EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPAG00000042947 (Gene tree)
Gene ID: 100984479
Gene Symbol: SND1
Alias: -
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Plus strand
Length: 435989 bases
Position: chr7:132302235-132738223
Accession: 100984479
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000040830	TUDOR	PF00567.24	5.7e-27	1	1
ENSPPAP00000040826	TUDOR	PF00567.24	5.9e-27	1	1
ENSPPAP00000040819	TUDOR	PF00567.24	5.9e-27	1	1
ENSPPAP00000040830	SNase	PF00565.17	1.7e-69	1	5
ENSPPAP00000040830	SNase	PF00565.17	1.7e-69	2	5
ENSPPAP00000040830	SNase	PF00565.17	1.7e-69	3	5
ENSPPAP00000040830	SNase	PF00565.17	1.7e-69	4	5
ENSPPAP00000040830	SNase	PF00565.17	1.7e-69	5	5
ENSPPAP00000040819	SNase	PF00565.17	1.9e-69	1	5
ENSPPAP00000040819	SNase	PF00565.17	1.9e-69	2	5
ENSPPAP00000040819	SNase	PF00565.17	1.9e-69	3	5
ENSPPAP00000040819	SNase	PF00565.17	1.9e-69	4	5
ENSPPAP00000040819	SNase	PF00565.17	1.9e-69	5	5
ENSPPAP00000040826	SNase	PF00565.17	1.9e-69	1	5
ENSPPAP00000040826	SNase	PF00565.17	1.9e-69	2	5
ENSPPAP00000040826	SNase	PF00565.17	1.9e-69	3	5
ENSPPAP00000040826	SNase	PF00565.17	1.9e-69	4	5
ENSPPAP00000040826	SNase	PF00565.17	1.9e-69	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000063750	SND1-203	2685	-	ENSPPAP00000040830	894 (aa)	-	A0A2R9CFW2
ENSPPAT00000063746	SND1-202	2730	-	ENSPPAP00000040826	909 (aa)	-	A0A2R9CFT3
ENSPPAT00000063739	SND1-201	3563	XM_003806046	ENSPPAP00000040819	910 (aa)	XP_003806094	A0A2R9CFY9

Gene Model

Click here to download ENSPPAG00000042947's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps05203	Viral carcinogenesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000042947's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000042947	SND1	100	99.890	ENSG00000197157	SND1	100	99.890	Homo_sapiens
ENSPPAG00000042947	SND1	99	84.876	ENSAPOG00000017599	snd1	99	84.650	Acanthochromis_polyacanthus
ENSPPAG00000042947	SND1	100	98.684	ENSAMEG00000004664	SND1	94	98.684	Ailuropoda_melanoleuca
ENSPPAG00000042947	SND1	99	82.034	ENSACIG00000003551	snd1	99	81.960	Amphilophus_citrinellus
ENSPPAG00000042947	SND1	99	84.650	ENSAOCG00000014166	snd1	99	84.427	Amphiprion_ocellaris
ENSPPAG00000042947	SND1	99	84.650	ENSAPEG00000007067	snd1	99	84.427	Amphiprion_percula
ENSPPAG00000042947	SND1	97	84.120	ENSATEG00000018475	snd1	88	84.151	Anabas_testudineus
ENSPPAG00000042947	SND1	100	99.231	ENSANAG00000034463	SND1	100	99.231	Aotus_nancymaae
ENSPPAG00000042947	SND1	99	83.705	ENSACLG00000022897	snd1	99	84.076	Astatotilapia_calliptera
ENSPPAG00000042947	SND1	99	84.298	ENSAMXG00000016318	snd1	98	84.855	Astyanax_mexicanus
ENSPPAG00000042947	SND1	100	98.791	ENSBTAG00000010692	SND1	100	98.791	Bos_taurus
