EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPAG00000043355 (Gene tree)
Gene ID: 100977233
Gene Symbol: CPSF4
Alias: -
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Plus strand
Length: 18693 bases
Position: chr7:104914077-104932769
Accession: 100977233
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000041477	zf-CCCH	PF00642.24	4.9e-20	1	2
ENSPPAP00000041477	zf-CCCH	PF00642.24	4.9e-20	2	2
ENSPPAP00000041482	zf-CCCH	PF00642.24	2e-15	1	2
ENSPPAP00000041482	zf-CCCH	PF00642.24	2e-15	2	2
ENSPPAP00000041482	zf-CCHC	PF00098.23	4.6e-06	1	1
ENSPPAP00000041477	zf-CCHC	PF00098.23	6.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000064408	CPSF4-202	636	-	ENSPPAP00000041482	211 (aa)	-	A0A2R9CR91
ENSPPAT00000064403	CPSF4-201	1824	XM_003815712	ENSPPAP00000041477	269 (aa)	XP_003815760	A0A2R9CR90

Gene Model

Click here to download ENSPPAG00000043355's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps03015	mRNA surveillance pathway	KEGG
pps05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000043355's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPAG00000043355	CPSF4	52	68.794	ENSPPAG00000037000	-	90	72.727

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000043355	CPSF4	100	99.628	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSPPAG00000043355	CPSF4	67	74.176	ENSAPOG00000004921	cpsf4	100	74.176	Acanthochromis_polyacanthus
ENSPPAG00000043355	CPSF4	100	98.885	ENSAMEG00000006252	CPSF4	100	98.885	Ailuropoda_melanoleuca
ENSPPAG00000043355	CPSF4	100	78.810	ENSACIG00000009248	cpsf4	100	77.695	Amphilophus_citrinellus
ENSPPAG00000043355	CPSF4	100	84.815	ENSAOCG00000019616	cpsf4	100	84.815	Amphiprion_ocellaris
ENSPPAG00000043355	CPSF4	100	84.815	ENSAPEG00000011679	cpsf4	100	84.815	Amphiprion_percula
ENSPPAG00000043355	CPSF4	100	84.191	ENSATEG00000007010	cpsf4	100	84.191	Anabas_testudineus
ENSPPAG00000043355	CPSF4	100	93.680	ENSACAG00000012941	CPSF4	89	93.680	Anolis_carolinensis
ENSPPAG00000043355	CPSF4	100	99.628	ENSANAG00000021360	CPSF4	100	99.628	Aotus_nancymaae
ENSPPAG00000043355	CPSF4	100	84.074	ENSACLG00000010374	cpsf4	100	84.074	Astatotilapia_calliptera
ENSPPAG00000043355	CPSF4	100	85.782	ENSAMXG00000031647	cpsf4	100	85.978	Astyanax_mexicanus
ENSPPAG00000043355	CPSF4	100	89.219	ENSBTAG00000002090	CPSF4	100	89.219	Bos_taurus
ENSPPAG00000043355	CPSF4	100	99.628	ENSCJAG00000015826	CPSF4	100	99.628	Callithrix_jacchus
ENSPPAG00000043355	CPSF4	100	98.513	ENSCAFG00000015036	CPSF4	100	98.513	Canis_familiaris
