EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPPAG00000042137 (Gene tree)
Gene ID: 100969803
Gene Symbol: USB1
Alias: -
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Plus strand
Length: 21825 bases
Position: chr16:57408841-57430665
Accession: 100969803
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000038854	HVSL	PF09749.9	3.1e-63	1	1
ENSPPAP00000038855	HVSL	PF09749.9	1.7e-51	1	2
ENSPPAP00000038855	HVSL	PF09749.9	1.7e-51	2	2
ENSPPAP00000038860	HVSL	PF09749.9	1.1e-28	1	1
ENSPPAP00000038863	HVSL	PF09749.9	1.9e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000061763	USB1-201	1126	XM_003823714	ENSPPAP00000038854	265 (aa)	XP_003823762	A0A2R9CAG8
ENSPPAT00000061769	USB1-203	477	-	ENSPPAP00000038860	158 (aa)	-	A0A2R9CA77
ENSPPAT00000061772	USB1-204	561	-	ENSPPAP00000038863	186 (aa)	XP_024781643	A0A2R9CCY5
ENSPPAT00000061764	USB1-202	744	-	ENSPPAP00000038855	247 (aa)	-	A0A2R9CA72

Gene Model

Click here to download ENSPPAG00000042137's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000042137's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000042137	USB1	100	98.868	ENSG00000103005	USB1	100	98.868	Homo_sapiens
ENSPPAG00000042137	USB1	98	45.977	ENSAPOG00000011942	usb1	82	50.698	Acanthochromis_polyacanthus
ENSPPAG00000042137	USB1	100	83.271	ENSAMEG00000017205	USB1	100	82.156	Ailuropoda_melanoleuca
ENSPPAG00000042137	USB1	85	53.125	ENSACIG00000012234	usb1	82	53.125	Amphilophus_citrinellus
ENSPPAG00000042137	USB1	95	49.801	ENSAOCG00000014831	usb1	80	53.304	Amphiprion_ocellaris
ENSPPAG00000042137	USB1	95	50.199	ENSAPEG00000000296	usb1	80	53.744	Amphiprion_percula
ENSPPAG00000042137	USB1	95	49.402	ENSATEG00000009348	usb1	82	51.948	Anabas_testudineus
ENSPPAG00000042137	USB1	85	69.604	ENSAPLG00000002756	USB1	100	69.469	Anas_platyrhynchos
ENSPPAG00000042137	USB1	86	63.755	ENSACAG00000015481	USB1	100	63.755	Anolis_carolinensis
ENSPPAG00000042137	USB1	100	96.226	ENSANAG00000035640	USB1	100	96.226	Aotus_nancymaae
ENSPPAG00000042137	USB1	94	50.201	ENSACLG00000020586	usb1	80	53.097	Astatotilapia_calliptera
ENSPPAG00000042137	USB1	84	51.121	ENSAMXG00000040146	usb1	74	51.121	Astyanax_mexicanus
ENSPPAG00000042137	USB1	100	84.151	ENSBTAG00000015758	USB1	100	84.151	Bos_taurus
ENSPPAG00000042137	USB1	100	96.226	ENSCJAG00000011733	USB1	100	96.226	Callithrix_jacchus
ENSPPAG00000042137	USB1	99	81.250	ENSCAFG00000008556	USB1	73	79.779	Canis_familiaris
ENSPPAG00000042137	USB1	99	80.220	ENSCAFG00020009263	USB1	99	79.121	Canis_lupus_dingo
ENSPPAG00000042137	USB1	100	83.019	ENSCHIG00000024290	USB1	100	83.019	Capra_hircus
