EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPPAG00000043884 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Plus strand
Length: 20500 bases
Position: chr19:19292725-19313224
Accession: 100967567
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000042672	UPF1_Zn_bind	PF09416.10	9.7e-75	1	1
ENSPPAP00000042672	ResIII	PF04851.15	3.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000065602	UPF1-201	3291	XM_008971019	ENSPPAP00000042672	1096 (aa)	XP_008969267	A0A2R9CSY2

Gene Model

Click here to download ENSPPAG00000043884's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000043884's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000043884	UPF1	97	99.065	ENSG00000005007	UPF1	95	99.065	Homo_sapiens
ENSPPAG00000043884	UPF1	96	93.827	ENSAPOG00000010916	-	95	93.922	Acanthochromis_polyacanthus
ENSPPAG00000043884	UPF1	96	92.330	ENSAPOG00000023773	upf1	95	92.519	Acanthochromis_polyacanthus
ENSPPAG00000043884	UPF1	97	98.050	ENSAMEG00000011474	UPF1	96	98.050	Ailuropoda_melanoleuca
ENSPPAG00000043884	UPF1	96	91.989	ENSACIG00000019949	upf1	95	92.453	Amphilophus_citrinellus
ENSPPAG00000043884	UPF1	95	94.015	ENSACIG00000010985	-	100	94.112	Amphilophus_citrinellus
ENSPPAG00000043884	UPF1	96	93.827	ENSAOCG00000006352	-	100	91.426	Amphiprion_ocellaris
ENSPPAG00000043884	UPF1	96	91.817	ENSAOCG00000018519	upf1	95	92.502	Amphiprion_ocellaris
ENSPPAG00000043884	UPF1	96	91.817	ENSAPEG00000016344	upf1	95	92.502	Amphiprion_percula
ENSPPAG00000043884	UPF1	96	93.827	ENSAPEG00000006292	-	100	91.426	Amphiprion_percula
ENSPPAG00000043884	UPF1	96	90.926	ENSATEG00000017867	upf1	95	91.862	Anabas_testudineus
ENSPPAG00000043884	UPF1	96	93.827	ENSATEG00000016606	-	95	93.922	Anabas_testudineus
ENSPPAG00000043884	UPF1	96	98.192	ENSAPLG00000009175	UPF1	99	98.192	Anas_platyrhynchos
ENSPPAG00000043884	UPF1	98	96.673	ENSANAG00000024107	UPF1	98	96.673	Aotus_nancymaae
ENSPPAG00000043884	UPF1	96	91.800	ENSACLG00000007181	upf1	95	92.264	Astatotilapia_calliptera
ENSPPAG00000043884	UPF1	96	93.726	ENSACLG00000022630	-	95	93.726	Astatotilapia_calliptera
ENSPPAG00000043884	UPF1	96	94.207	ENSAMXG00000042187	upf1	95	94.777	Astyanax_mexicanus
ENSPPAG00000043884	UPF1	99	97.608	ENSBTAG00000020922	UPF1	96	97.608	Bos_taurus
ENSPPAG00000043884	UPF1	84	53.055	WBGene00004880	smg-2	94	50.145	Caenorhabditis_elegans
ENSPPAG00000043884	UPF1	97	99.065	ENSCJAG00000019627	UPF1	95	99.065	Callithrix_jacchus
ENSPPAG00000043884	UPF1	97	98.693	ENSCAFG00000014578	UPF1	95	98.693	Canis_familiaris
