EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPAG00000044045 (Gene tree)
Gene ID: 100977348
Gene Symbol: -
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Pan_paniscus
Status: putative
Strand: Minus strand
Length: 16423 bases
Position: chr19:18757390-18773812
Accession: 100977348
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPAP00000043002	LSM	PF01423.22	1.3e-16	1	1
ENSPPAP00000043006	LSM	PF01423.22	4e-16	1	1
ENSPPAP00000043005	LSM	PF01423.22	1.2e-13	1	1
ENSPPAP00000043004	LSM	PF01423.22	1.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPAT00000065937	-	378	-	ENSPPAP00000043004	125 (aa)	-	A0A2R9CM11
ENSPPAT00000065935	-	1155	XM_003817776	ENSPPAP00000043002	139 (aa)	XP_003817824	A0A2R9CTE0
ENSPPAT00000065938	-	366	-	ENSPPAP00000043005	121 (aa)	-	A0A2R9CLZ3
ENSPPAT00000065939	-	715	-	ENSPPAP00000043006	238 (aa)	-	A0A2R9CM24

Gene Model

Click here to download ENSPPAG00000044045's gene model file

Pathways

Pathway ID	Pathway Name	Source
pps03018	RNA degradation	KEGG
pps03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPAG00000044045's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPAG00000044045	-	70	32.000	ENSPPAG00000032431	LSM2	82	35.000
ENSPPAG00000044045	-	52	34.722	ENSPPAG00000039191	SNRPD3	56	34.722