ENSPPAG00000043355	CPSF4	100	92.193	ENSCAFG00020014462	CPSF4	100	92.193	Canis_lupus_dingo
ENSPPAG00000043355	CPSF4	100	98.885	ENSCHIG00000014313	CPSF4	100	98.885	Capra_hircus
ENSPPAG00000043355	CPSF4	85	88.950	ENSTSYG00000008195	-	100	88.950	Carlito_syrichta
ENSPPAG00000043355	CPSF4	100	98.578	ENSTSYG00000005712	-	100	98.578	Carlito_syrichta
ENSPPAG00000043355	CPSF4	100	87.793	ENSTSYG00000014604	-	100	87.793	Carlito_syrichta
ENSPPAG00000043355	CPSF4	81	98.624	ENSCAPG00000013881	CPSF4	87	98.624	Cavia_aperea
ENSPPAG00000043355	CPSF4	100	98.578	ENSCPOG00000001783	CPSF4	100	98.578	Cavia_porcellus
ENSPPAG00000043355	CPSF4	100	99.628	ENSCCAG00000028291	CPSF4	100	99.628	Cebus_capucinus
ENSPPAG00000043355	CPSF4	100	99.628	ENSCATG00000038440	CPSF4	100	99.628	Cercocebus_atys
ENSPPAG00000043355	CPSF4	100	98.885	ENSCLAG00000007050	CPSF4	100	98.885	Chinchilla_lanigera
ENSPPAG00000043355	CPSF4	100	99.628	ENSCSAG00000017795	CPSF4	100	99.628	Chlorocebus_sabaeus
ENSPPAG00000043355	CPSF4	61	81.212	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSPPAG00000043355	CPSF4	80	96.296	ENSCPBG00000020869	CPSF4	100	96.296	Chrysemys_picta_bellii
ENSPPAG00000043355	CPSF4	97	55.939	ENSCING00000021080	-	97	55.939	Ciona_intestinalis
ENSPPAG00000043355	CPSF4	96	53.546	ENSCSAVG00000011469	-	97	53.546	Ciona_savignyi
ENSPPAG00000043355	CPSF4	100	99.628	ENSCANG00000019384	CPSF4	100	99.628	Colobus_angolensis_palliatus
ENSPPAG00000043355	CPSF4	100	98.578	ENSCGRG00001024184	Cpsf4	100	98.578	Cricetulus_griseus_chok1gshd
ENSPPAG00000043355	CPSF4	100	98.885	ENSCGRG00000013892	Cpsf4	100	98.885	Cricetulus_griseus_crigri
ENSPPAG00000043355	CPSF4	100	84.360	ENSCSEG00000019055	cpsf4	100	84.360	Cynoglossus_semilaevis
ENSPPAG00000043355	CPSF4	100	83.333	ENSCVAG00000016528	cpsf4	100	83.333	Cyprinodon_variegatus
ENSPPAG00000043355	CPSF4	100	85.240	ENSDARG00000020217	cpsf4	100	85.240	Danio_rerio
ENSPPAG00000043355	CPSF4	100	99.257	ENSDNOG00000006344	CPSF4	100	99.257	Dasypus_novemcinctus
ENSPPAG00000043355	CPSF4	81	98.157	ENSDORG00000000742	Cpsf4	100	98.157	Dipodomys_ordii
ENSPPAG00000043355	CPSF4	100	54.110	FBgn0015621	Clp	99	54.110	Drosophila_melanogaster
ENSPPAG00000043355	CPSF4	73	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSPPAG00000043355	CPSF4	99	65.169	ENSEBUG00000012552	cpsf4	98	65.169	Eptatretus_burgeri
ENSPPAG00000043355	CPSF4	100	89.591	ENSEASG00005002487	CPSF4	100	89.591	Equus_asinus_asinus
ENSPPAG00000043355	CPSF4	100	98.885	ENSECAG00000007525	CPSF4	100	98.885	Equus_caballus