ENSPPAG00000042947	SND1	98	46.820	WBGene00006626	tsn-1	99	46.514	Caenorhabditis_elegans
ENSPPAG00000042947	SND1	100	99.011	ENSCJAG00000017668	SND1	100	99.011	Callithrix_jacchus
ENSPPAG00000042947	SND1	100	99.121	ENSCAFG00000001700	SND1	100	99.121	Canis_familiaris
ENSPPAG00000042947	SND1	100	99.121	ENSCAFG00020021639	SND1	100	99.121	Canis_lupus_dingo
ENSPPAG00000042947	SND1	100	99.121	ENSCHIG00000023390	SND1	100	99.121	Capra_hircus
ENSPPAG00000042947	SND1	75	99.124	ENSTSYG00000004979	SND1	96	99.472	Carlito_syrichta
ENSPPAG00000042947	SND1	99	85.327	ENSCAPG00000010677	SND1	98	84.598	Cavia_aperea
ENSPPAG00000042947	SND1	100	98.022	ENSCPOG00000006251	SND1	100	98.022	Cavia_porcellus
ENSPPAG00000042947	SND1	100	99.341	ENSCCAG00000036847	SND1	100	99.341	Cebus_capucinus
ENSPPAG00000042947	SND1	100	99.670	ENSCATG00000035214	SND1	100	99.670	Cercocebus_atys
ENSPPAG00000042947	SND1	100	98.132	ENSCLAG00000011796	SND1	100	98.132	Chinchilla_lanigera
ENSPPAG00000042947	SND1	100	99.670	ENSCSAG00000010182	SND1	100	99.670	Chlorocebus_sabaeus
ENSPPAG00000042947	SND1	79	88.235	ENSCHOG00000002218	SND1	86	88.235	Choloepus_hoffmanni
ENSPPAG00000042947	SND1	99	93.213	ENSCPBG00000018094	SND1	98	93.161	Chrysemys_picta_bellii
ENSPPAG00000042947	SND1	99	56.745	ENSCING00000000524	-	98	57.032	Ciona_intestinalis
ENSPPAG00000042947	SND1	99	58.196	ENSCSAVG00000008807	-	99	58.343	Ciona_savignyi
ENSPPAG00000042947	SND1	100	99.670	ENSCANG00000035119	SND1	100	99.670	Colobus_angolensis_palliatus
ENSPPAG00000042947	SND1	100	97.143	ENSCGRG00001022514	Snd1	100	97.143	Cricetulus_griseus_chok1gshd
ENSPPAG00000042947	SND1	99	97.172	ENSCGRG00000012277	Snd1	99	97.172	Cricetulus_griseus_crigri
ENSPPAG00000042947	SND1	99	84.424	ENSCSEG00000008661	snd1	98	84.452	Cynoglossus_semilaevis
ENSPPAG00000042947	SND1	99	85.214	ENSCVAG00000010316	snd1	100	83.678	Cyprinodon_variegatus
ENSPPAG00000042947	SND1	100	84.447	ENSDARG00000006766	snd1	97	87.590	Danio_rerio
ENSPPAG00000042947	SND1	99	96.050	ENSDNOG00000006795	SND1	100	96.054	Dasypus_novemcinctus
ENSPPAG00000042947	SND1	100	98.681	ENSDORG00000000336	Snd1	100	98.681	Dipodomys_ordii
ENSPPAG00000042947	SND1	98	50.604	FBgn0035121	Tudor-SN	98	50.595	Drosophila_melanogaster
ENSPPAG00000042947	SND1	91	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSPPAG00000042947	SND1	60	67.568	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSPPAG00000042947	SND1	100	97.516	ENSEASG00005008513	SND1	100	97.516	Equus_asinus_asinus
ENSPPAG00000042947	SND1	100	99.121	ENSECAG00000011451	SND1	100	99.121	Equus_caballus
ENSPPAG00000042947	SND1	100	86.703	ENSEEUG00000014737	SND1	100	86.703	Erinaceus_europaeus
ENSPPAG00000042947	SND1	99	83.296	ENSELUG00000001805	snd1	95	83.166	Esox_lucius
ENSPPAG00000042947	SND1	100	99.121	ENSFCAG00000008289	SND1	100	99.121	Felis_catus
