EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPAG00000040674 (Gene tree)
Gene ID: 103784213
Gene Symbol: TRIM39
Alias: -
Full Name: tripartite motif containing 39
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Plus strand
Length: 20505 bases
Position: chr6:30975260-30995764
Accession: 100978063
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000035839	Rpr2	PF04032.16	5.3e-17	1	1
ENSPPAP00000035835	Rpr2	PF04032.16	2e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000058705	TRIM39-201	3523	XM_008959480	ENSPPAP00000035816	488 (aa)	XP_008957728	A0A2R9C4L4
ENSPPAT00000058724	TRIM39-203	1512	-	ENSPPAP00000035835	503 (aa)	-	A0A2R9CBX1
ENSPPAT00000058706	TRIM39-202	3257	XM_014345287	ENSPPAP00000035817	518 (aa)	XP_014200773	A0A2R9C250
ENSPPAT00000058728	TRIM39-204	573	XM_008959482	ENSPPAP00000035839	162 (aa)	XP_008957730	A0A2R9C1P7

Gene Model

Click here to download ENSPPAG00000040674's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000040674's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000040674	TRIM39	100	98.211	ENSANAG00000032075	TRIM39	100	98.211	Aotus_nancymaae
ENSPPAG00000040674	TRIM39	100	97.614	ENSCJAG00000020681	TRIM39	100	97.614	Callithrix_jacchus
ENSPPAG00000040674	TRIM39	100	98.012	ENSCCAG00000036784	TRIM39	100	98.012	Cebus_capucinus
ENSPPAG00000040674	TRIM39	100	98.807	ENSCATG00000044044	TRIM39	100	98.807	Cercocebus_atys
ENSPPAG00000040674	TRIM39	100	99.801	ENSGGOG00000016403	TRIM39	100	99.801	Gorilla_gorilla
ENSPPAG00000040674	TRIM39	100	99.006	ENSMFAG00000046182	TRIM39	100	99.006	Macaca_fascicularis
ENSPPAG00000040674	TRIM39	100	99.006	ENSMMUG00000011682	RPP21	100	99.006	Macaca_mulatta
ENSPPAG00000040674	TRIM39	100	98.807	ENSMNEG00000034999	TRIM39	100	98.807	Macaca_nemestrina
ENSPPAG00000040674	TRIM39	100	99.006	ENSMLEG00000034263	TRIM39	100	99.006	Mandrillus_leucophaeus
ENSPPAG00000040674	TRIM39	100	99.602	ENSNLEG00000005026	TRIM39	100	99.602	Nomascus_leucogenys
ENSPPAG00000040674	TRIM39	100	100.000	ENSPTRG00000017923	TRIM39	100	100.000	Pan_troglodytes
ENSPPAG00000040674	TRIM39	100	98.807	ENSPANG00000000655	TRIM39	100	98.807	Papio_anubis
ENSPPAG00000040674	TRIM39	100	99.205	ENSRBIG00000040889	TRIM39	100	99.205	Rhinopithecus_bieti
ENSPPAG00000040674	TRIM39	100	99.205	ENSRROG00000036496	TRIM39	100	99.205	Rhinopithecus_roxellana