ENSPPAG00000043355	CPSF4	68	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSPPAG00000043355	CPSF4	100	82.847	ENSELUG00000011481	cpsf4	100	82.847	Esox_lucius
ENSPPAG00000043355	CPSF4	100	98.885	ENSFCAG00000015070	CPSF4	100	98.885	Felis_catus
ENSPPAG00000043355	CPSF4	100	86.245	ENSFALG00000013799	CPSF4	100	86.245	Ficedula_albicollis
ENSPPAG00000043355	CPSF4	61	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSPPAG00000043355	CPSF4	90	97.942	ENSFDAG00000014092	CPSF4	100	97.942	Fukomys_damarensis
ENSPPAG00000043355	CPSF4	100	83.333	ENSFHEG00000010880	cpsf4	100	83.333	Fundulus_heteroclitus
ENSPPAG00000043355	CPSF4	100	77.491	ENSGMOG00000002330	cpsf4	100	76.015	Gadus_morhua
ENSPPAG00000043355	CPSF4	100	86.245	ENSGALG00000004714	CPSF4	100	85.130	Gallus_gallus
ENSPPAG00000043355	CPSF4	99	38.947	ENSGALG00000004441	-	98	32.174	Gallus_gallus
ENSPPAG00000043355	CPSF4	100	82.222	ENSGAFG00000010580	cpsf4	100	82.222	Gambusia_affinis
ENSPPAG00000043355	CPSF4	100	77.122	ENSGACG00000007792	cpsf4	100	76.384	Gasterosteus_aculeatus
ENSPPAG00000043355	CPSF4	68	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSPPAG00000043355	CPSF4	100	96.283	ENSGAGG00000021835	CPSF4	100	96.283	Gopherus_agassizii
ENSPPAG00000043355	CPSF4	100	99.628	ENSGGOG00000015131	CPSF4	100	99.628	Gorilla_gorilla
ENSPPAG00000043355	CPSF4	100	84.074	ENSHBUG00000013699	cpsf4	100	84.074	Haplochromis_burtoni
ENSPPAG00000043355	CPSF4	100	98.104	ENSHGLG00000017150	CPSF4	100	98.104	Heterocephalus_glaber_female
ENSPPAG00000043355	CPSF4	87	94.915	ENSHGLG00100009215	-	100	95.455	Heterocephalus_glaber_male
ENSPPAG00000043355	CPSF4	100	70.616	ENSHGLG00100017302	-	100	68.720	Heterocephalus_glaber_male
ENSPPAG00000043355	CPSF4	100	80.741	ENSHCOG00000004397	cpsf4	100	80.741	Hippocampus_comes
ENSPPAG00000043355	CPSF4	100	84.133	ENSIPUG00000017147	cpsf4	100	85.294	Ictalurus_punctatus
ENSPPAG00000043355	CPSF4	100	98.885	ENSSTOG00000001688	CPSF4	100	98.885	Ictidomys_tridecemlineatus
ENSPPAG00000043355	CPSF4	100	98.885	ENSJJAG00000019426	Cpsf4	100	98.885	Jaculus_jaculus
ENSPPAG00000043355	CPSF4	100	81.852	ENSKMAG00000015642	cpsf4	100	81.852	Kryptolebias_marmoratus
ENSPPAG00000043355	CPSF4	100	60.741	ENSLACG00000018470	-	100	60.741	Latimeria_chalumnae
ENSPPAG00000043355	CPSF4	100	89.259	ENSLACG00000010938	CPSF4	100	89.259	Latimeria_chalumnae
ENSPPAG00000043355	CPSF4	100	89.219	ENSLOCG00000004814	cpsf4	100	89.219	Lepisosteus_oculatus
ENSPPAG00000043355	CPSF4	100	98.513	ENSLAFG00000000159	CPSF4	100	98.513	Loxodonta_africana
