EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPPAG00000042457 (Gene tree)
Gene ID
100987738
Gene Symbol
CPSF3
Alias
-
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Pan_paniscus
Status
putative
Strand
Plus strand
Length
49323 bases
Position
chr2A:9576871-9626193
Accession
100987738
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPPAP00000039542CPSF73-100_CPF11718.81.5e-5411
ENSPPAP00000039547Beta-CaspPF10996.85.2e-3411
ENSPPAP00000039542Beta-CaspPF10996.87.4e-3411
ENSPPAP00000039547Lactamase_BPF00753.279.9e-1911
ENSPPAP00000039542Lactamase_BPF00753.271.7e-1811
ENSPPAP00000039547RMMBLPF07521.121.6e-2111
ENSPPAP00000039542RMMBLPF07521.122e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPPAT00000062458CPSF3-2021539-ENSPPAP00000039547512 (aa)-A0A2R9CN02
ENSPPAT00000062453CPSF3-2012376XM_003826943ENSPPAP00000039542684 (aa)XP_003826991A0A2R9CMZ9
Gene Model
Click here to download ENSPPAG00000042457's gene model file
Pathways
Pathway IDPathway NameSource
pps03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000042457's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPPAG00000042457CPSF38740.044ENSPPAG00000037865INTS118341.304
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPPAG00000042457CPSF310099.854ENSG00000119203CPSF3100100.000Homo_sapiens
ENSPPAG00000042457CPSF39196.774ENSAPOG00000022087cpsf39885.420Acanthochromis_polyacanthus
ENSPPAG00000042457CPSF39198.065ENSAPOG00000012241CPSF39096.982Acanthochromis_polyacanthus
ENSPPAG00000042457CPSF310099.561ENSAMEG00000008493CPSF310099.561Ailuropoda_melanoleuca
ENSPPAG00000042457CPSF39282.803ENSACIG00000009846cpsf39982.803Amphilophus_citrinellus
ENSPPAG00000042457CPSF39286.508ENSACIG00000023663CPSF39986.508Amphilophus_citrinellus
ENSPPAG00000042457CPSF39198.065ENSAOCG00000010077CPSF39887.941Amphiprion_ocellaris
ENSPPAG00000042457CPSF39196.774ENSAOCG00000022056cpsf39491.156Amphiprion_ocellaris
ENSPPAG00000042457CPSF39196.774ENSAPEG00000019526cpsf39786.728Amphiprion_percula
ENSPPAG00000042457CPSF39198.065ENSAPEG00000021167CPSF39887.941Amphiprion_percula
ENSPPAG00000042457CPSF39198.065ENSATEG00000014525CPSF39883.235Anabas_testudineus
ENSPPAG00000042457CPSF39196.774ENSATEG00000003959cpsf39885.420Anabas_testudineus
ENSPPAG00000042457CPSF39895.387ENSAPLG00000006941CPSF39895.387Anas_platyrhynchos
ENSPPAG00000042457CPSF39393.071ENSACAG00000001759CPSF39993.071Anolis_carolinensis
ENSPPAG00000042457CPSF310093.275ENSANAG00000031254CPSF310093.275Aotus_nancymaae
ENSPPAG00000042457CPSF39286.349ENSACLG00000018846CPSF39986.349Astatotilapia_calliptera
ENSPPAG00000042457CPSF38896.896ENSACLG00000014484cpsf39985.714Astatotilapia_calliptera
ENSPPAG00000042457CPSF39198.065ENSAMXG00000004786cpsf39888.235Astyanax_mexicanus
ENSPPAG00000042457CPSF310099.708ENSBTAG00000019735CPSF310099.708Bos_taurus
ENSPPAG00000042457CPSF39467.012WBGene00013460cpsf-38959.213Caenorhabditis_elegans
ENSPPAG00000042457CPSF310099.561ENSCJAG00000006276CPSF310099.561Callithrix_jacchus
ENSPPAG00000042457CPSF310099.561ENSCAFG00000003375CPSF39599.561Canis_familiaris