ENSPPAG00000042947	SND1	100	98.352	ENSFDAG00000015881	SND1	100	98.352	Fukomys_damarensis
ENSPPAG00000042947	SND1	99	83.113	ENSFHEG00000004093	snd1	97	84.866	Fundulus_heteroclitus
ENSPPAG00000042947	SND1	64	74.859	ENSGMOG00000018932	snd1	64	74.859	Gadus_morhua
ENSPPAG00000042947	SND1	99	85.214	ENSGAFG00000008421	snd1	99	85.214	Gambusia_affinis
ENSPPAG00000042947	SND1	100	53.746	ENSGACG00000019793	snd1	99	53.524	Gasterosteus_aculeatus
ENSPPAG00000042947	SND1	100	99.890	ENSGGOG00000009614	SND1	100	99.890	Gorilla_gorilla
ENSPPAG00000042947	SND1	99	83.705	ENSHBUG00000019135	snd1	99	84.076	Haplochromis_burtoni
ENSPPAG00000042947	SND1	100	98.022	ENSHGLG00000003618	SND1	100	98.022	Heterocephalus_glaber_female
ENSPPAG00000042947	SND1	99	97.569	ENSHGLG00100012449	SND1	100	97.569	Heterocephalus_glaber_male
ENSPPAG00000042947	SND1	99	83.860	ENSHCOG00000005266	snd1	98	83.893	Hippocampus_comes
ENSPPAG00000042947	SND1	100	82.495	ENSIPUG00000013279	snd1	99	82.743	Ictalurus_punctatus
ENSPPAG00000042947	SND1	100	98.681	ENSSTOG00000002140	SND1	100	98.681	Ictidomys_tridecemlineatus
ENSPPAG00000042947	SND1	100	98.791	ENSJJAG00000009561	Snd1	100	98.791	Jaculus_jaculus
ENSPPAG00000042947	SND1	100	83.991	ENSKMAG00000016997	snd1	98	85.011	Kryptolebias_marmoratus
ENSPPAG00000042947	SND1	99	86.491	ENSLBEG00000013563	snd1	99	83.648	Labrus_bergylta
ENSPPAG00000042947	SND1	99	85.570	ENSLOCG00000015537	snd1	98	85.336	Lepisosteus_oculatus
ENSPPAG00000042947	SND1	100	98.352	ENSLAFG00000009696	SND1	100	98.352	Loxodonta_africana
ENSPPAG00000042947	SND1	100	99.670	ENSMFAG00000038114	SND1	100	99.670	Macaca_fascicularis
ENSPPAG00000042947	SND1	100	99.670	ENSMMUG00000015432	SND1	100	99.670	Macaca_mulatta
ENSPPAG00000042947	SND1	100	99.670	ENSMNEG00000039808	SND1	100	99.670	Macaca_nemestrina
ENSPPAG00000042947	SND1	100	99.560	ENSMLEG00000029040	SND1	100	99.560	Mandrillus_leucophaeus
ENSPPAG00000042947	SND1	99	83.929	ENSMAMG00000011739	snd1	98	84.487	Mastacembelus_armatus
ENSPPAG00000042947	SND1	99	83.705	ENSMZEG00005005681	snd1	99	84.076	Maylandia_zebra
ENSPPAG00000042947	SND1	100	99.231	ENSMICG00000000097	SND1	100	99.231	Microcebus_murinus
ENSPPAG00000042947	SND1	100	98.022	ENSMOCG00000005040	Snd1	100	98.022	Microtus_ochrogaster
ENSPPAG00000042947	SND1	99	84.424	ENSMMOG00000001795	snd1	99	84.205	Mola_mola
ENSPPAG00000042947	SND1	99	95.764	ENSMODG00000015182	SND1	99	95.764	Monodelphis_domestica
ENSPPAG00000042947	SND1	100	83.224	ENSMALG00000012071	snd1	98	84.040	Monopterus_albus
ENSPPAG00000042947	SND1	100	97.692	MGP_CAROLIEiJ_G0028159	Snd1	100	97.692	Mus_caroli
ENSPPAG00000042947	SND1	100	97.473	ENSMUSG00000001424	Snd1	100	97.473	Mus_musculus
