EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPAG00000043367 (Gene tree)
Gene ID: 100972158
Gene Symbol: CHD1
Alias: -
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Minus strand
Length: 69232 bases
Position: chr5:99721032-99790263
Accession: 100972158
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000041565	ResIII	PF04851.15	3.1e-07	1	1
ENSPPAP00000041567	ResIII	PF04851.15	3.2e-07	1	1
ENSPPAP00000041566	ResIII	PF04851.15	3.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000064492	CHD1-202	5100	-	ENSPPAP00000041566	1699 (aa)	-	A0A2R9CHY3
ENSPPAT00000064493	CHD1-203	5097	-	ENSPPAP00000041567	1698 (aa)	-	A0A2R9CRG1
ENSPPAT00000064491	CHD1-201	5064	XM_008971199	ENSPPAP00000041565	1687 (aa)	XP_008969447	A0A2R9CHY4

Gene Model

Click here to download ENSPPAG00000043367's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000043367's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPAG00000043367	CHD1	99	55.709	ENSPPAG00000030381	-	88	60.327

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000043367	CHD1	99	98.294	ENSG00000153922	CHD1	99	98.294	Homo_sapiens
ENSPPAG00000043367	CHD1	68	81.100	ENSAPOG00000005764	chd1	97	81.520	Acanthochromis_polyacanthus
ENSPPAG00000043367	CHD1	90	75.748	ENSAOCG00000023105	chd1	94	76.398	Amphiprion_ocellaris
ENSPPAG00000043367	CHD1	90	76.933	ENSAPEG00000013544	chd1	94	77.583	Amphiprion_percula
ENSPPAG00000043367	CHD1	91	76.200	ENSATEG00000010676	chd1	92	76.633	Anabas_testudineus
ENSPPAG00000043367	CHD1	72	80.619	ENSAMXG00000010843	chd1	91	82.176	Astyanax_mexicanus
ENSPPAG00000043367	CHD1	99	97.826	ENSCATG00000032035	CHD1	100	97.769	Cercocebus_atys
ENSPPAG00000043367	CHD1	99	97.767	ENSCSAG00000015339	CHD1	99	97.767	Chlorocebus_sabaeus
ENSPPAG00000043367	CHD1	100	96.368	ENSCANG00000036916	CHD1	100	96.368	Colobus_angolensis_palliatus
ENSPPAG00000043367	CHD1	99	94.376	ENSCGRG00001023943	Chd1	100	93.019	Cricetulus_griseus_chok1gshd
ENSPPAG00000043367	CHD1	100	93.136	ENSCGRG00000008652	Chd1	100	93.019	Cricetulus_griseus_crigri
ENSPPAG00000043367	CHD1	90	74.464	ENSCSEG00000009553	chd1	92	76.404	Cynoglossus_semilaevis
ENSPPAG00000043367	CHD1	93	87.826	ENSEASG00005016110	CHD1	99	96.365	Equus_asinus_asinus
ENSPPAG00000043367	CHD1	90	77.535	ENSELUG00000017677	chd1	93	77.314	Esox_lucius
ENSPPAG00000043367	CHD1	72	79.903	ENSFHEG00000021164	chd1	87	81.355	Fundulus_heteroclitus
ENSPPAG00000043367	CHD1	97	76.169	ENSGMOG00000001537	chd1	100	64.857	Gadus_morhua
ENSPPAG00000043367	CHD1	93	88.388	ENSGALG00000031327	-	96	88.325	Gallus_gallus
ENSPPAG00000043367	CHD1	84	79.790	ENSGAFG00000019880	chd1	89	81.931	Gambusia_affinis
ENSPPAG00000043367	CHD1	100	94.795	ENSGGOG00000011463	CHD1	100	94.795	Gorilla_gorilla
ENSPPAG00000043367	CHD1	89	77.888	ENSHCOG00000014222	chd1	91	78.371	Hippocampus_comes
ENSPPAG00000043367	CHD1	88	80.467	ENSIPUG00000001369	chd1	92	79.800	Ictalurus_punctatus
ENSPPAG00000043367	CHD1	63	93.216	ENSLAFG00000023183	CHD1	99	93.216	Loxodonta_africana
