EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPAG00000043918 (Gene tree)
Gene ID: 100993769
Gene Symbol: SRRM1
Alias: -
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Plus strand
Length: 29433 bases
Position: chr1:24821565-24850997
Accession: 100993769
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000042740	PWI	PF01480.17	8.6e-30	1	1
ENSPPAP00000042739	PWI	PF01480.17	8.8e-30	1	1
ENSPPAP00000042734	PWI	PF01480.17	9.3e-30	1	1
ENSPPAP00000042737	PWI	PF01480.17	9.4e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000065671	SRRM1-204	2451	-	ENSPPAP00000042740	816 (aa)	-	A0A2R9CL73
ENSPPAT00000065668	SRRM1-202	2742	XM_003810780	ENSPPAP00000042737	913 (aa)	XP_003810828	A0A2R9CT10
ENSPPAT00000065669	SRRM1-203	2628	-	ENSPPAP00000042739	875 (aa)	-	A0A2R9CL90
ENSPPAT00000065665	SRRM1-201	3230	XM_003810779	ENSPPAP00000042734	904 (aa)	XP_003810827	A0A2R9CL85

Gene Model

Click here to download ENSPPAG00000043918's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps03013	RNA transport	KEGG
pps03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000043918's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000043918	SRRM1	100	99.890	ENSG00000133226	SRRM1	100	100.000	Homo_sapiens
ENSPPAG00000043918	SRRM1	100	98.248	ENSAMEG00000010075	SRRM1	100	98.248	Ailuropoda_melanoleuca
ENSPPAG00000043918	SRRM1	100	98.894	ENSANAG00000035606	SRRM1	100	98.894	Aotus_nancymaae
ENSPPAG00000043918	SRRM1	100	97.566	ENSBTAG00000013772	SRRM1	100	97.566	Bos_taurus
ENSPPAG00000043918	SRRM1	100	98.467	ENSCJAG00000020822	SRRM1	100	98.467	Callithrix_jacchus
ENSPPAG00000043918	SRRM1	96	89.373	ENSCAFG00020000003	-	98	89.447	Canis_lupus_dingo
ENSPPAG00000043918	SRRM1	100	98.119	ENSCAFG00020020948	SRRM1	100	98.119	Canis_lupus_dingo
ENSPPAG00000043918	SRRM1	100	96.397	ENSCHIG00000014656	SRRM1	100	96.397	Capra_hircus
ENSPPAG00000043918	SRRM1	100	98.248	ENSTSYG00000006782	SRRM1	100	98.248	Carlito_syrichta
ENSPPAG00000043918	SRRM1	99	94.537	ENSCAPG00000011473	SRRM1	100	94.537	Cavia_aperea
ENSPPAG00000043918	SRRM1	100	95.465	ENSCPOG00000015594	SRRM1	100	95.465	Cavia_porcellus
ENSPPAG00000043918	SRRM1	100	98.686	ENSCCAG00000029474	SRRM1	100	98.686	Cebus_capucinus
ENSPPAG00000043918	SRRM1	100	99.447	ENSCATG00000031303	SRRM1	100	99.447	Cercocebus_atys
ENSPPAG00000043918	SRRM1	100	96.460	ENSCLAG00000014592	SRRM1	100	96.460	Chinchilla_lanigera
ENSPPAG00000043918	SRRM1	76	97.500	ENSCHOG00000000027	SRRM1	73	98.873	Choloepus_hoffmanni
ENSPPAG00000043918	SRRM1	100	99.452	ENSCANG00000028271	SRRM1	100	99.452	Colobus_angolensis_palliatus
ENSPPAG00000043918	SRRM1	53	62.447	ENSCGRG00001013517	-	59	57.514	Cricetulus_griseus_chok1gshd
ENSPPAG00000043918	SRRM1	53	62.447	ENSCGRG00000007531	-	59	57.514	Cricetulus_griseus_crigri
ENSPPAG00000043918	SRRM1	100	96.514	ENSEASG00005004270	SRRM1	100	96.514	Equus_asinus_asinus
ENSPPAG00000043918	SRRM1	100	97.235	ENSECAG00000026981	SRRM1	100	97.235	Equus_caballus
ENSPPAG00000043918	SRRM1	51	100.000	ENSEEUG00000013830	SRRM1	74	90.385	Erinaceus_europaeus
ENSPPAG00000043918	SRRM1	100	98.341	ENSFCAG00000000678	-	100	98.341	Felis_catus
ENSPPAG00000043918	SRRM1	100	97.235	ENSFDAG00000009903	SRRM1	100	97.235	Fukomys_damarensis
ENSPPAG00000043918	SRRM1	100	99.781	ENSGGOG00000005209	SRRM1	100	99.781	Gorilla_gorilla
ENSPPAG00000043918	SRRM1	100	97.235	ENSHGLG00000017105	SRRM1	100	97.235	Heterocephalus_glaber_female
