EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPAG00000043296 (Gene tree)
Gene ID: 100983543
Gene Symbol: SMG6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Minus strand
Length: 241906 bases
Position: chr17:1937630-2179535
Accession: 100983543
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000041373	EST1	PF10374.9	1e-14	1	1
ENSPPAP00000041373	EST1_DNA_bind	PF10373.9	2.4e-60	1	1
ENSPPAP00000041373	PIN_4	PF13638.6	1.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000064299	SMG6-201	5950	XM_003816861	ENSPPAP00000041373	1419 (aa)	XP_003816909	A0A2R9CK46

Gene Model

Click here to download ENSPPAG00000043296's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000043296's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000043296	SMG6	100	98.168	ENSG00000070366	SMG6	100	100.000	Homo_sapiens
ENSPPAG00000043296	SMG6	83	54.659	ENSAPOG00000019448	smg6	74	54.836	Acanthochromis_polyacanthus
ENSPPAG00000043296	SMG6	100	93.587	ENSAMEG00000007632	SMG6	100	93.587	Ailuropoda_melanoleuca
ENSPPAG00000043296	SMG6	72	60.388	ENSACIG00000012997	smg6	98	49.149	Amphilophus_citrinellus
ENSPPAG00000043296	SMG6	71	59.395	ENSAOCG00000002630	smg6	74	54.922	Amphiprion_ocellaris
ENSPPAG00000043296	SMG6	71	59.487	ENSAPEG00000019101	smg6	74	55.078	Amphiprion_percula
ENSPPAG00000043296	SMG6	86	54.504	ENSATEG00000006483	smg6	73	54.814	Anabas_testudineus
ENSPPAG00000043296	SMG6	87	57.717	ENSACAG00000011783	SMG6	99	58.694	Anolis_carolinensis
ENSPPAG00000043296	SMG6	100	96.265	ENSANAG00000035760	SMG6	100	96.265	Aotus_nancymaae
ENSPPAG00000043296	SMG6	71	59.171	ENSACLG00000005288	smg6	86	52.899	Astatotilapia_calliptera
ENSPPAG00000043296	SMG6	68	63.169	ENSAMXG00000017326	smg6	99	50.275	Astyanax_mexicanus
ENSPPAG00000043296	SMG6	100	93.094	ENSBTAG00000000267	SMG6	100	93.094	Bos_taurus
ENSPPAG00000043296	SMG6	100	95.772	ENSCJAG00000001820	SMG6	100	95.772	Callithrix_jacchus
ENSPPAG00000043296	SMG6	100	93.517	ENSCAFG00000019260	SMG6	100	93.517	Canis_familiaris
ENSPPAG00000043296	SMG6	100	93.517	ENSCAFG00020009770	SMG6	100	93.517	Canis_lupus_dingo
ENSPPAG00000043296	SMG6	100	93.023	ENSCHIG00000021998	SMG6	100	93.023	Capra_hircus
ENSPPAG00000043296	SMG6	100	94.010	ENSTSYG00000003406	SMG6	100	97.456	Carlito_syrichta
ENSPPAG00000043296	SMG6	98	77.482	ENSCAPG00000016197	SMG6	99	82.904	Cavia_aperea
ENSPPAG00000043296	SMG6	100	91.127	ENSCPOG00000014878	SMG6	100	91.127	Cavia_porcellus
ENSPPAG00000043296	SMG6	100	96.335	ENSCCAG00000035801	SMG6	100	96.335	Cebus_capucinus
ENSPPAG00000043296	SMG6	100	97.533	ENSCATG00000031956	SMG6	100	97.533	Cercocebus_atys
ENSPPAG00000043296	SMG6	100	92.812	ENSCLAG00000006748	SMG6	100	92.812	Chinchilla_lanigera
ENSPPAG00000043296	SMG6	100	98.027	ENSCSAG00000013800	SMG6	100	98.027	Chlorocebus_sabaeus
ENSPPAG00000043296	SMG6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSPPAG00000043296	SMG6	100	72.153	ENSCPBG00000020369	SMG6	100	72.708	Chrysemys_picta_bellii
ENSPPAG00000043296	SMG6	98	97.912	ENSCANG00000031764	SMG6	100	99.217	Colobus_angolensis_palliatus
ENSPPAG00000043296	SMG6	55	87.724	ENSCGRG00001019595	Smg6	98	87.724	Cricetulus_griseus_chok1gshd