ENSPPAG00000043884	UPF1	97	97.666	ENSCAFG00020012347	UPF1	95	97.666	Canis_lupus_dingo
ENSPPAG00000043884	UPF1	97	98.692	ENSCHIG00000011018	UPF1	95	98.692	Capra_hircus
ENSPPAG00000043884	UPF1	97	98.689	ENSTSYG00000008877	UPF1	99	98.689	Carlito_syrichta
ENSPPAG00000043884	UPF1	96	98.764	ENSCAPG00000005758	UPF1	95	98.764	Cavia_aperea
ENSPPAG00000043884	UPF1	97	97.472	ENSCPOG00000025463	UPF1	96	97.472	Cavia_porcellus
ENSPPAG00000043884	UPF1	97	99.065	ENSCCAG00000032175	UPF1	95	99.065	Cebus_capucinus
ENSPPAG00000043884	UPF1	97	98.873	ENSCATG00000040306	UPF1	98	98.873	Cercocebus_atys
ENSPPAG00000043884	UPF1	98	98.597	ENSCLAG00000004037	UPF1	100	99.620	Chinchilla_lanigera
ENSPPAG00000043884	UPF1	97	98.037	ENSCSAG00000005276	UPF1	95	98.037	Chlorocebus_sabaeus
ENSPPAG00000043884	UPF1	97	96.549	ENSCPBG00000012513	UPF1	95	96.549	Chrysemys_picta_bellii
ENSPPAG00000043884	UPF1	71	82.497	ENSCING00000021399	-	91	82.497	Ciona_intestinalis
ENSPPAG00000043884	UPF1	95	73.415	ENSCSAVG00000006533	-	94	73.415	Ciona_savignyi
ENSPPAG00000043884	UPF1	98	99.814	ENSCANG00000029819	UPF1	99	99.814	Colobus_angolensis_palliatus
ENSPPAG00000043884	UPF1	97	97.196	ENSCGRG00001021067	Upf1	95	97.196	Cricetulus_griseus_chok1gshd
ENSPPAG00000043884	UPF1	98	97.944	ENSCGRG00000013480	Upf1	99	97.944	Cricetulus_griseus_crigri
ENSPPAG00000043884	UPF1	96	93.750	ENSCSEG00000016159	-	95	93.750	Cynoglossus_semilaevis
ENSPPAG00000043884	UPF1	96	87.226	ENSCSEG00000017239	upf1	94	87.417	Cynoglossus_semilaevis
ENSPPAG00000043884	UPF1	96	93.472	ENSCVAG00000010561	upf1	95	93.472	Cyprinodon_variegatus
ENSPPAG00000043884	UPF1	96	94.017	ENSDARG00000016302	upf1	95	94.587	Danio_rerio
ENSPPAG00000043884	UPF1	99	94.664	ENSDORG00000009984	Upf1	95	96.774	Dipodomys_ordii
ENSPPAG00000043884	UPF1	81	73.631	FBgn0030354	Upf1	80	69.650	Drosophila_melanogaster
ENSPPAG00000043884	UPF1	51	87.971	ENSEBUG00000010069	upf1	89	88.727	Eptatretus_burgeri
ENSPPAG00000043884	UPF1	97	96.942	ENSEASG00005006549	UPF1	96	96.942	Equus_asinus_asinus
ENSPPAG00000043884	UPF1	97	96.942	ENSECAG00000010639	UPF1	96	96.942	Equus_caballus
ENSPPAG00000043884	UPF1	96	91.493	ENSELUG00000020917	upf1	95	91.777	Esox_lucius
ENSPPAG00000043884	UPF1	96	93.012	ENSELUG00000012916	-	95	93.019	Esox_lucius
ENSPPAG00000043884	UPF1	97	98.599	ENSFCAG00000009757	UPF1	95	98.599	Felis_catus
ENSPPAG00000043884	UPF1	99	94.886	ENSFALG00000009312	UPF1	99	94.886	Ficedula_albicollis