ENSPPAG00000042947	SND1	100	97.692	MGP_PahariEiJ_G0021917	Snd1	100	98.482	Mus_pahari
ENSPPAG00000042947	SND1	100	97.692	MGP_SPRETEiJ_G0029159	Snd1	100	97.692	Mus_spretus
ENSPPAG00000042947	SND1	100	98.462	ENSMPUG00000006545	SND1	100	98.462	Mustela_putorius_furo
ENSPPAG00000042947	SND1	99	97.207	ENSMLUG00000017130	SND1	99	97.207	Myotis_lucifugus
ENSPPAG00000042947	SND1	100	98.022	ENSNGAG00000011186	Snd1	100	98.022	Nannospalax_galili
ENSPPAG00000042947	SND1	99	83.594	ENSNBRG00000006681	snd1	99	83.964	Neolamprologus_brichardi
ENSPPAG00000042947	SND1	100	99.780	ENSNLEG00000012263	SND1	100	99.887	Nomascus_leucogenys
ENSPPAG00000042947	SND1	93	100.000	ENSOPRG00000013405	SND1	92	100.000	Ochotona_princeps
ENSPPAG00000042947	SND1	100	98.352	ENSODEG00000011502	SND1	100	98.352	Octodon_degus
ENSPPAG00000042947	SND1	99	83.594	ENSONIG00000011481	snd1	98	82.366	Oreochromis_niloticus
ENSPPAG00000042947	SND1	99	94.570	ENSOANG00000000817	SND1	99	93.645	Ornithorhynchus_anatinus
ENSPPAG00000042947	SND1	100	97.473	ENSOCUG00000001620	SND1	100	97.473	Oryctolagus_cuniculus
ENSPPAG00000042947	SND1	99	83.464	ENSORLG00000015201	snd1	98	83.911	Oryzias_latipes
ENSPPAG00000042947	SND1	99	83.575	ENSORLG00020013991	snd1	98	84.022	Oryzias_latipes_hni
ENSPPAG00000042947	SND1	99	83.575	ENSORLG00015012436	snd1	98	84.022	Oryzias_latipes_hsok
ENSPPAG00000042947	SND1	99	84.312	ENSOMEG00000006406	snd1	98	84.340	Oryzias_melastigma
ENSPPAG00000042947	SND1	100	99.123	ENSOGAG00000013356	SND1	94	99.123	Otolemur_garnettii
ENSPPAG00000042947	SND1	99	96.154	ENSOARG00000002149	SND1	100	96.158	Ovis_aries
ENSPPAG00000042947	SND1	100	99.121	ENSPPRG00000004494	SND1	100	99.121	Panthera_pardus
ENSPPAG00000042947	SND1	100	99.011	ENSPTIG00000014214	SND1	100	99.011	Panthera_tigris_altaica
ENSPPAG00000042947	SND1	100	100.000	ENSPTRG00000023911	SND1	100	100.000	Pan_troglodytes
ENSPPAG00000042947	SND1	99	99.548	ENSPANG00000011997	SND1	99	99.661	Papio_anubis
ENSPPAG00000042947	SND1	99	81.859	ENSPKIG00000023494	snd1	98	81.909	Paramormyrops_kingsleyae
ENSPPAG00000042947	SND1	93	82.994	ENSPMGG00000003629	snd1	100	82.994	Periophthalmus_magnuspinnatus
ENSPPAG00000042947	SND1	100	97.912	ENSPEMG00000010240	Snd1	100	97.912	Peromyscus_maniculatus_bairdii
ENSPPAG00000042947	SND1	99	73.446	ENSPMAG00000007915	-	99	73.446	Petromyzon_marinus
ENSPPAG00000042947	SND1	100	96.264	ENSPCIG00000011561	SND1	100	96.264	Phascolarctos_cinereus
ENSPPAG00000042947	SND1	100	83.882	ENSPFOG00000001557	snd1	99	84.761	Poecilia_formosa
ENSPPAG00000042947	SND1	100	83.882	ENSPLAG00000018459	snd1	96	84.761	Poecilia_latipinna
ENSPPAG00000042947	SND1	99	85.327	ENSPMEG00000006803	snd1	99	85.206	Poecilia_mexicana
ENSPPAG00000042947	SND1	100	83.991	ENSPREG00000002189	snd1	99	84.872	Poecilia_reticulata