ENSPPAG00000043296	SMG6	98	85.014	ENSCGRG00000007782	Smg6	100	85.159	Cricetulus_griseus_crigri
ENSPPAG00000043296	SMG6	100	51.944	ENSCSEG00000012757	smg6	93	52.059	Cynoglossus_semilaevis
ENSPPAG00000043296	SMG6	72	57.376	ENSCVAG00000012789	smg6	74	53.454	Cyprinodon_variegatus
ENSPPAG00000043296	SMG6	96	55.831	ENSDARG00000100481	smg6	90	56.350	Danio_rerio
ENSPPAG00000043296	SMG6	100	92.882	ENSDNOG00000048283	SMG6	100	92.882	Dasypus_novemcinctus
ENSPPAG00000043296	SMG6	100	89.193	ENSDORG00000016614	Smg6	94	98.198	Dipodomys_ordii
ENSPPAG00000043296	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSPPAG00000043296	SMG6	68	49.806	ENSEBUG00000005059	smg6	66	49.709	Eptatretus_burgeri
ENSPPAG00000043296	SMG6	99	94.284	ENSEASG00005009318	SMG6	99	94.284	Equus_asinus_asinus
ENSPPAG00000043296	SMG6	99	94.001	ENSECAG00000006519	SMG6	99	94.001	Equus_caballus
ENSPPAG00000043296	SMG6	100	82.311	ENSEEUG00000003493	SMG6	100	82.311	Erinaceus_europaeus
ENSPPAG00000043296	SMG6	71	60.278	ENSELUG00000005934	smg6	69	55.318	Esox_lucius
ENSPPAG00000043296	SMG6	100	94.785	ENSFCAG00000028817	SMG6	100	94.785	Felis_catus
ENSPPAG00000043296	SMG6	98	71.642	ENSFALG00000006538	SMG6	100	71.713	Ficedula_albicollis
ENSPPAG00000043296	SMG6	100	92.459	ENSFDAG00000015106	SMG6	100	92.459	Fukomys_damarensis
ENSPPAG00000043296	SMG6	83	52.685	ENSFHEG00000013282	smg6	75	53.110	Fundulus_heteroclitus
ENSPPAG00000043296	SMG6	53	69.159	ENSGMOG00000019077	smg6	68	69.159	Gadus_morhua
ENSPPAG00000043296	SMG6	100	71.478	ENSGALG00000003108	SMG6	98	71.548	Gallus_gallus
ENSPPAG00000043296	SMG6	83	53.683	ENSGAFG00000000379	smg6	74	54.141	Gambusia_affinis
ENSPPAG00000043296	SMG6	91	54.275	ENSGACG00000020521	smg6	100	53.659	Gasterosteus_aculeatus
ENSPPAG00000043296	SMG6	98	71.784	ENSGAGG00000025617	SMG6	100	72.353	Gopherus_agassizii
ENSPPAG00000043296	SMG6	100	99.295	ENSGGOG00000017156	SMG6	100	99.295	Gorilla_gorilla
ENSPPAG00000043296	SMG6	85	53.623	ENSHBUG00000021311	smg6	74	55.477	Haplochromis_burtoni
ENSPPAG00000043296	SMG6	100	92.118	ENSHGLG00000012882	SMG6	100	92.118	Heterocephalus_glaber_female
ENSPPAG00000043296	SMG6	100	92.189	ENSHGLG00100017815	SMG6	100	92.189	Heterocephalus_glaber_male
ENSPPAG00000043296	SMG6	71	58.874	ENSHCOG00000008761	smg6	97	53.323	Hippocampus_comes
ENSPPAG00000043296	SMG6	83	55.110	ENSIPUG00000012493	smg6	75	54.424	Ictalurus_punctatus
ENSPPAG00000043296	SMG6	100	94.292	ENSSTOG00000028127	SMG6	100	94.292	Ictidomys_tridecemlineatus
ENSPPAG00000043296	SMG6	79	89.206	ENSJJAG00000015367	Smg6	95	87.262	Jaculus_jaculus
ENSPPAG00000043296	SMG6	73	58.977	ENSKMAG00000000279	smg6	76	53.787	Kryptolebias_marmoratus
ENSPPAG00000043296	SMG6	55	58.486	ENSLACG00000000806	-	98	59.606	Latimeria_chalumnae
ENSPPAG00000043296	SMG6	73	65.201	ENSLOCG00000006448	smg6	100	55.024	Lepisosteus_oculatus
ENSPPAG00000043296	SMG6	100	93.094	ENSLAFG00000001261	SMG6	100	93.094	Loxodonta_africana
ENSPPAG00000043296	SMG6	100	97.956	ENSMFAG00000003394	SMG6	100	97.956	Macaca_fascicularis
ENSPPAG00000043296	SMG6	100	97.886	ENSMMUG00000023161	SMG6	100	97.886	Macaca_mulatta