ENSPPAG00000042137	USB1	100	90.189	ENSTSYG00000006997	USB1	100	90.189	Carlito_syrichta
ENSPPAG00000042137	USB1	87	72.897	ENSCAPG00000009057	USB1	100	72.897	Cavia_aperea
ENSPPAG00000042137	USB1	100	82.463	ENSCPOG00000014325	USB1	100	82.463	Cavia_porcellus
ENSPPAG00000042137	USB1	100	97.358	ENSCCAG00000022132	USB1	100	97.358	Cebus_capucinus
ENSPPAG00000042137	USB1	100	96.226	ENSCATG00000032174	USB1	100	96.226	Cercocebus_atys
ENSPPAG00000042137	USB1	66	86.932	ENSCLAG00000007363	USB1	100	86.932	Chinchilla_lanigera
ENSPPAG00000042137	USB1	100	96.981	ENSCSAG00000004783	USB1	100	96.981	Chlorocebus_sabaeus
ENSPPAG00000042137	USB1	92	65.306	ENSCPBG00000026943	USB1	100	61.151	Chrysemys_picta_bellii
ENSPPAG00000042137	USB1	83	30.263	ENSCSAVG00000000894	-	82	30.263	Ciona_savignyi
ENSPPAG00000042137	USB1	100	96.226	ENSCANG00000037135	USB1	100	96.226	Colobus_angolensis_palliatus
ENSPPAG00000042137	USB1	100	84.701	ENSCGRG00001011243	USB1	100	84.328	Cricetulus_griseus_chok1gshd
ENSPPAG00000042137	USB1	100	84.701	ENSCGRG00000013252	USB1	100	84.328	Cricetulus_griseus_crigri
ENSPPAG00000042137	USB1	98	47.080	ENSCSEG00000013881	usb1	84	49.356	Cynoglossus_semilaevis
ENSPPAG00000042137	USB1	85	49.561	ENSCVAG00000009252	usb1	97	50.000	Cyprinodon_variegatus
ENSPPAG00000042137	USB1	90	48.117	ENSDARG00000003841	usb1	81	50.446	Danio_rerio
ENSPPAG00000042137	USB1	100	83.774	ENSDORG00000001888	Usb1	100	83.774	Dipodomys_ordii
ENSPPAG00000042137	USB1	77	39.524	FBgn0037713	CG16790	78	39.524	Drosophila_melanogaster
ENSPPAG00000042137	USB1	95	75.658	ENSETEG00000019682	USB1	100	70.037	Echinops_telfairi
ENSPPAG00000042137	USB1	84	50.450	ENSEBUG00000005889	usb1	78	50.450	Eptatretus_burgeri
ENSPPAG00000042137	USB1	100	86.038	ENSEASG00005005484	USB1	100	86.038	Equus_asinus_asinus
ENSPPAG00000042137	USB1	100	86.415	ENSECAG00000019493	USB1	91	86.415	Equus_caballus
ENSPPAG00000042137	USB1	66	77.841	ENSEEUG00000000154	USB1	100	60.000	Erinaceus_europaeus
ENSPPAG00000042137	USB1	94	46.800	ENSELUG00000010974	usb1	88	47.347	Esox_lucius
ENSPPAG00000042137	USB1	100	85.019	ENSFCAG00000002693	USB1	100	85.019	Felis_catus
ENSPPAG00000042137	USB1	85	66.372	ENSFALG00000006876	USB1	99	61.624	Ficedula_albicollis
ENSPPAG00000042137	USB1	100	84.644	ENSFDAG00000010052	USB1	100	84.644	Fukomys_damarensis
ENSPPAG00000042137	USB1	92	44.444	ENSFHEG00000012334	usb1	78	52.551	Fundulus_heteroclitus
ENSPPAG00000042137	USB1	84	51.121	ENSGMOG00000004228	usb1	99	51.121	Gadus_morhua
ENSPPAG00000042137	USB1	84	66.964	ENSGALG00000035604	USB1	89	66.814	Gallus_gallus
ENSPPAG00000042137	USB1	98	48.014	ENSGAFG00000021890	usb1	87	50.206	Gambusia_affinis