ENSPPAG00000042457CPSF39994.059ENSCAFG00020026799CPSF3100100.000Canis_lupus_dingo
ENSPPAG00000042457CPSF310099.708ENSCHIG00000013973CPSF310099.708Capra_hircus
ENSPPAG00000042457CPSF310099.854ENSTSYG00000002967CPSF310099.854Carlito_syrichta
ENSPPAG00000042457CPSF39897.901ENSCAPG00000013851CPSF310097.901Cavia_aperea
ENSPPAG00000042457CPSF310097.953ENSCPOG00000011299CPSF310097.953Cavia_porcellus
ENSPPAG00000042457CPSF310099.708ENSCCAG00000036730CPSF310099.708Cebus_capucinus
ENSPPAG00000042457CPSF310097.226ENSCATG00000014770CPSF399100.000Cercocebus_atys
ENSPPAG00000042457CPSF310097.515ENSCLAG00000002727CPSF310097.515Chinchilla_lanigera
ENSPPAG00000042457CPSF310092.105ENSCSAG00000007125CPSF310092.105Chlorocebus_sabaeus
ENSPPAG00000042457CPSF386100.000ENSCHOG00000000180CPSF38572.281Choloepus_hoffmanni
ENSPPAG00000042457CPSF39995.601ENSCPBG00000014074CPSF39995.601Chrysemys_picta_bellii
ENSPPAG00000042457CPSF39477.547ENSCING00000007214-9868.129Ciona_intestinalis
ENSPPAG00000042457CPSF310086.696ENSCANG00000034435CPSF310086.696Colobus_angolensis_palliatus
ENSPPAG00000042457CPSF310098.977ENSCGRG00001013134Cpsf310098.977Cricetulus_griseus_chok1gshd
ENSPPAG00000042457CPSF310098.977ENSCGRG00000018319Cpsf310098.977Cricetulus_griseus_crigri
ENSPPAG00000042457CPSF39197.204ENSCSEG00000002021CPSF39986.553Cynoglossus_semilaevis
ENSPPAG00000042457CPSF39197.849ENSCVAG00000015067CPSF39888.235Cyprinodon_variegatus
ENSPPAG00000042457CPSF39198.280ENSDARG00000027649cpsf39888.971Danio_rerio
ENSPPAG00000042457CPSF310097.810ENSDNOG00000008940CPSF39597.810Dasypus_novemcinctus
ENSPPAG00000042457CPSF39599.232ENSDORG00000014263Cpsf310099.232Dipodomys_ordii
ENSPPAG00000042457CPSF39876.000FBgn0261065Cpsf739867.305Drosophila_melanogaster
ENSPPAG00000042457CPSF39585.714ENSETEG00000003893CPSF310085.714Echinops_telfairi
ENSPPAG00000042457CPSF39192.241ENSEBUG00000009018cpsf39878.797Eptatretus_burgeri
ENSPPAG00000042457CPSF310099.561ENSEASG00005003970CPSF310099.561Equus_asinus_asinus
ENSPPAG00000042457CPSF310099.561ENSECAG00000019911CPSF310099.561Equus_caballus
ENSPPAG00000042457CPSF310084.064ENSEEUG00000015422CPSF310084.064Erinaceus_europaeus
ENSPPAG00000042457CPSF39197.210ENSELUG00000013775cpsf39888.088Esox_lucius
ENSPPAG00000042457CPSF310099.708ENSFCAG00000007852CPSF310099.708Felis_catus
ENSPPAG00000042457CPSF39595.363ENSFALG00000006572CPSF310095.363Ficedula_albicollis
ENSPPAG00000042457CPSF39997.361ENSFDAG00000006317CPSF39997.361Fukomys_damarensis
ENSPPAG00000042457CPSF35968.780ENSFHEG00000012186CPSF39968.780Fundulus_heteroclitus
ENSPPAG00000042457CPSF39196.129ENSFHEG00000014774cpsf39885.125Fundulus_heteroclitus
ENSPPAG00000042457CPSF39196.344ENSGMOG00000003157cpsf39886.618Gadus_morhua
ENSPPAG00000042457CPSF39995.154ENSGALG00000016424CPSF39995.154Gallus_gallus
ENSPPAG00000042457CPSF39197.854ENSGAFG00000008016CPSF39888.071Gambusia_affinis
ENSPPAG00000042457CPSF39282.830ENSGAFG00000019449cpsf39982.830Gambusia_affinis
ENSPPAG00000042457CPSF36893.576ENSGAGG00000025583CPSF39393.576Gopherus_agassizii
ENSPPAG00000042457CPSF310099.609ENSGGOG00000001757CPSF3100100.000Gorilla_gorilla