ENSPPAG00000043296	SMG6	100	92.832	ENSMNEG00000044592	SMG6	100	92.832	Macaca_nemestrina
ENSPPAG00000043296	SMG6	98	95.458	ENSMLEG00000029353	SMG6	99	95.458	Mandrillus_leucophaeus
ENSPPAG00000043296	SMG6	83	55.850	ENSMAMG00000020119	smg6	98	49.614	Mastacembelus_armatus
ENSPPAG00000043296	SMG6	71	59.191	ENSMZEG00005024736	smg6	80	53.057	Maylandia_zebra
ENSPPAG00000043296	SMG6	73	65.847	ENSMGAG00000005401	-	99	65.847	Meleagris_gallopavo
ENSPPAG00000043296	SMG6	100	95.490	ENSMICG00000012913	SMG6	100	95.490	Microcebus_murinus
ENSPPAG00000043296	SMG6	100	47.826	ENSMMOG00000010883	smg6	100	48.282	Mola_mola
ENSPPAG00000043296	SMG6	100	86.146	ENSMODG00000010622	SMG6	100	86.146	Monodelphis_domestica
ENSPPAG00000043296	SMG6	83	54.545	ENSMALG00000001106	smg6	73	54.969	Monopterus_albus
ENSPPAG00000043296	SMG6	100	91.543	MGP_CAROLIEiJ_G0016729	Smg6	100	91.543	Mus_caroli
ENSPPAG00000043296	SMG6	100	91.332	ENSMUSG00000038290	Smg6	100	91.332	Mus_musculus
ENSPPAG00000043296	SMG6	100	90.980	MGP_PahariEiJ_G0017866	Smg6	100	90.980	Mus_pahari
ENSPPAG00000043296	SMG6	100	91.332	MGP_SPRETEiJ_G0017572	Smg6	100	91.332	Mus_spretus
ENSPPAG00000043296	SMG6	100	93.728	ENSMPUG00000013046	SMG6	100	93.728	Mustela_putorius_furo
ENSPPAG00000043296	SMG6	100	93.094	ENSMLUG00000005739	SMG6	100	93.094	Myotis_lucifugus
ENSPPAG00000043296	SMG6	98	91.145	ENSNGAG00000007287	Smg6	100	91.145	Nannospalax_galili
ENSPPAG00000043296	SMG6	85	52.955	ENSNBRG00000009511	smg6	87	52.475	Neolamprologus_brichardi
ENSPPAG00000043296	SMG6	98	97.991	ENSNLEG00000017171	SMG6	100	99.804	Nomascus_leucogenys
ENSPPAG00000043296	SMG6	98	82.184	ENSMEUG00000015804	SMG6	100	82.184	Notamacropus_eugenii
ENSPPAG00000043296	SMG6	62	91.403	ENSOPRG00000000579	SMG6	85	97.368	Ochotona_princeps
ENSPPAG00000043296	SMG6	100	84.680	ENSODEG00000008038	SMG6	100	84.680	Octodon_degus
ENSPPAG00000043296	SMG6	100	51.072	ENSONIG00000005594	smg6	100	52.035	Oreochromis_niloticus
ENSPPAG00000043296	SMG6	100	93.385	ENSOCUG00000013018	SMG6	100	93.596	Oryctolagus_cuniculus
ENSPPAG00000043296	SMG6	94	54.131	ENSORLG00000003317	smg6	85	54.553	Oryzias_latipes
ENSPPAG00000043296	SMG6	94	53.980	ENSORLG00020015343	smg6	74	54.239	Oryzias_latipes_hni
ENSPPAG00000043296	SMG6	94	53.931	ENSORLG00015020454	smg6	85	54.353	Oryzias_latipes_hsok
ENSPPAG00000043296	SMG6	83	53.381	ENSOMEG00000010838	smg6	75	53.858	Oryzias_melastigma
ENSPPAG00000043296	SMG6	100	95.000	ENSOGAG00000004483	SMG6	100	95.000	Otolemur_garnettii
ENSPPAG00000043296	SMG6	100	91.268	ENSOARG00000015076	SMG6	100	92.852	Ovis_aries
ENSPPAG00000043296	SMG6	100	94.856	ENSPPRG00000014581	SMG6	100	94.856	Panthera_pardus
ENSPPAG00000043296	SMG6	98	94.946	ENSPTIG00000008925	SMG6	100	98.043	Panthera_tigris_altaica
ENSPPAG00000043296	SMG6	100	99.436	ENSPTRG00000008544	SMG6	100	100.000	Pan_troglodytes
ENSPPAG00000043296	SMG6	100	97.886	ENSPANG00000024588	SMG6	100	97.886	Papio_anubis
ENSPPAG00000043296	SMG6	89	70.703	ENSPSIG00000006660	SMG6	96	70.781	Pelodiscus_sinensis
ENSPPAG00000043296	SMG6	100	49.768	ENSPMGG00000000844	smg6	100	60.870	Periophthalmus_magnuspinnatus