ENSPPAG00000043355	CPSF4	100	99.628	ENSMFAG00000001462	CPSF4	100	99.628	Macaca_fascicularis
ENSPPAG00000043355	CPSF4	100	99.628	ENSMMUG00000019191	CPSF4	100	99.628	Macaca_mulatta
ENSPPAG00000043355	CPSF4	100	99.628	ENSMNEG00000032306	CPSF4	100	99.628	Macaca_nemestrina
ENSPPAG00000043355	CPSF4	100	99.628	ENSMLEG00000034721	CPSF4	100	99.628	Mandrillus_leucophaeus
ENSPPAG00000043355	CPSF4	100	84.074	ENSMAMG00000006244	cpsf4	100	84.074	Mastacembelus_armatus
ENSPPAG00000043355	CPSF4	100	84.074	ENSMZEG00005007515	cpsf4	100	84.074	Maylandia_zebra
ENSPPAG00000043355	CPSF4	87	84.681	ENSMGAG00000004235	CPSF4	100	83.404	Meleagris_gallopavo
ENSPPAG00000043355	CPSF4	100	98.885	ENSMAUG00000021253	Cpsf4	100	98.885	Mesocricetus_auratus
ENSPPAG00000043355	CPSF4	100	99.257	ENSMICG00000017429	CPSF4	100	99.257	Microcebus_murinus
ENSPPAG00000043355	CPSF4	100	98.885	ENSMOCG00000014901	Cpsf4	100	98.885	Microtus_ochrogaster
ENSPPAG00000043355	CPSF4	100	85.308	ENSMMOG00000001813	cpsf4	100	85.308	Mola_mola
ENSPPAG00000043355	CPSF4	100	98.141	ENSMODG00000001367	CPSF4	100	98.141	Monodelphis_domestica
ENSPPAG00000043355	CPSF4	100	82.593	ENSMALG00000012611	cpsf4	100	82.593	Monopterus_albus
ENSPPAG00000043355	CPSF4	100	98.885	MGP_CAROLIEiJ_G0028012	Cpsf4	100	98.885	Mus_caroli
ENSPPAG00000043355	CPSF4	100	98.885	ENSMUSG00000029625	Cpsf4	100	98.885	Mus_musculus
ENSPPAG00000043355	CPSF4	100	98.885	MGP_PahariEiJ_G0024581	Cpsf4	100	98.885	Mus_pahari
ENSPPAG00000043355	CPSF4	100	99.257	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.257	Mus_spretus
ENSPPAG00000043355	CPSF4	100	98.885	ENSMPUG00000016508	CPSF4	100	98.885	Mustela_putorius_furo
ENSPPAG00000043355	CPSF4	87	87.234	ENSMLUG00000010980	CPSF4	100	87.234	Myotis_lucifugus
ENSPPAG00000043355	CPSF4	100	98.885	ENSNGAG00000001567	Cpsf4	100	98.885	Nannospalax_galili
ENSPPAG00000043355	CPSF4	91	83.740	ENSNBRG00000003943	cpsf4	98	83.740	Neolamprologus_brichardi
ENSPPAG00000043355	CPSF4	100	99.526	ENSNLEG00000011074	CPSF4	100	99.526	Nomascus_leucogenys
ENSPPAG00000043355	CPSF4	100	98.141	ENSMEUG00000006955	CPSF4	100	98.141	Notamacropus_eugenii
ENSPPAG00000043355	CPSF4	100	98.513	ENSOPRG00000013663	CPSF4	100	98.513	Ochotona_princeps
ENSPPAG00000043355	CPSF4	100	74.359	ENSODEG00000009779	-	100	74.359	Octodon_degus
ENSPPAG00000043355	CPSF4	100	98.885	ENSODEG00000011181	-	100	98.885	Octodon_degus
ENSPPAG00000043355	CPSF4	98	78.302	ENSODEG00000018283	-	89	78.302	Octodon_degus
ENSPPAG00000043355	CPSF4	100	84.074	ENSONIG00000008495	cpsf4	100	84.074	Oreochromis_niloticus