ENSPPAG00000042457CPSF35981.481ENSHBUG00000014332CPSF39981.481Haplochromis_burtoni
ENSPPAG00000042457CPSF39196.360ENSHBUG00000001188cpsf39985.609Haplochromis_burtoni
ENSPPAG00000042457CPSF310096.930ENSHGLG00000000666CPSF39996.930Heterocephalus_glaber_female
ENSPPAG00000042457CPSF310096.930ENSHGLG00100007765CPSF39996.930Heterocephalus_glaber_male
ENSPPAG00000042457CPSF39196.360ENSHCOG00000007251cpsf39984.897Hippocampus_comes
ENSPPAG00000042457CPSF39197.634ENSHCOG00000015957CPSF39786.324Hippocampus_comes
ENSPPAG00000042457CPSF39196.559ENSIPUG00000023488cpsf39887.059Ictalurus_punctatus
ENSPPAG00000042457CPSF310098.977ENSSTOG00000004476CPSF310098.977Ictidomys_tridecemlineatus
ENSPPAG00000042457CPSF310097.807ENSJJAG00000023415Cpsf310097.807Jaculus_jaculus
ENSPPAG00000042457CPSF39197.849ENSKMAG00000007317CPSF39887.647Kryptolebias_marmoratus
ENSPPAG00000042457CPSF39196.352ENSKMAG00000002806cpsf39884.831Kryptolebias_marmoratus
ENSPPAG00000042457CPSF39191.631ENSLBEG00000020569cpsf39479.118Labrus_bergylta
ENSPPAG00000042457CPSF39198.065ENSLBEG00000013492CPSF39889.043Labrus_bergylta
ENSPPAG00000042457CPSF35579.625ENSLBEG00000015018-9979.625Labrus_bergylta
ENSPPAG00000042457CPSF39983.800ENSLACG00000008308CPSF39883.800Latimeria_chalumnae
ENSPPAG00000042457CPSF39198.065ENSLOCG00000016823cpsf39889.280Lepisosteus_oculatus
ENSPPAG00000042457CPSF39997.794ENSLAFG00000009467CPSF310097.794Loxodonta_africana
ENSPPAG00000042457CPSF310099.854ENSMFAG00000001339CPSF310099.854Macaca_fascicularis
ENSPPAG00000042457CPSF39997.638ENSMMUG00000018038CPSF310099.845Macaca_mulatta
ENSPPAG00000042457CPSF310087.135ENSMNEG00000039447CPSF310087.135Macaca_nemestrina
ENSPPAG00000042457CPSF3100100.000ENSMLEG00000026825CPSF3100100.000Mandrillus_leucophaeus
ENSPPAG00000042457CPSF39285.285ENSMAMG00000008835CPSF39985.285Mastacembelus_armatus
ENSPPAG00000042457CPSF39197.204ENSMAMG00000003076cpsf39885.714Mastacembelus_armatus
ENSPPAG00000042457CPSF39196.360ENSMZEG00005014358cpsf39985.609Maylandia_zebra
ENSPPAG00000042457CPSF39198.280ENSMZEG00005006258CPSF39888.529Maylandia_zebra
ENSPPAG00000042457CPSF39895.202ENSMGAG00000013995CPSF310095.202Meleagris_gallopavo
ENSPPAG00000042457CPSF35597.340ENSMAUG00000000166Cpsf310097.340Mesocricetus_auratus
ENSPPAG00000042457CPSF310094.006ENSMICG00000002363CPSF310094.006Microcebus_murinus
ENSPPAG00000042457CPSF310094.298ENSMOCG00000020067Cpsf310094.298Microtus_ochrogaster
ENSPPAG00000042457CPSF38496.752ENSMMOG00000018212CPSF39882.326Mola_mola
ENSPPAG00000042457CPSF38071.779ENSMMOG00000011923CPSF38477.857Mola_mola
ENSPPAG00000042457CPSF310096.093ENSMODG00000014703CPSF310096.093Monodelphis_domestica
ENSPPAG00000042457CPSF38295.283ENSMALG00000011474CPSF39983.438Monopterus_albus
ENSPPAG00000042457CPSF39196.574ENSMALG00000016416cpsf39986.050Monopterus_albus
ENSPPAG00000042457CPSF310098.684MGP_CAROLIEiJ_G0017640Cpsf310098.684Mus_caroli
ENSPPAG00000042457CPSF310098.684ENSMUSG00000054309Cpsf310098.684Mus_musculus
ENSPPAG00000042457CPSF310098.538MGP_PahariEiJ_G0029397Cpsf310098.538Mus_pahari
ENSPPAG00000042457CPSF310098.684MGP_SPRETEiJ_G0018481Cpsf310098.684Mus_spretus