ENSPPAG00000043296	SMG6	100	92.459	ENSPEMG00000020707	Smg6	100	92.459	Peromyscus_maniculatus_bairdii
ENSPPAG00000043296	SMG6	100	51.371	ENSPFOG00000012035	smg6	100	51.406	Poecilia_formosa
ENSPPAG00000043296	SMG6	77	56.384	ENSPLAG00000017660	smg6	74	54.039	Poecilia_latipinna
ENSPPAG00000043296	SMG6	77	56.277	ENSPMEG00000000258	smg6	74	54.353	Poecilia_mexicana
ENSPPAG00000043296	SMG6	83	54.118	ENSPREG00000010066	smg6	74	54.190	Poecilia_reticulata
ENSPPAG00000043296	SMG6	100	93.038	ENSPPYG00000007790	SMG6	100	93.038	Pongo_abelii
ENSPPAG00000043296	SMG6	100	88.443	ENSPCAG00000000552	SMG6	100	88.443	Procavia_capensis
ENSPPAG00000043296	SMG6	100	95.349	ENSPCOG00000020925	SMG6	100	95.349	Propithecus_coquereli
ENSPPAG00000043296	SMG6	86	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSPPAG00000043296	SMG6	85	54.495	ENSPNYG00000024151	smg6	86	54.873	Pundamilia_nyererei
ENSPPAG00000043296	SMG6	85	52.932	ENSPNAG00000015480	smg6	87	62.877	Pygocentrus_nattereri
ENSPPAG00000043296	SMG6	100	91.825	ENSRNOG00000003041	Smg6	100	91.825	Rattus_norvegicus
ENSPPAG00000043296	SMG6	100	97.956	ENSRBIG00000024746	SMG6	100	97.956	Rhinopithecus_bieti
ENSPPAG00000043296	SMG6	100	97.886	ENSRROG00000030423	SMG6	100	98.826	Rhinopithecus_roxellana
ENSPPAG00000043296	SMG6	100	96.124	ENSSBOG00000022518	SMG6	100	94.503	Saimiri_boliviensis_boliviensis
ENSPPAG00000043296	SMG6	98	85.438	ENSSHAG00000010045	SMG6	98	85.438	Sarcophilus_harrisii
ENSPPAG00000043296	SMG6	72	62.233	ENSSFOG00015005436	smg6	75	54.418	Scleropages_formosus
ENSPPAG00000043296	SMG6	83	55.089	ENSSMAG00000019777	smg6	73	54.560	Scophthalmus_maximus
ENSPPAG00000043296	SMG6	89	52.616	ENSSDUG00000016412	smg6	79	52.578	Seriola_dumerili
ENSPPAG00000043296	SMG6	80	54.008	ENSSLDG00000020747	smg6	77	53.883	Seriola_lalandi_dorsalis
ENSPPAG00000043296	SMG6	99	70.174	ENSSPUG00000007152	SMG6	99	70.174	Sphenodon_punctatus
ENSPPAG00000043296	SMG6	71	59.083	ENSSPAG00000015633	smg6	91	48.592	Stegastes_partitus
ENSPPAG00000043296	SMG6	100	92.676	ENSSSCG00000017826	SMG6	100	92.676	Sus_scrofa
ENSPPAG00000043296	SMG6	100	72.090	ENSTGUG00000005836	SMG6	100	72.230	Taeniopygia_guttata
ENSPPAG00000043296	SMG6	100	47.954	ENSTRUG00000000358	smg6	100	48.003	Takifugu_rubripes
ENSPPAG00000043296	SMG6	100	49.669	ENSTNIG00000016164	smg6	100	50.132	Tetraodon_nigroviridis
ENSPPAG00000043296	SMG6	100	89.570	ENSTBEG00000011424	SMG6	100	89.570	Tupaia_belangeri
ENSPPAG00000043296	SMG6	91	91.818	ENSTTRG00000001175	SMG6	91	91.818	Tursiops_truncatus
ENSPPAG00000043296	SMG6	100	93.812	ENSUAMG00000025152	SMG6	100	93.804	Ursus_americanus
ENSPPAG00000043296	SMG6	98	94.152	ENSUMAG00000009306	SMG6	100	94.152	Ursus_maritimus
ENSPPAG00000043296	SMG6	85	92.593	ENSVPAG00000000225	SMG6	88	92.593	Vicugna_pacos
ENSPPAG00000043296	SMG6	100	93.376	ENSVVUG00000021727	SMG6	100	93.376	Vulpes_vulpes
ENSPPAG00000043296	SMG6	98	59.619	ENSXETG00000023799	SMG6	100	59.187	Xenopus_tropicalis
ENSPPAG00000043296	SMG6	72	59.889	ENSXCOG00000009867	smg6	74	55.175	Xiphophorus_couchianus
ENSPPAG00000043296	SMG6	83	54.304	ENSXMAG00000010321	smg6	74	54.375	Xiphophorus_maculatus