ENSPPAG00000043918	SRRM1	79	72.059	ENSHGLG00000013761	-	72	91.935	Heterocephalus_glaber_female
ENSPPAG00000043918	SRRM1	99	96.778	ENSHGLG00100016772	SRRM1	99	96.778	Heterocephalus_glaber_male
ENSPPAG00000043918	SRRM1	100	98.451	ENSSTOG00000014640	SRRM1	100	98.451	Ictidomys_tridecemlineatus
ENSPPAG00000043918	SRRM1	100	94.380	ENSLAFG00000013830	SRRM1	100	94.380	Loxodonta_africana
ENSPPAG00000043918	SRRM1	100	99.558	ENSMFAG00000025726	SRRM1	100	99.558	Macaca_fascicularis
ENSPPAG00000043918	SRRM1	86	79.815	ENSMFAG00000038841	-	61	80.885	Macaca_fascicularis
ENSPPAG00000043918	SRRM1	55	80.282	ENSMMUG00000039269	-	59	77.096	Macaca_mulatta
ENSPPAG00000043918	SRRM1	100	99.447	ENSMMUG00000006645	SRRM1	100	99.447	Macaca_mulatta
ENSPPAG00000043918	SRRM1	100	99.558	ENSMNEG00000039415	SRRM1	100	99.558	Macaca_nemestrina
ENSPPAG00000043918	SRRM1	59	71.082	ENSMLEG00000032221	-	61	73.764	Mandrillus_leucophaeus
ENSPPAG00000043918	SRRM1	61	98.603	ENSMLEG00000038030	-	100	93.750	Mandrillus_leucophaeus
ENSPPAG00000043918	SRRM1	100	98.341	ENSMICG00000006553	SRRM1	100	98.341	Microcebus_murinus
ENSPPAG00000043918	SRRM1	96	94.994	ENSMLUG00000006246	SRRM1	87	94.994	Myotis_lucifugus
ENSPPAG00000043918	SRRM1	100	99.890	ENSNLEG00000008966	SRRM1	100	99.890	Nomascus_leucogenys
ENSPPAG00000043918	SRRM1	55	89.815	ENSMEUG00000014704	SRRM1	57	83.333	Notamacropus_eugenii
ENSPPAG00000043918	SRRM1	100	97.052	ENSOCUG00000008438	SRRM1	100	97.052	Oryctolagus_cuniculus
ENSPPAG00000043918	SRRM1	100	96.841	ENSOGAG00000010210	SRRM1	100	96.841	Otolemur_garnettii
ENSPPAG00000043918	SRRM1	92	97.288	ENSOARG00000006453	SRRM1	99	97.288	Ovis_aries
ENSPPAG00000043918	SRRM1	100	98.341	ENSPPRG00000002509	SRRM1	100	98.341	Panthera_pardus
ENSPPAG00000043918	SRRM1	100	92.384	ENSPTIG00000008778	-	100	92.384	Panthera_tigris_altaica
ENSPPAG00000043918	SRRM1	100	99.889	ENSPTRG00000000349	SRRM1	100	99.889	Pan_troglodytes
ENSPPAG00000043918	SRRM1	100	99.387	ENSPANG00000010194	SRRM1	100	99.387	Papio_anubis
ENSPPAG00000043918	SRRM1	55	79.637	ENSPANG00000035568	-	59	78.629	Papio_anubis
ENSPPAG00000043918	SRRM1	100	99.562	ENSPPYG00000001716	SRRM1	100	99.562	Pongo_abelii
ENSPPAG00000043918	SRRM1	52	100.000	ENSPCAG00000015138	SRRM1	52	100.000	Procavia_capensis
ENSPPAG00000043918	SRRM1	100	98.359	ENSPCOG00000021311	SRRM1	100	98.359	Propithecus_coquereli
ENSPPAG00000043918	SRRM1	100	98.028	ENSPVAG00000005836	SRRM1	100	98.028	Pteropus_vampyrus
ENSPPAG00000043918	SRRM1	99	92.873	ENSRBIG00000035461	SRRM1	99	92.873	Rhinopithecus_bieti
ENSPPAG00000043918	SRRM1	100	99.562	ENSRROG00000035151	SRRM1	100	99.562	Rhinopithecus_roxellana
ENSPPAG00000043918	SRRM1	100	97.590	ENSSBOG00000019884	SRRM1	99	100.000	Saimiri_boliviensis_boliviensis
ENSPPAG00000043918	SRRM1	63	94.426	ENSSARG00000013718	SRRM1	60	94.426	Sorex_araneus
ENSPPAG00000043918	SRRM1	67	88.129	ENSSPUG00000015890	SRRM1	57	82.841	Sphenodon_punctatus
ENSPPAG00000043918	SRRM1	99	97.366	ENSSSCG00000032947	SRRM1	100	97.808	Sus_scrofa
ENSPPAG00000043918	SRRM1	100	97.590	ENSTBEG00000000100	SRRM1	100	97.590	Tupaia_belangeri
ENSPPAG00000043918	SRRM1	99	97.241	ENSTTRG00000009365	SRRM1	100	97.241	Tursiops_truncatus
ENSPPAG00000043918	SRRM1	88	98.872	ENSUMAG00000013121	SRRM1	95	98.872	Ursus_maritimus
ENSPPAG00000043918	SRRM1	96	93.651	ENSVPAG00000007698	SRRM1	100	93.651	Vicugna_pacos
ENSPPAG00000043918	SRRM1	96	98.597	ENSVVUG00000026966	SRRM1	97	95.531	Vulpes_vulpes