ENSPPAG00000042947	SND1	93	99.628	ENSPPYG00000017972	SND1	100	99.628	Pongo_abelii
ENSPPAG00000042947	SND1	100	86.703	ENSPCAG00000011305	SND1	99	86.622	Procavia_capensis
ENSPPAG00000042947	SND1	100	99.451	ENSPCOG00000026791	SND1	100	99.451	Propithecus_coquereli
ENSPPAG00000042947	SND1	100	97.033	ENSPVAG00000013945	SND1	100	97.033	Pteropus_vampyrus
ENSPPAG00000042947	SND1	99	83.705	ENSPNYG00000000932	snd1	99	84.076	Pundamilia_nyererei
ENSPPAG00000042947	SND1	100	83.370	ENSPNAG00000001206	snd1	99	83.518	Pygocentrus_nattereri
ENSPPAG00000042947	SND1	99	97.357	ENSRNOG00000031173	Snd1	99	97.357	Rattus_norvegicus
ENSPPAG00000042947	SND1	74	99.812	ENSRBIG00000027782	-	93	99.810	Rhinopithecus_bieti
ENSPPAG00000042947	SND1	100	99.670	ENSRROG00000033020	SND1	100	99.670	Rhinopithecus_roxellana
ENSPPAG00000042947	SND1	100	99.231	ENSSBOG00000032461	SND1	100	99.231	Saimiri_boliviensis_boliviensis
ENSPPAG00000042947	SND1	99	93.213	ENSSHAG00000015359	SND1	100	92.793	Sarcophilus_harrisii
ENSPPAG00000042947	SND1	99	83.333	ENSSFOG00015001103	snd1	99	82.561	Scleropages_formosus
ENSPPAG00000042947	SND1	99	83.860	ENSSMAG00000001932	snd1	93	83.630	Scophthalmus_maximus
ENSPPAG00000042947	SND1	99	84.650	ENSSDUG00000002699	snd1	93	83.481	Seriola_dumerili
ENSPPAG00000042947	SND1	100	76.316	ENSSLDG00000001950	snd1	99	76.164	Seriola_lalandi_dorsalis
ENSPPAG00000042947	SND1	88	96.226	ENSSARG00000004877	SND1	92	96.226	Sorex_araneus
ENSPPAG00000042947	SND1	75	87.543	ENSSPUG00000017586	SND1	96	87.826	Sphenodon_punctatus
ENSPPAG00000042947	SND1	74	86.903	ENSSPAG00000021398	snd1	96	86.911	Stegastes_partitus
ENSPPAG00000042947	SND1	100	98.791	ENSSSCG00000016590	SND1	100	98.791	Sus_scrofa
ENSPPAG00000042947	SND1	99	85.098	ENSTRUG00000014067	snd1	99	82.759	Takifugu_rubripes
ENSPPAG00000042947	SND1	100	83.224	ENSTNIG00000011019	snd1	95	87.392	Tetraodon_nigroviridis
ENSPPAG00000042947	SND1	95	93.042	ENSTBEG00000003999	SND1	100	93.042	Tupaia_belangeri
ENSPPAG00000042947	SND1	100	94.176	ENSTTRG00000006059	SND1	100	94.176	Tursiops_truncatus
ENSPPAG00000042947	SND1	71	90.390	ENSUAMG00000002820	-	86	90.323	Ursus_americanus
ENSPPAG00000042947	SND1	92	98.669	ENSUAMG00000005604	-	93	98.669	Ursus_americanus
ENSPPAG00000042947	SND1	100	98.901	ENSUMAG00000005960	SND1	100	98.901	Ursus_maritimus
ENSPPAG00000042947	SND1	78	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSPPAG00000042947	SND1	100	98.901	ENSVVUG00000007226	SND1	100	98.901	Vulpes_vulpes
ENSPPAG00000042947	SND1	99	84.633	ENSXETG00000023043	snd1	100	85.566	Xenopus_tropicalis
ENSPPAG00000042947	SND1	94	81.710	ENSXCOG00000013629	snd1	99	81.710	Xiphophorus_couchianus
ENSPPAG00000042947	SND1	99	85.214	ENSXMAG00000011469	snd1	99	85.095	Xiphophorus_maculatus