ENSPPAG00000042137	USB1	85	51.770	ENSGACG00000003257	usb1	81	51.770	Gasterosteus_aculeatus
ENSPPAG00000042137	USB1	100	62.182	ENSGAGG00000022572	USB1	100	61.538	Gopherus_agassizii
ENSPPAG00000042137	USB1	100	98.868	ENSGGOG00000017147	USB1	100	98.868	Gorilla_gorilla
ENSPPAG00000042137	USB1	94	51.004	ENSHBUG00000009823	usb1	81	53.744	Haplochromis_burtoni
ENSPPAG00000042137	USB1	100	85.393	ENSHGLG00000016078	USB1	98	85.393	Heterocephalus_glaber_female
ENSPPAG00000042137	USB1	100	85.393	ENSHGLG00100005562	USB1	98	85.393	Heterocephalus_glaber_male
ENSPPAG00000042137	USB1	82	54.839	ENSHCOG00000015633	usb1	86	54.709	Hippocampus_comes
ENSPPAG00000042137	USB1	85	54.464	ENSIPUG00000008601	usb1	78	54.464	Ictalurus_punctatus
ENSPPAG00000042137	USB1	100	83.883	ENSSTOG00000007548	USB1	100	83.883	Ictidomys_tridecemlineatus
ENSPPAG00000042137	USB1	100	85.768	ENSJJAG00000021859	Usb1	100	85.768	Jaculus_jaculus
ENSPPAG00000042137	USB1	96	48.638	ENSKMAG00000007200	usb1	80	52.423	Kryptolebias_marmoratus
ENSPPAG00000042137	USB1	75	51.759	ENSLBEG00000008452	usb1	64	52.632	Labrus_bergylta
ENSPPAG00000042137	USB1	85	55.022	ENSLACG00000000105	USB1	72	59.330	Latimeria_chalumnae
ENSPPAG00000042137	USB1	95	52.941	ENSLOCG00000000465	usb1	85	53.942	Lepisosteus_oculatus
ENSPPAG00000042137	USB1	100	64.815	ENSLAFG00000002267	USB1	100	65.185	Loxodonta_africana
ENSPPAG00000042137	USB1	100	96.604	ENSMFAG00000003926	USB1	100	96.604	Macaca_fascicularis
ENSPPAG00000042137	USB1	100	96.604	ENSMMUG00000022669	USB1	100	96.604	Macaca_mulatta
ENSPPAG00000042137	USB1	100	96.226	ENSMNEG00000042487	USB1	100	96.226	Macaca_nemestrina
ENSPPAG00000042137	USB1	100	96.604	ENSMLEG00000028756	USB1	100	96.604	Mandrillus_leucophaeus
ENSPPAG00000042137	USB1	98	48.014	ENSMAMG00000015092	usb1	83	51.502	Mastacembelus_armatus
ENSPPAG00000042137	USB1	94	50.201	ENSMZEG00005010008	usb1	80	53.097	Maylandia_zebra
ENSPPAG00000042137	USB1	100	85.019	ENSMAUG00000007832	Usb1	100	85.019	Mesocricetus_auratus
ENSPPAG00000042137	USB1	100	90.189	ENSMICG00000004900	USB1	100	90.189	Microcebus_murinus
ENSPPAG00000042137	USB1	100	83.895	ENSMOCG00000022647	Usb1	100	83.895	Microtus_ochrogaster
ENSPPAG00000042137	USB1	86	52.193	ENSMMOG00000000490	usb1	88	52.193	Mola_mola
ENSPPAG00000042137	USB1	100	68.284	ENSMODG00000014067	USB1	100	66.791	Monodelphis_domestica
ENSPPAG00000042137	USB1	95	49.004	ENSMALG00000005930	usb1	80	52.423	Monopterus_albus
ENSPPAG00000042137	USB1	100	80.899	MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	Mus_caroli