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPAG00000044045	-	100	100.000	ENSG00000130520	LSM4	100	100.000	Homo_sapiens
ENSPPAG00000044045	-	99	73.510	ENSAPOG00000005643	lsm4	58	98.864	Acanthochromis_polyacanthus
ENSPPAG00000044045	-	100	100.000	ENSAMEG00000011162	LSM4	95	100.000	Ailuropoda_melanoleuca
ENSPPAG00000044045	-	99	77.622	ENSAOCG00000006414	lsm4	59	98.864	Amphiprion_ocellaris
ENSPPAG00000044045	-	99	75.000	ENSAPEG00000006238	lsm4	59	98.864	Amphiprion_percula
ENSPPAG00000044045	-	71	96.970	ENSATEG00000016559	lsm4	58	98.864	Anabas_testudineus
ENSPPAG00000044045	-	100	100.000	ENSANAG00000034659	LSM4	100	100.000	Aotus_nancymaae
ENSPPAG00000044045	-	98	78.295	ENSACLG00000022738	lsm4	60	98.864	Astatotilapia_calliptera
ENSPPAG00000044045	-	99	84.058	ENSAMXG00000016932	lsm4	62	97.727	Astyanax_mexicanus
ENSPPAG00000044045	-	100	100.000	ENSBTAG00000008578	LSM4	100	100.000	Bos_taurus
ENSPPAG00000044045	-	60	75.904	WBGene00003078	lsm-4	67	75.904	Caenorhabditis_elegans
ENSPPAG00000044045	-	100	100.000	ENSCJAG00000014171	LSM4	100	100.000	Callithrix_jacchus
ENSPPAG00000044045	-	99	100.000	ENSCAFG00000014900	LSM4	90	100.000	Canis_familiaris
ENSPPAG00000044045	-	100	100.000	ENSCAFG00020012137	LSM4	100	100.000	Canis_lupus_dingo
ENSPPAG00000044045	-	100	100.000	ENSCHIG00000010928	LSM4	91	100.000	Capra_hircus
ENSPPAG00000044045	-	100	99.281	ENSTSYG00000030906	LSM4	100	99.281	Carlito_syrichta
ENSPPAG00000044045	-	100	97.842	ENSCAPG00000014140	LSM4	100	97.842	Cavia_aperea
ENSPPAG00000044045	-	100	97.842	ENSCPOG00000024117	LSM4	100	97.842	Cavia_porcellus
ENSPPAG00000044045	-	100	100.000	ENSCCAG00000036308	LSM4	100	100.000	Cebus_capucinus
ENSPPAG00000044045	-	100	100.000	ENSCATG00000029311	LSM4	100	100.000	Cercocebus_atys
ENSPPAG00000044045	-	100	96.403	ENSCLAG00000010828	LSM4	100	96.403	Chinchilla_lanigera
ENSPPAG00000044045	-	100	100.000	ENSCSAG00000005370	LSM4	100	100.000	Chlorocebus_sabaeus
ENSPPAG00000044045	-	100	82.014	ENSCPBG00000012925	LSM4	100	89.928	Chrysemys_picta_bellii
ENSPPAG00000044045	-	62	91.860	ENSCING00000007519	-	69	92.045	Ciona_intestinalis
ENSPPAG00000044045	-	62	93.023	ENSCSAVG00000008596	-	70	93.182	Ciona_savignyi
ENSPPAG00000044045	-	100	100.000	ENSCANG00000043686	LSM4	100	100.000	Colobus_angolensis_palliatus
ENSPPAG00000044045	-	100	95.683	ENSCGRG00001014436	Lsm4	100	95.683	Cricetulus_griseus_chok1gshd
ENSPPAG00000044045	-	100	95.200	ENSCGRG00000009398	Lsm4	100	95.652	Cricetulus_griseus_crigri
ENSPPAG00000044045	-	70	95.876	ENSCSEG00000016127	lsm4	62	97.727	Cynoglossus_semilaevis
ENSPPAG00000044045	-	99	77.536	ENSCVAG00000010601	lsm4	62	97.727	Cyprinodon_variegatus
ENSPPAG00000044045	-	98	76.423	ENSCVAG00000021828	lsm4	56	97.260	Cyprinodon_variegatus
ENSPPAG00000044045	-	97	78.723	ENSDARG00000023852	lsm4	62	98.864	Danio_rerio
ENSPPAG00000044045	-	100	97.842	ENSDORG00000024225	Lsm4	100	97.842	Dipodomys_ordii
ENSPPAG00000044045	-	70	81.443	FBgn0032240	CG17768	57	88.636	Drosophila_melanogaster
ENSPPAG00000044045	-	99	98.387	ENSETEG00000007762	-	100	98.387	Echinops_telfairi
ENSPPAG00000044045	-	54	93.333	ENSEBUG00000003639	-	50	93.333	Eptatretus_burgeri
ENSPPAG00000044045	-	100	100.000	ENSECAG00000010141	LSM4	57	100.000	Equus_caballus
ENSPPAG00000044045	-	95	84.328	ENSELUG00000012821	lsm4	66	98.851	Esox_lucius
ENSPPAG00000044045	-	100	100.000	ENSFCAG00000040580	LSM4	100	100.000	Felis_catus
ENSPPAG00000044045	-	99	81.159	ENSFALG00000009478	LSM4	99	89.855	Ficedula_albicollis
ENSPPAG00000044045	-	100	96.800	ENSFDAG00000010124	LSM4	100	97.101	Fukomys_damarensis
ENSPPAG00000044045	-	98	72.932	ENSGMOG00000007729	lsm4	59	98.851	Gadus_morhua
ENSPPAG00000044045	-	100	81.295	ENSGALG00000003385	LSM4	100	89.928	Gallus_gallus
ENSPPAG00000044045	-	98	79.200	ENSGAFG00000004903	lsm4	55	94.521	Gambusia_affinis
ENSPPAG00000044045	-	68	97.895	ENSGACG00000008140	lsm4	59	98.864	Gasterosteus_aculeatus
ENSPPAG00000044045	-	100	82.014	ENSGAGG00000017812	LSM4	100	89.928	Gopherus_agassizii
ENSPPAG00000044045	-	100	100.000	ENSGGOG00000012914	-	100	100.000	Gorilla_gorilla
ENSPPAG00000044045	-	100	97.122	ENSHGLG00000006568	LSM4	100	97.122	Heterocephalus_glaber_female
