	Ybx3	100	81.096	Mus_musculus
ENSPPAG00000039068	YBX3	82	92.230	MGP_PahariEiJ_G0022709	Ybx3	100	81.644	Mus_pahari
ENSPPAG00000039068	YBX3	82	91.892	MGP_SPRETEiJ_G0029994	Ybx3	100	81.370	Mus_spretus
ENSPPAG00000039068	YBX3	82	78.405	ENSMPUG00000011810	YBX3	100	71.842	Mustela_putorius_furo
ENSPPAG00000039068	YBX3	74	93.309	ENSMLUG00000007476	YBX3	100	91.450	Myotis_lucifugus
ENSPPAG00000039068	YBX3	82	85.859	ENSNGAG00000000710	Ybx3	90	83.628	Nannospalax_galili
ENSPPAG00000039068	YBX3	82	95.593	ENSNLEG00000034844	YBX3	83	95.563	Nomascus_leucogenys
ENSPPAG00000039068	YBX3	78	83.871	ENSODEG00000017957	YBX3	86	82.935	Octodon_degus
ENSPPAG00000039068	YBX3	87	84.345	ENSOCUG00000001889	YBX3	85	87.372	Oryctolagus_cuniculus
ENSPPAG00000039068	YBX3	100	82.540	ENSOGAG00000013245	YBX3	100	82.586	Otolemur_garnettii
ENSPPAG00000039068	YBX3	72	98.980	ENSOARG00000020919	YBX3	99	82.373	Ovis_aries
ENSPPAG00000039068	YBX3	82	94.915	ENSPPRG00000005859	YBX3	100	85.523	Panthera_pardus
ENSPPAG00000039068	YBX3	79	92.982	ENSPTIG00000005322	YBX3	81	92.334	Panthera_tigris_altaica
ENSPPAG00000039068	YBX3	100	92.246	ENSPTRG00000004681	YBX3	100	92.246	Pan_troglodytes
ENSPPAG00000039068	YBX3	100	91.667	ENSPANG00000010280	YBX3	100	91.667	Papio_anubis
ENSPPAG00000039068	YBX3	74	84.259	ENSPSIG00000009247	YBX3	92	100.000	Pelodiscus_sinensis
ENSPPAG00000039068	YBX3	82	91.892	ENSPEMG00000012132	-	92	91.468	Peromyscus_maniculatus_bairdii
ENSPPAG00000039068	YBX3	86	85.375	ENSPEMG00000010391	-	84	91.071	Peromyscus_maniculatus_bairdii
ENSPPAG00000039068	YBX3	72	81.538	ENSPCIG00000029949	YBX3	100	79.615	Phascolarctos_cinereus
ENSPPAG00000039068	YBX3	100	92.204	ENSPPYG00000004279	YBX3	100	92.204	Pongo_abelii
ENSPPAG00000039068	YBX3	57	100.000	ENSPCAG00000001397	YBX3	86	100.000	Procavia_capensis
ENSPPAG00000039068	YBX3	51	91.803	ENSPCOG00000011663	YBX3	100	80.469	Propithecus_coquereli
ENSPPAG00000039068	YBX3	82	78.716	ENSPVAG00000006740	YBX3	77	82.353	Pteropus_vampyrus
ENSPPAG00000039068	YBX3	82	92.905	ENSRNOG00000005480	Ybx3	100	82.192	Rattus_norvegicus
ENSPPAG00000039068	YBX3	100	90.860	ENSRBIG00000039208	YBX3	100	91.398	Rhinopithecus_bieti
ENSPPAG00000039068	YBX3	100	91.398	ENSRROG00000029638	YBX3	100	91.398	Rhinopithecus_roxellana
ENSPPAG00000039068	YBX3	84	94.667	ENSSBOG00000030573	YBX3	86	96.564	Saimiri_boliviensis_boliviensis
ENSPPAG00000039068	YBX3	68	98.837	ENSSHAG00000003262	YBX3	98	80.756	Sarcophilus_harrisii
ENSPPAG00000039068	YBX3	81	94.483	ENSSSCG00000000633	YBX3	100	83.465	Sus_scrofa
ENSPPAG00000039068	YBX3	73	98.077	ENSTGUG00000012047	YBX3	74	98.077	Taeniopygia_guttata
ENSPPAG00000039068	YBX3	86	92.508	ENSTBEG00000012570	YBX3	81	94.539	Tupaia_belangeri
ENSPPAG00000039068	YBX3	73	84.586	ENSTTRG00000008045	YBX3	100	84.586	Tursiops_truncatus
ENSPPAG00000039068	YBX3	77	88.849	ENSUAMG00000016662	YBX3	100	88.489	Ursus_americanus
ENSPPAG00000039068	YBX3	79	91.579	ENSUMAG00000016118	YBX3	94	91.638	Ursus_maritimus
ENSPPAG00000039068	YBX3	60	100.000	ENSVPAG00000000876	YBX3	100	72.535	Vicugna_pacos
ENSPPAG00000039068	YBX3	77	89.209	ENSVVUG00000004956	YBX3	100	89.209	Vulpes_vulpes
ENSPPAG00000039068	YBX3	76	72.072	ENSXETG00000016239	ybx3	90	68.304	Xenopus_tropicalis