ENSPPAG00000043355	CPSF4	100	54.480	ENSOANG00000009568	-	100	52.518	Ornithorhynchus_anatinus
ENSPPAG00000043355	CPSF4	87	96.596	ENSOANG00000007729	CPSF4	100	96.596	Ornithorhynchus_anatinus
ENSPPAG00000043355	CPSF4	100	98.513	ENSOCUG00000002437	CPSF4	70	98.513	Oryctolagus_cuniculus
ENSPPAG00000043355	CPSF4	100	83.271	ENSORLG00000022798	cpsf4	100	83.271	Oryzias_latipes
ENSPPAG00000043355	CPSF4	100	83.271	ENSORLG00020008548	cpsf4	100	83.271	Oryzias_latipes_hni
ENSPPAG00000043355	CPSF4	100	82.900	ENSORLG00015019575	cpsf4	100	82.900	Oryzias_latipes_hsok
ENSPPAG00000043355	CPSF4	100	83.886	ENSOMEG00000005176	cpsf4	100	83.886	Oryzias_melastigma
ENSPPAG00000043355	CPSF4	100	99.257	ENSOGAG00000010884	CPSF4	100	99.257	Otolemur_garnettii
ENSPPAG00000043355	CPSF4	100	87.912	ENSOARG00000018668	CPSF4	100	87.546	Ovis_aries
ENSPPAG00000043355	CPSF4	100	98.885	ENSPPRG00000003134	CPSF4	100	98.885	Panthera_pardus
ENSPPAG00000043355	CPSF4	90	98.760	ENSPTIG00000005604	CPSF4	90	98.760	Panthera_tigris_altaica
ENSPPAG00000043355	CPSF4	100	100.000	ENSPTRG00000019453	CPSF4	100	100.000	Pan_troglodytes
ENSPPAG00000043355	CPSF4	100	99.628	ENSPANG00000023123	CPSF4	100	99.628	Papio_anubis
ENSPPAG00000043355	CPSF4	100	84.307	ENSPKIG00000014278	cpsf4	100	84.307	Paramormyrops_kingsleyae
ENSPPAG00000043355	CPSF4	80	95.833	ENSPSIG00000011229	CPSF4	100	95.833	Pelodiscus_sinensis
ENSPPAG00000043355	CPSF4	81	58.904	ENSPSIG00000018198	-	100	57.798	Pelodiscus_sinensis
ENSPPAG00000043355	CPSF4	100	73.978	ENSPMGG00000017735	cpsf4	100	71.747	Periophthalmus_magnuspinnatus
ENSPPAG00000043355	CPSF4	100	98.885	ENSPEMG00000004508	Cpsf4	100	98.885	Peromyscus_maniculatus_bairdii
ENSPPAG00000043355	CPSF4	100	98.141	ENSPCIG00000024776	CPSF4	100	98.141	Phascolarctos_cinereus
ENSPPAG00000043355	CPSF4	100	82.222	ENSPFOG00000014912	cpsf4	100	82.222	Poecilia_formosa
ENSPPAG00000043355	CPSF4	100	75.093	ENSPLAG00000009599	cpsf4	100	75.093	Poecilia_latipinna
ENSPPAG00000043355	CPSF4	100	82.222	ENSPMEG00000009790	cpsf4	100	82.222	Poecilia_mexicana
ENSPPAG00000043355	CPSF4	100	81.481	ENSPREG00000018166	cpsf4	100	79.182	Poecilia_reticulata
ENSPPAG00000043355	CPSF4	87	99.573	ENSPPYG00000017378	CPSF4	100	99.573	Pongo_abelii
ENSPPAG00000043355	CPSF4	100	97.770	ENSPCAG00000001892	CPSF4	100	97.770	Procavia_capensis
ENSPPAG00000043355	CPSF4	100	98.885	ENSPCOG00000012771	CPSF4	100	98.885	Propithecus_coquereli
ENSPPAG00000043355	CPSF4	100	92.193	ENSPVAG00000007531	CPSF4	100	92.193	Pteropus_vampyrus
ENSPPAG00000043355	CPSF4	100	84.074	ENSPNYG00000018559	cpsf4	100	84.074	Pundamilia_nyererei