ENSPPAG00000042457CPSF310098.830ENSMPUG00000013213CPSF310098.830Mustela_putorius_furo
ENSPPAG00000042457CPSF310098.540ENSMLUG00000010636CPSF310098.540Myotis_lucifugus
ENSPPAG00000042457CPSF310098.830ENSNGAG00000019836Cpsf310098.830Nannospalax_galili
ENSPPAG00000042457CPSF39196.360ENSNBRG00000004770cpsf39985.169Neolamprologus_brichardi
ENSPPAG00000042457CPSF39286.349ENSNBRG00000010525CPSF39986.349Neolamprologus_brichardi
ENSPPAG00000042457CPSF310099.854ENSNLEG00000013359CPSF310099.854Nomascus_leucogenys
ENSPPAG00000042457CPSF310065.497ENSMEUG00000013117-10065.497Notamacropus_eugenii
ENSPPAG00000042457CPSF310089.766ENSOPRG00000008902CPSF310089.766Ochotona_princeps
ENSPPAG00000042457CPSF310097.076ENSODEG00000003129CPSF310097.076Octodon_degus
ENSPPAG00000042457CPSF39196.360ENSONIG00000018812cpsf39985.756Oreochromis_niloticus
ENSPPAG00000042457CPSF38296.454ENSOANG00000008577CPSF310096.454Ornithorhynchus_anatinus
ENSPPAG00000042457CPSF310099.123ENSOCUG00000003728CPSF310099.123Oryctolagus_cuniculus
ENSPPAG00000042457CPSF39195.931ENSORLG00000018854cpsf39983.554Oryzias_latipes
ENSPPAG00000042457CPSF39195.931ENSORLG00020013331cpsf39983.554Oryzias_latipes_hni
ENSPPAG00000042457CPSF39195.931ENSORLG00015011017cpsf39983.554Oryzias_latipes_hsok
ENSPPAG00000042457CPSF39195.931ENSOMEG00000010647cpsf39483.700Oryzias_melastigma
ENSPPAG00000042457CPSF310089.766ENSOGAG00000001680CPSF310089.766Otolemur_garnettii
ENSPPAG00000042457CPSF310099.708ENSOARG00000015073CPSF310099.708Ovis_aries
ENSPPAG00000042457CPSF310099.415ENSPPRG00000016790CPSF310099.415Panthera_pardus
ENSPPAG00000042457CPSF39999.412ENSPTIG00000003920CPSF310099.370Panthera_tigris_altaica
ENSPPAG00000042457CPSF3100100.000ENSPTRG00000011638CPSF3100100.000Pan_troglodytes
ENSPPAG00000042457CPSF310099.708ENSPANG00000016798CPSF310099.708Papio_anubis
ENSPPAG00000042457CPSF39198.283ENSPKIG00000023646cpsf39989.302Paramormyrops_kingsleyae
ENSPPAG00000042457CPSF39993.851ENSPSIG00000016144CPSF310093.851Pelodiscus_sinensis
ENSPPAG00000042457CPSF38094.203ENSPMGG00000006141-9985.340Periophthalmus_magnuspinnatus
ENSPPAG00000042457CPSF35979.259ENSPMGG00000015311CPSF39979.259Periophthalmus_magnuspinnatus
ENSPPAG00000042457CPSF310098.392ENSPEMG00000017668Cpsf310098.392Peromyscus_maniculatus_bairdii
ENSPPAG00000042457CPSF39192.979ENSPMAG00000004841cpsf39990.317Petromyzon_marinus
ENSPPAG00000042457CPSF39897.601ENSPCIG00000009823CPSF39897.699Phascolarctos_cinereus
ENSPPAG00000042457CPSF39197.854ENSPFOG00000010418-9887.776Poecilia_formosa
ENSPPAG00000042457CPSF39196.146ENSPFOG00000015922cpsf39984.751Poecilia_formosa
ENSPPAG00000042457CPSF35980.693ENSPLAG00000021300-9980.693Poecilia_latipinna
ENSPPAG00000042457CPSF39196.146ENSPLAG00000000882cpsf39984.751Poecilia_latipinna
ENSPPAG00000042457CPSF39196.146ENSPMEG00000018309cpsf39984.897Poecilia_mexicana
ENSPPAG00000042457CPSF39198.065ENSPREG00000004482CPSF39882.474Poecilia_reticulata
ENSPPAG00000042457CPSF39282.671ENSPREG00000014875cpsf39982.671Poecilia_reticulata
ENSPPAG00000042457CPSF310095.468ENSPPYG00000012666CPSF310095.468Pongo_abelii