ENSPPAG00000043884	UPF1	96	99.525	ENSFDAG00000014816	UPF1	100	99.525	Fukomys_damarensis
ENSPPAG00000043884	UPF1	87	93.648	ENSFHEG00000016276	-	96	93.829	Fundulus_heteroclitus
ENSPPAG00000043884	UPF1	96	89.454	ENSFHEG00000006428	upf1	94	89.454	Fundulus_heteroclitus
ENSPPAG00000043884	UPF1	96	93.447	ENSGMOG00000007541	upf1	95	94.017	Gadus_morhua
ENSPPAG00000043884	UPF1	98	96.558	ENSGALG00000003220	UPF1	95	96.558	Gallus_gallus
ENSPPAG00000043884	UPF1	96	93.371	ENSGAFG00000004831	upf1	95	93.371	Gambusia_affinis
ENSPPAG00000043884	UPF1	64	93.901	ENSGAFG00000015443	-	88	91.621	Gambusia_affinis
ENSPPAG00000043884	UPF1	97	96.642	ENSGAGG00000022217	UPF1	96	96.642	Gopherus_agassizii
ENSPPAG00000043884	UPF1	96	98.955	ENSGGOG00000002608	UPF1	99	98.955	Gorilla_gorilla
ENSPPAG00000043884	UPF1	83	100.000	ENSHBUG00000008939	upf1	89	100.000	Haplochromis_burtoni
ENSPPAG00000043884	UPF1	82	86.207	ENSHBUG00000014694	upf1	90	86.207	Haplochromis_burtoni
ENSPPAG00000043884	UPF1	97	98.411	ENSHGLG00000010900	UPF1	95	98.411	Heterocephalus_glaber_female
ENSPPAG00000043884	UPF1	99	95.741	ENSHGLG00100005904	UPF1	99	95.741	Heterocephalus_glaber_male
ENSPPAG00000043884	UPF1	96	92.614	ENSHCOG00000008918	upf1	100	92.823	Hippocampus_comes
ENSPPAG00000043884	UPF1	96	94.682	ENSIPUG00000005108	UPF1	95	95.157	Ictalurus_punctatus
ENSPPAG00000043884	UPF1	97	98.327	ENSSTOG00000009196	UPF1	96	98.327	Ictidomys_tridecemlineatus
ENSPPAG00000043884	UPF1	97	97.944	ENSJJAG00000023151	Upf1	95	97.944	Jaculus_jaculus
ENSPPAG00000043884	UPF1	96	93.922	ENSKMAG00000004962	upf1	95	93.922	Kryptolebias_marmoratus
ENSPPAG00000043884	UPF1	96	90.534	ENSLBEG00000014862	upf1	95	91.846	Labrus_bergylta
ENSPPAG00000043884	UPF1	96	93.637	ENSLBEG00000027848	-	95	93.732	Labrus_bergylta
ENSPPAG00000043884	UPF1	64	97.274	ENSLACG00000008482	UPF1	100	97.274	Latimeria_chalumnae
ENSPPAG00000043884	UPF1	96	96.293	ENSLOCG00000002072	upf1	95	96.293	Lepisosteus_oculatus
ENSPPAG00000043884	UPF1	97	98.410	ENSLAFG00000014963	UPF1	95	98.410	Loxodonta_africana
ENSPPAG00000043884	UPF1	97	99.065	ENSMFAG00000037748	UPF1	95	99.065	Macaca_fascicularis
ENSPPAG00000043884	UPF1	97	99.065	ENSMMUG00000023286	UPF1	95	99.065	Macaca_mulatta
ENSPPAG00000043884	UPF1	97	99.065	ENSMNEG00000000046	UPF1	95	99.065	Macaca_nemestrina
ENSPPAG00000043884	UPF1	96	100.000	ENSMLEG00000028404	UPF1	100	100.000	Mandrillus_leucophaeus
ENSPPAG00000043884	UPF1	96	93.067	ENSMAMG00000006231	-	95	93.637	Mastacembelus_armatus
ENSPPAG00000043884	UPF1	96	90.739	ENSMAMG00000006229	upf1	95	91.862	Mastacembelus_armatus