ENSPPAG00000043355	CPSF4	100	86.347	ENSPNAG00000003736	cpsf4	100	87.085	Pygocentrus_nattereri
ENSPPAG00000043355	CPSF4	100	98.578	ENSRNOG00000000985	Cpsf4	100	98.578	Rattus_norvegicus
ENSPPAG00000043355	CPSF4	87	99.573	ENSRBIG00000033886	CPSF4	100	99.573	Rhinopithecus_bieti
ENSPPAG00000043355	CPSF4	100	99.526	ENSRROG00000040431	CPSF4	100	99.526	Rhinopithecus_roxellana
ENSPPAG00000043355	CPSF4	100	99.628	ENSSBOG00000020493	CPSF4	100	99.628	Saimiri_boliviensis_boliviensis
ENSPPAG00000043355	CPSF4	100	98.141	ENSSHAG00000011533	CPSF4	100	98.141	Sarcophilus_harrisii
ENSPPAG00000043355	CPSF4	100	85.507	ENSSFOG00015007883	cpsf4	100	86.232	Scleropages_formosus
ENSPPAG00000043355	CPSF4	100	79.554	ENSSMAG00000006374	cpsf4	100	77.695	Scophthalmus_maximus
ENSPPAG00000043355	CPSF4	100	83.333	ENSSDUG00000018887	cpsf4	100	83.333	Seriola_dumerili
ENSPPAG00000043355	CPSF4	100	83.333	ENSSLDG00000019078	cpsf4	100	83.704	Seriola_lalandi_dorsalis
ENSPPAG00000043355	CPSF4	87	99.145	ENSSARG00000012416	CPSF4	100	99.145	Sorex_araneus
ENSPPAG00000043355	CPSF4	96	59.615	ENSSPUG00000014803	-	97	59.690	Sphenodon_punctatus
ENSPPAG00000043355	CPSF4	100	94.424	ENSSPUG00000003549	CPSF4	100	94.424	Sphenodon_punctatus
ENSPPAG00000043355	CPSF4	100	79.182	ENSSPAG00000006174	cpsf4	100	76.952	Stegastes_partitus
ENSPPAG00000043355	CPSF4	100	89.963	ENSSSCG00000026896	CPSF4	100	89.963	Sus_scrofa
ENSPPAG00000043355	CPSF4	100	85.240	ENSTGUG00000007552	CPSF4	100	83.764	Taeniopygia_guttata
ENSPPAG00000043355	CPSF4	100	81.481	ENSTRUG00000024220	cpsf4	100	81.481	Takifugu_rubripes
ENSPPAG00000043355	CPSF4	100	80.000	ENSTNIG00000006265	cpsf4	100	81.481	Tetraodon_nigroviridis
ENSPPAG00000043355	CPSF4	87	89.744	ENSTBEG00000011406	CPSF4	100	89.744	Tupaia_belangeri
ENSPPAG00000043355	CPSF4	85	100.000	ENSTTRG00000003007	CPSF4	100	78.810	Tursiops_truncatus
ENSPPAG00000043355	CPSF4	92	88.259	ENSUAMG00000008051	CPSF4	85	88.259	Ursus_americanus
ENSPPAG00000043355	CPSF4	100	89.219	ENSUMAG00000009474	CPSF4	100	89.219	Ursus_maritimus
ENSPPAG00000043355	CPSF4	100	89.219	ENSVVUG00000008824	CPSF4	100	89.219	Vulpes_vulpes
ENSPPAG00000043355	CPSF4	100	88.172	ENSXETG00000009892	cpsf4	100	88.172	Xenopus_tropicalis
ENSPPAG00000043355	CPSF4	99	60.821	ENSXETG00000004641	cpsf4l	99	60.821	Xenopus_tropicalis
ENSPPAG00000043355	CPSF4	100	83.886	ENSXCOG00000016040	cpsf4	100	83.886	Xiphophorus_couchianus
ENSPPAG00000043355	CPSF4	100	82.222	ENSXMAG00000024670	cpsf4	100	82.222	Xiphophorus_maculatus