ENSPPAG00000042137	USB1	100	81.273	ENSMUSG00000031792	Usb1	100	84.071	Mus_musculus
ENSPPAG00000042137	USB1	100	81.648	MGP_PahariEiJ_G0023019	Usb1	100	84.615	Mus_pahari
ENSPPAG00000042137	USB1	100	80.524	MGP_SPRETEiJ_G0032540	Usb1	100	80.524	Mus_spretus
ENSPPAG00000042137	USB1	100	81.413	ENSMPUG00000004684	USB1	96	81.041	Mustela_putorius_furo
ENSPPAG00000042137	USB1	87	87.446	ENSMLUG00000007400	USB1	100	87.446	Myotis_lucifugus
ENSPPAG00000042137	USB1	100	83.271	ENSNGAG00000009703	Usb1	100	83.271	Nannospalax_galili
ENSPPAG00000042137	USB1	94	47.521	ENSNBRG00000008747	usb1	99	52.970	Neolamprologus_brichardi
ENSPPAG00000042137	USB1	100	98.387	ENSNLEG00000003340	USB1	100	98.400	Nomascus_leucogenys
ENSPPAG00000042137	USB1	94	57.692	ENSMEUG00000003328	-	100	58.710	Notamacropus_eugenii
ENSPPAG00000042137	USB1	76	76.667	ENSOPRG00000011803	USB1	72	87.879	Ochotona_princeps
ENSPPAG00000042137	USB1	100	81.648	ENSODEG00000016214	USB1	100	81.648	Octodon_degus
ENSPPAG00000042137	USB1	98	48.582	ENSONIG00000011063	usb1	81	54.185	Oreochromis_niloticus
ENSPPAG00000042137	USB1	85	73.778	ENSOANG00000012118	USB1	94	73.778	Ornithorhynchus_anatinus
ENSPPAG00000042137	USB1	94	47.791	ENSORLG00000012479	usb1	83	50.439	Oryzias_latipes
ENSPPAG00000042137	USB1	94	48.193	ENSORLG00020018671	usb1	99	47.407	Oryzias_latipes_hni
ENSPPAG00000042137	USB1	86	50.877	ENSORLG00015009679	usb1	84	50.877	Oryzias_latipes_hsok
ENSPPAG00000042137	USB1	85	50.442	ENSOMEG00000012930	usb1	82	50.000	Oryzias_melastigma
ENSPPAG00000042137	USB1	100	89.069	ENSOGAG00000003273	USB1	100	89.069	Otolemur_garnettii
ENSPPAG00000042137	USB1	95	81.423	ENSOARG00000001107	USB1	93	83.539	Ovis_aries
ENSPPAG00000042137	USB1	100	85.019	ENSPPRG00000024797	USB1	100	85.019	Panthera_pardus
ENSPPAG00000042137	USB1	100	85.019	ENSPTIG00000007506	USB1	100	85.019	Panthera_tigris_altaica
ENSPPAG00000042137	USB1	100	98.785	ENSPTRG00000008172	USB1	100	99.533	Pan_troglodytes
ENSPPAG00000042137	USB1	100	96.604	ENSPANG00000025138	USB1	100	96.604	Papio_anubis
ENSPPAG00000042137	USB1	96	51.163	ENSPKIG00000015109	usb1	76	54.667	Paramormyrops_kingsleyae
ENSPPAG00000042137	USB1	85	53.097	ENSPSIG00000004305	USB1	100	53.097	Pelodiscus_sinensis
ENSPPAG00000042137	USB1	84	52.018	ENSPMGG00000017725	usb1	85	52.018	Periophthalmus_magnuspinnatus
ENSPPAG00000042137	USB1	100	82.353	ENSPEMG00000016183	Usb1	100	80.147	Peromyscus_maniculatus_bairdii
ENSPPAG00000042137	USB1	89	49.367	ENSPMAG00000000462	usb1	100	49.367	Petromyzon_marinus
ENSPPAG00000042137	USB1	98	48.188	ENSPFOG00000011130	usb1	82	51.754	Poecilia_formosa
ENSPPAG00000042137	USB1	98	48.188	ENSPLAG00000009820	usb1	82	51.754	Poecilia_latipinna