ENSPPAG00000043884	UPF1	96	90.689	ENSMZEG00005003489	upf1	95	92.041	Maylandia_zebra
ENSPPAG00000043884	UPF1	96	93.726	ENSMZEG00005016386	-	95	93.726	Maylandia_zebra
ENSPPAG00000043884	UPF1	96	97.719	ENSMGAG00000004745	UPF1	100	97.719	Meleagris_gallopavo
ENSPPAG00000043884	UPF1	99	96.774	ENSMAUG00000011398	Upf1	97	96.774	Mesocricetus_auratus
ENSPPAG00000043884	UPF1	97	97.757	ENSMICG00000001659	UPF1	95	97.757	Microcebus_murinus
ENSPPAG00000043884	UPF1	97	97.770	ENSMOCG00000005699	Upf1	96	97.770	Microtus_ochrogaster
ENSPPAG00000043884	UPF1	96	91.985	ENSMMOG00000007881	upf1	94	92.564	Mola_mola
ENSPPAG00000043884	UPF1	96	91.548	ENSMMOG00000007537	-	99	91.643	Mola_mola
ENSPPAG00000043884	UPF1	99	96.615	ENSMODG00000003689	UPF1	95	97.818	Monodelphis_domestica
ENSPPAG00000043884	UPF1	96	92.533	ENSMALG00000018100	-	95	92.628	Monopterus_albus
ENSPPAG00000043884	UPF1	96	91.817	ENSMALG00000000144	upf1	95	92.198	Monopterus_albus
ENSPPAG00000043884	UPF1	97	98.131	MGP_CAROLIEiJ_G0031142	Upf1	95	98.131	Mus_caroli
ENSPPAG00000043884	UPF1	97	98.131	ENSMUSG00000058301	Upf1	95	98.131	Mus_musculus
ENSPPAG00000043884	UPF1	97	98.131	MGP_PahariEiJ_G0021607	Upf1	95	98.131	Mus_pahari
ENSPPAG00000043884	UPF1	97	98.131	MGP_SPRETEiJ_G0032260	Upf1	95	98.131	Mus_spretus
ENSPPAG00000043884	UPF1	97	97.666	ENSMPUG00000015516	UPF1	95	97.666	Mustela_putorius_furo
ENSPPAG00000043884	UPF1	97	97.300	ENSMLUG00000012122	UPF1	95	97.300	Myotis_lucifugus
ENSPPAG00000043884	UPF1	97	98.131	ENSNGAG00000024107	Upf1	95	98.131	Nannospalax_galili
ENSPPAG00000043884	UPF1	95	92.885	ENSNBRG00000022069	-	100	92.885	Neolamprologus_brichardi
ENSPPAG00000043884	UPF1	96	90.009	ENSNBRG00000000670	upf1	95	90.472	Neolamprologus_brichardi
ENSPPAG00000043884	UPF1	96	94.202	ENSNLEG00000006062	UPF1	100	94.202	Nomascus_leucogenys
ENSPPAG00000043884	UPF1	79	94.314	ENSMEUG00000014146	-	76	94.314	Notamacropus_eugenii
ENSPPAG00000043884	UPF1	96	90.589	ENSOPRG00000014018	UPF1	100	90.589	Ochotona_princeps
ENSPPAG00000043884	UPF1	97	98.783	ENSODEG00000012426	UPF1	96	98.783	Octodon_degus
ENSPPAG00000043884	UPF1	96	93.821	ENSONIG00000012729	-	95	93.821	Oreochromis_niloticus
ENSPPAG00000043884	UPF1	96	90.968	ENSONIG00000010452	upf1	95	92.322	Oreochromis_niloticus
ENSPPAG00000043884	UPF1	98	97.127	ENSOANG00000004568	UPF1	96	97.127	Ornithorhynchus_anatinus
ENSPPAG00000043884	UPF1	96	93.542	ENSORLG00000008453	upf1	95	93.542	Oryzias_latipes