ENSPPAG00000043367	CHD1	100	97.775	ENSMFAG00000031226	CHD1	100	97.775	Macaca_fascicularis
ENSPPAG00000043367	CHD1	82	97.376	ENSMMUG00000014090	CHD1	98	97.376	Macaca_mulatta
ENSPPAG00000043367	CHD1	100	97.774	ENSMNEG00000045073	CHD1	100	97.774	Macaca_nemestrina
ENSPPAG00000043367	CHD1	100	93.849	ENSMLEG00000041096	CHD1	100	94.259	Mandrillus_leucophaeus
ENSPPAG00000043367	CHD1	73	79.150	ENSMZEG00005010957	chd1	94	79.316	Maylandia_zebra
ENSPPAG00000043367	CHD1	100	90.401	ENSMOCG00000019121	Chd1	100	89.837	Microtus_ochrogaster
ENSPPAG00000043367	CHD1	80	76.991	ENSMALG00000013317	chd1	95	76.957	Monopterus_albus
ENSPPAG00000043367	CHD1	100	91.628	MGP_CAROLIEiJ_G0021099	Chd1	100	92.326	Mus_caroli
ENSPPAG00000043367	CHD1	100	91.977	ENSMUSG00000023852	Chd1	100	92.733	Mus_musculus
ENSPPAG00000043367	CHD1	100	91.570	MGP_PahariEiJ_G0023414	Chd1	100	91.919	Mus_pahari
ENSPPAG00000043367	CHD1	90	74.886	ENSNBRG00000006860	chd1	91	76.447	Neolamprologus_brichardi
ENSPPAG00000043367	CHD1	100	95.746	ENSNLEG00000014493	CHD1	100	95.746	Nomascus_leucogenys
ENSPPAG00000043367	CHD1	100	89.763	ENSOANG00000004891	CHD1	100	92.705	Ornithorhynchus_anatinus
ENSPPAG00000043367	CHD1	60	75.098	ENSORLG00015016725	chd1	93	75.595	Oryzias_latipes_hsok
ENSPPAG00000043367	CHD1	100	98.593	ENSPTRG00000017103	CHD1	100	98.593	Pan_troglodytes
ENSPPAG00000043367	CHD1	100	97.775	ENSPANG00000006387	CHD1	100	97.775	Papio_anubis
ENSPPAG00000043367	CHD1	90	76.963	ENSPKIG00000024719	chd1	92	77.792	Paramormyrops_kingsleyae
ENSPPAG00000043367	CHD1	74	79.984	ENSPMGG00000005785	chd1	93	79.761	Periophthalmus_magnuspinnatus
ENSPPAG00000043367	CHD1	100	92.961	ENSPEMG00000015939	Chd1	100	92.845	Peromyscus_maniculatus_bairdii
ENSPPAG00000043367	CHD1	50	76.061	ENSPLAG00000006473	-	85	77.289	Poecilia_latipinna
ENSPPAG00000043367	CHD1	98	73.178	ENSPREG00000004209	chd1	97	73.770	Poecilia_reticulata
ENSPPAG00000043367	CHD1	83	92.496	ENSRNOG00000014434	Chd1	99	92.356	Rattus_norvegicus
ENSPPAG00000043367	CHD1	100	95.029	ENSRBIG00000044325	CHD1	100	95.029	Rhinopithecus_bieti
ENSPPAG00000043367	CHD1	99	97.535	ENSRROG00000001726	CHD1	100	97.535	Rhinopithecus_roxellana
ENSPPAG00000043367	CHD1	72	80.244	ENSSFOG00015007161	chd1	90	80.922	Scleropages_formosus
ENSPPAG00000043367	CHD1	80	77.199	ENSSDUG00000018314	chd1	94	76.979	Seriola_dumerili
ENSPPAG00000043367	CHD1	52	81.808	ENSSLDG00000017244	chd1	84	84.136	Seriola_lalandi_dorsalis
ENSPPAG00000043367	CHD1	80	77.623	ENSSPAG00000007024	chd1	95	77.036	Stegastes_partitus
ENSPPAG00000043367	CHD1	86	96.322	ENSSSCG00000014177	CHD1	99	96.322	Sus_scrofa
ENSPPAG00000043367	CHD1	91	74.311	ENSTRUG00000010282	chd1	96	72.613	Takifugu_rubripes
ENSPPAG00000043367	CHD1	73	76.275	ENSTNIG00000007101	chd1	95	77.110	Tetraodon_nigroviridis
ENSPPAG00000043367	CHD1	98	71.755	ENSXCOG00000017184	chd1	97	71.334	Xiphophorus_couchianus
ENSPPAG00000043367	CHD1	78	76.493	ENSXMAG00000014538	chd1	94	77.846	Xiphophorus_maculatus