ENSPPAG00000042457CPSF39172.043ENSPCAG00000015042CPSF310063.902Procavia_capensis
ENSPPAG00000042457CPSF38892.199ENSPCOG00000023016CPSF39892.199Propithecus_coquereli
ENSPPAG00000042457CPSF39999.560ENSPVAG00000005324CPSF39999.560Pteropus_vampyrus
ENSPPAG00000042457CPSF38196.145ENSPNYG00000021047CPSF39191.529Pundamilia_nyererei
ENSPPAG00000042457CPSF39196.360ENSPNYG00000004405cpsf39985.609Pundamilia_nyererei
ENSPPAG00000042457CPSF39198.065ENSPNAG00000023060cpsf39887.647Pygocentrus_nattereri
ENSPPAG00000042457CPSF39998.680ENSRNOG00000052418Cpsf39998.680Rattus_norvegicus
ENSPPAG00000042457CPSF310094.006ENSRBIG00000041615CPSF39995.363Rhinopithecus_bieti
ENSPPAG00000042457CPSF3100100.000ENSRROG00000033792CPSF3100100.000Rhinopithecus_roxellana
ENSPPAG00000042457CPSF38853.079YLR277CYSH19540.805Saccharomyces_cerevisiae
ENSPPAG00000042457CPSF310093.623ENSSBOG00000027263CPSF310093.623Saimiri_boliviensis_boliviensis
ENSPPAG00000042457CPSF310097.807ENSSHAG00000007024CPSF310097.807Sarcophilus_harrisii
ENSPPAG00000042457CPSF39198.073ENSSFOG00015002108cpsf39989.574Scleropages_formosus
ENSPPAG00000042457CPSF39197.639ENSSMAG00000020534CPSF39587.654Scophthalmus_maximus
ENSPPAG00000042457CPSF39198.065ENSSDUG00000018498CPSF39888.088Seriola_dumerili
ENSPPAG00000042457CPSF39196.360ENSSDUG00000002828cpsf39685.609Seriola_dumerili
ENSPPAG00000042457CPSF39198.065ENSSLDG00000005234CPSF39888.088Seriola_lalandi_dorsalis
ENSPPAG00000042457CPSF39196.360ENSSLDG00000008469cpsf39190.847Seriola_lalandi_dorsalis
ENSPPAG00000042457CPSF310081.433ENSSARG00000005186CPSF310081.433Sorex_araneus
ENSPPAG00000042457CPSF39892.399ENSSPUG00000015525CPSF39792.399Sphenodon_punctatus
ENSPPAG00000042457CPSF39198.065ENSSPAG00000002906CPSF39887.794Stegastes_partitus
ENSPPAG00000042457CPSF39196.989ENSSPAG00000018579cpsf39885.567Stegastes_partitus
ENSPPAG00000042457CPSF39999.414ENSSSCG00000020799CPSF39999.414Sus_scrofa
ENSPPAG00000042457CPSF39995.448ENSTGUG00000013016CPSF39995.448Taeniopygia_guttata
ENSPPAG00000042457CPSF35973.219ENSTRUG00000013905CPSF39973.219Takifugu_rubripes
ENSPPAG00000042457CPSF39196.996ENSTRUG00000007030cpsf39784.853Takifugu_rubripes
ENSPPAG00000042457CPSF38593.699ENSTBEG00000002707CPSF38593.699Tupaia_belangeri
ENSPPAG00000042457CPSF38898.925ENSTTRG00000000861CPSF38898.925Tursiops_truncatus
ENSPPAG00000042457CPSF39996.481ENSUAMG00000007535CPSF39896.481Ursus_americanus
ENSPPAG00000042457CPSF39599.536ENSUMAG00000003676CPSF310099.536Ursus_maritimus
ENSPPAG00000042457CPSF39693.469ENSVPAG00000008041CPSF310095.899Vicugna_pacos
ENSPPAG00000042457CPSF310099.561ENSVVUG00000002194CPSF310099.561Vulpes_vulpes
ENSPPAG00000042457CPSF39198.715ENSXETG00000008263cpsf39890.162Xenopus_tropicalis
ENSPPAG00000042457CPSF39196.360ENSXCOG00000019695cpsf39985.044Xiphophorus_couchianus
ENSPPAG00000042457CPSF35479.245ENSXCOG00000000957-8779.245Xiphophorus_couchianus
ENSPPAG00000042457CPSF39198.065ENSXMAG00000027291CPSF39887.923Xiphophorus_maculatus
ENSPPAG00000042457CPSF39196.360ENSXMAG00000009784cpsf39984.751Xiphophorus_maculatus

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