ENSPPAG00000043884	UPF1	96	93.542	ENSORLG00020014758	upf1	95	93.542	Oryzias_latipes_hni
ENSPPAG00000043884	UPF1	96	93.542	ENSORLG00015010165	upf1	100	89.692	Oryzias_latipes_hsok
ENSPPAG00000043884	UPF1	96	93.567	ENSOMEG00000003665	upf1	95	93.567	Oryzias_melastigma
ENSPPAG00000043884	UPF1	97	97.944	ENSOGAG00000012866	UPF1	95	97.944	Otolemur_garnettii
ENSPPAG00000043884	UPF1	96	95.775	ENSOARG00000010739	UPF1	97	95.775	Ovis_aries
ENSPPAG00000043884	UPF1	97	98.599	ENSPPRG00000023470	UPF1	95	98.599	Panthera_pardus
ENSPPAG00000043884	UPF1	96	96.575	ENSPTIG00000010159	UPF1	99	96.575	Panthera_tigris_altaica
ENSPPAG00000043884	UPF1	97	99.065	ENSPTRG00000010721	UPF1	95	99.065	Pan_troglodytes
ENSPPAG00000043884	UPF1	97	99.065	ENSPANG00000008847	UPF1	95	99.065	Papio_anubis
ENSPPAG00000043884	UPF1	90	93.454	ENSPKIG00000006069	upf1	94	93.454	Paramormyrops_kingsleyae
ENSPPAG00000043884	UPF1	70	97.908	ENSPSIG00000009491	UPF1	100	97.908	Pelodiscus_sinensis
ENSPPAG00000043884	UPF1	96	90.427	ENSPMGG00000017327	upf1	95	90.634	Periophthalmus_magnuspinnatus
ENSPPAG00000043884	UPF1	97	98.224	ENSPEMG00000001085	Upf1	95	98.224	Peromyscus_maniculatus_bairdii
ENSPPAG00000043884	UPF1	97	88.224	ENSPMAG00000001206	upf1	95	88.763	Petromyzon_marinus
ENSPPAG00000043884	UPF1	97	97.012	ENSPCIG00000006156	UPF1	95	97.012	Phascolarctos_cinereus
ENSPPAG00000043884	UPF1	96	93.466	ENSPLAG00000016232	-	95	93.466	Poecilia_latipinna
ENSPPAG00000043884	UPF1	96	90.584	ENSPLAG00000018155	-	95	90.584	Poecilia_latipinna
ENSPPAG00000043884	UPF1	96	91.176	ENSPMEG00000011443	-	95	91.176	Poecilia_mexicana
ENSPPAG00000043884	UPF1	96	93.561	ENSPMEG00000016319	-	95	93.561	Poecilia_mexicana
ENSPPAG00000043884	UPF1	96	93.277	ENSPREG00000011247	-	95	93.277	Poecilia_reticulata
ENSPPAG00000043884	UPF1	96	91.149	ENSPREG00000009940	upf1	94	91.149	Poecilia_reticulata
ENSPPAG00000043884	UPF1	97	93.832	ENSPPYG00000009752	UPF1	95	93.832	Pongo_abelii
ENSPPAG00000043884	UPF1	67	100.000	ENSPCAG00000012962	UPF1	65	100.000	Procavia_capensis
ENSPPAG00000043884	UPF1	98	98.417	ENSPCOG00000023813	UPF1	96	98.417	Propithecus_coquereli
ENSPPAG00000043884	UPF1	65	100.000	ENSPVAG00000003183	UPF1	64	100.000	Pteropus_vampyrus
ENSPPAG00000043884	UPF1	96	93.726	ENSPNYG00000016731	-	95	93.726	Pundamilia_nyererei
ENSPPAG00000043884	UPF1	96	90.689	ENSPNYG00000003694	upf1	95	92.041	Pundamilia_nyererei
ENSPPAG00000043884	UPF1	96	94.207	ENSPNAG00000025614	upf1	95	94.777	Pygocentrus_nattereri
ENSPPAG00000043884	UPF1	97	98.131	ENSRNOG00000020134	Upf1	95	98.131	Rattus_norvegicus