ENSPPAG00000042137	USB1	98	47.653	ENSPMEG00000006402	usb1	82	51.754	Poecilia_mexicana
ENSPPAG00000042137	USB1	92	43.836	ENSPREG00000001047	usb1	79	53.061	Poecilia_reticulata
ENSPPAG00000042137	USB1	95	94.444	ENSPPYG00000007401	USB1	100	94.444	Pongo_abelii
ENSPPAG00000042137	USB1	100	91.139	ENSPCOG00000022612	USB1	100	91.139	Propithecus_coquereli
ENSPPAG00000042137	USB1	100	80.000	ENSPVAG00000004613	USB1	100	80.000	Pteropus_vampyrus
ENSPPAG00000042137	USB1	94	51.515	ENSPNYG00000022262	usb1	81	53.744	Pundamilia_nyererei
ENSPPAG00000042137	USB1	98	47.126	ENSPNAG00000011736	usb1	76	51.339	Pygocentrus_nattereri
ENSPPAG00000042137	USB1	100	83.521	ENSRNOG00000013216	Usb1	100	83.521	Rattus_norvegicus
ENSPPAG00000042137	USB1	100	96.761	ENSRBIG00000044466	USB1	100	97.664	Rhinopithecus_bieti
ENSPPAG00000042137	USB1	100	96.981	ENSRROG00000029211	USB1	100	96.981	Rhinopithecus_roxellana
ENSPPAG00000042137	USB1	100	94.717	ENSSBOG00000029362	USB1	100	94.717	Saimiri_boliviensis_boliviensis
ENSPPAG00000042137	USB1	83	72.603	ENSSHAG00000006993	USB1	94	70.464	Sarcophilus_harrisii
ENSPPAG00000042137	USB1	89	55.462	ENSSFOG00015023663	usb1	75	55.462	Scleropages_formosus
ENSPPAG00000042137	USB1	98	48.551	ENSSMAG00000015834	usb1	83	50.202	Scophthalmus_maximus
ENSPPAG00000042137	USB1	85	54.464	ENSSDUG00000002949	usb1	83	54.464	Seriola_dumerili
ENSPPAG00000042137	USB1	85	53.982	ENSSLDG00000014174	usb1	80	53.982	Seriola_lalandi_dorsalis
ENSPPAG00000042137	USB1	81	68.224	ENSSPUG00000006741	USB1	100	68.224	Sphenodon_punctatus
ENSPPAG00000042137	USB1	86	51.542	ENSSPAG00000007484	usb1	80	51.542	Stegastes_partitus
ENSPPAG00000042137	USB1	100	83.271	ENSSSCG00000002807	USB1	100	81.784	Sus_scrofa
ENSPPAG00000042137	USB1	80	69.340	ENSTGUG00000004792	USB1	87	68.018	Taeniopygia_guttata
ENSPPAG00000042137	USB1	98	48.881	ENSTRUG00000021069	usb1	86	50.215	Takifugu_rubripes
ENSPPAG00000042137	USB1	98	45.283	ENSTNIG00000000626	usb1	83	47.768	Tetraodon_nigroviridis
ENSPPAG00000042137	USB1	88	61.207	ENSTBEG00000001507	USB1	100	61.207	Tupaia_belangeri
ENSPPAG00000042137	USB1	100	82.900	ENSUAMG00000016823	USB1	100	82.900	Ursus_americanus
ENSPPAG00000042137	USB1	81	86.449	ENSUMAG00000021369	USB1	100	86.449	Ursus_maritimus
ENSPPAG00000042137	USB1	99	48.734	ENSVPAG00000009834	-	59	86.441	Vicugna_pacos
ENSPPAG00000042137	USB1	99	82.090	ENSVVUG00000023700	USB1	93	84.647	Vulpes_vulpes
ENSPPAG00000042137	USB1	82	55.505	ENSXETG00000013795	usb1	94	53.814	Xenopus_tropicalis
ENSPPAG00000042137	USB1	94	49.600	ENSXMAG00000024687	usb1	67	52.193	Xiphophorus_maculatus