ENSPPAG00000043884	UPF1	99	97.232	ENSRBIG00000013894	UPF1	100	97.232	Rhinopithecus_bieti
ENSPPAG00000043884	UPF1	98	99.722	ENSRROG00000040935	UPF1	99	99.722	Rhinopithecus_roxellana
ENSPPAG00000043884	UPF1	75	56.348	YMR080C	NAM7	84	56.348	Saccharomyces_cerevisiae
ENSPPAG00000043884	UPF1	98	98.146	ENSSBOG00000023632	UPF1	99	98.146	Saimiri_boliviensis_boliviensis
ENSPPAG00000043884	UPF1	96	98.860	ENSSHAG00000010499	UPF1	100	98.860	Sarcophilus_harrisii
ENSPPAG00000043884	UPF1	96	96.293	ENSSFOG00015021095	upf1	99	96.198	Scleropages_formosus
ENSPPAG00000043884	UPF1	96	93.827	ENSSMAG00000021018	-	95	93.922	Scophthalmus_maximus
ENSPPAG00000043884	UPF1	96	90.103	ENSSMAG00000005055	upf1	95	91.045	Scophthalmus_maximus
ENSPPAG00000043884	UPF1	96	90.926	ENSSDUG00000013320	upf1	95	92.049	Seriola_dumerili
ENSPPAG00000043884	UPF1	96	94.017	ENSSDUG00000009629	-	95	94.112	Seriola_dumerili
ENSPPAG00000043884	UPF1	96	91.785	ENSSLDG00000020868	upf1	95	92.366	Seriola_lalandi_dorsalis
ENSPPAG00000043884	UPF1	96	94.017	ENSSLDG00000006878	-	95	94.112	Seriola_lalandi_dorsalis
ENSPPAG00000043884	UPF1	97	96.642	ENSSPUG00000010538	UPF1	95	96.642	Sphenodon_punctatus
ENSPPAG00000043884	UPF1	96	90.057	ENSSPAG00000000003	upf1	95	90.085	Stegastes_partitus
ENSPPAG00000043884	UPF1	96	94.011	ENSSPAG00000011521	-	95	94.011	Stegastes_partitus
ENSPPAG00000043884	UPF1	99	97.516	ENSSSCG00000039301	UPF1	99	98.668	Sus_scrofa
ENSPPAG00000043884	UPF1	78	91.425	ENSTGUG00000001057	UPF1	90	96.700	Taeniopygia_guttata
ENSPPAG00000043884	UPF1	96	91.912	ENSTRUG00000000150	upf1	95	91.912	Takifugu_rubripes
ENSPPAG00000043884	UPF1	96	92.776	ENSTRUG00000005131	-	95	92.871	Takifugu_rubripes
ENSPPAG00000043884	UPF1	98	93.832	ENSTTRG00000011544	UPF1	93	94.862	Tursiops_truncatus
ENSPPAG00000043884	UPF1	97	97.572	ENSUAMG00000007093	UPF1	95	97.572	Ursus_americanus
ENSPPAG00000043884	UPF1	97	98.782	ENSUMAG00000006652	UPF1	99	98.782	Ursus_maritimus
ENSPPAG00000043884	UPF1	97	97.666	ENSVVUG00000007797	UPF1	95	97.666	Vulpes_vulpes
ENSPPAG00000043884	UPF1	96	83.602	ENSXETG00000013602	upf1	93	83.602	Xenopus_tropicalis
ENSPPAG00000043884	UPF1	93	90.837	ENSXCOG00000015275	-	91	90.837	Xiphophorus_couchianus
ENSPPAG00000043884	UPF1	95	93.858	ENSXCOG00000005764	-	100	93.858	Xiphophorus_couchianus
ENSPPAG00000043884	UPF1	96	91.065	ENSXMAG00000001703	-	95	91.065	Xiphophorus_maculatus
ENSPPAG00000043884	UPF1	96	93.371	ENSXMAG00000002540	-	95	93.371	Xiphophorus_maculatus