ENSPPAG00000044045	-	67	100.000	ENSHGLG00100007894	LSM4	100	100.000	Heterocephalus_glaber_male
ENSPPAG00000044045	-	99	77.372	ENSHCOG00000008819	lsm4	62	98.864	Hippocampus_comes
ENSPPAG00000044045	-	99	84.058	ENSIPUG00000005368	Lsm4	62	98.864	Ictalurus_punctatus
ENSPPAG00000044045	-	100	100.000	ENSSTOG00000016494	LSM4	100	100.000	Ictidomys_tridecemlineatus
ENSPPAG00000044045	-	100	97.122	ENSJJAG00000017420	Lsm4	100	97.122	Jaculus_jaculus
ENSPPAG00000044045	-	62	97.674	ENSKMAG00000005073	lsm4	61	97.727	Kryptolebias_marmoratus
ENSPPAG00000044045	-	71	96.970	ENSLBEG00000027930	lsm4	73	94.545	Labrus_bergylta
ENSPPAG00000044045	-	99	83.212	ENSLACG00000015861	LSM4	98	83.212	Latimeria_chalumnae
ENSPPAG00000044045	-	93	83.721	ENSLOCG00000002025	lsm4	62	97.727	Lepisosteus_oculatus
ENSPPAG00000044045	-	100	98.400	ENSLAFG00000017459	LSM4	99	98.551	Loxodonta_africana
ENSPPAG00000044045	-	100	100.000	ENSMFAG00000031194	LSM4	100	100.000	Macaca_fascicularis
ENSPPAG00000044045	-	100	100.000	ENSMMUG00000004405	LSM4	100	100.000	Macaca_mulatta
ENSPPAG00000044045	-	100	100.000	ENSMNEG00000042899	LSM4	100	100.000	Macaca_nemestrina
ENSPPAG00000044045	-	100	100.000	ENSMLEG00000027948	LSM4	100	100.000	Mandrillus_leucophaeus
ENSPPAG00000044045	-	99	79.710	ENSMAMG00000006190	lsm4	77	94.545	Mastacembelus_armatus
ENSPPAG00000044045	-	98	78.906	ENSMZEG00005016420	lsm4	60	98.864	Maylandia_zebra
ENSPPAG00000044045	-	99	82.734	ENSMGAG00000004976	LSM4	99	89.855	Meleagris_gallopavo
ENSPPAG00000044045	-	100	99.281	ENSMICG00000000222	LSM4	100	99.281	Microcebus_murinus
ENSPPAG00000044045	-	100	96.403	ENSMOCG00000020861	Lsm4	100	96.403	Microtus_ochrogaster
ENSPPAG00000044045	-	99	95.968	ENSMODG00000015044	-	100	95.968	Monodelphis_domestica
ENSPPAG00000044045	-	99	77.143	ENSMALG00000018159	lsm4	62	97.727	Monopterus_albus
ENSPPAG00000044045	-	100	96.403	MGP_CAROLIEiJ_G0031158	Lsm4	100	96.403	Mus_caroli
ENSPPAG00000044045	-	100	96.403	ENSMUSG00000031848	Lsm4	100	96.403	Mus_musculus
ENSPPAG00000044045	-	100	96.403	MGP_PahariEiJ_G0021623	Lsm4	100	96.403	Mus_pahari
ENSPPAG00000044045	-	100	96.403	MGP_SPRETEiJ_G0032276	Lsm4	100	96.403	Mus_spretus
ENSPPAG00000044045	-	100	100.000	ENSMPUG00000015589	LSM4	100	100.000	Mustela_putorius_furo
ENSPPAG00000044045	-	100	100.000	ENSMLUG00000004010	LSM4	99	100.000	Myotis_lucifugus
ENSPPAG00000044045	-	100	96.403	ENSNGAG00000008644	Lsm4	100	96.403	Nannospalax_galili
ENSPPAG00000044045	-	71	96.939	ENSNBRG00000022150	lsm4	54	98.851	Neolamprologus_brichardi
ENSPPAG00000044045	-	99	92.742	ENSMEUG00000013229	LSM4	100	92.742	Notamacropus_eugenii
ENSPPAG00000044045	-	99	96.667	ENSOPRG00000005575	LSM4	100	87.500	Ochotona_princeps
ENSPPAG00000044045	-	100	97.122	ENSODEG00000020549	-	100	97.122	Octodon_degus
ENSPPAG00000044045	-	100	87.050	ENSODEG00000004519	-	100	74.820	Octodon_degus
ENSPPAG00000044045	-	100	73.381	ENSODEG00000011712	-	100	73.381	Octodon_degus
ENSPPAG00000044045	-	98	78.295	ENSONIG00000012724	lsm4	60	98.864	Oreochromis_niloticus
ENSPPAG00000044045	-	60	98.630	ENSOANG00000007434	LSM4	78	93.407	Ornithorhynchus_anatinus
ENSPPAG00000044045	-	99	85.106	ENSORLG00000008391	lsm4	61	97.727	Oryzias_latipes
ENSPPAG00000044045	-	98	80.159	ENSORLG00020014829	lsm4	61	97.727	Oryzias_latipes_hni
ENSPPAG00000044045	-	99	85.106	ENSORLG00015010205	lsm4	61	97.727	Oryzias_latipes_hsok
ENSPPAG00000044045	-	100	83.453	ENSOMEG00000003606	lsm4	61	97.727	Oryzias_melastigma
ENSPPAG00000044045	-	71	98.990	ENSOGAG00000027992	LSM4	60	100.000	Otolemur_garnettii
ENSPPAG00000044045	-	95	100.000	ENSOARG00000012553	LSM4	94	100.000	Ovis_aries
ENSPPAG00000044045	-	100	100.000	ENSPPRG00000018264	LSM4	100	100.000	Panthera_pardus
ENSPPAG00000044045	-	100	100.000	ENSPTIG00000006306	LSM4	100	100.000	Panthera_tigris_altaica
ENSPPAG00000044045	-	100	100.000	ENSPTRG00000031470	LSM4	100	100.000	Pan_troglodytes
ENSPPAG00000044045	-	100	100.000	ENSPANG00000014399	LSM4	100	100.000	Papio_anubis
ENSPPAG00000044045	-	99	81.752	ENSPKIG00000006154	lsm4	62	98.864	Paramormyrops_kingsleyae
ENSPPAG00000044045	-	99	81.159	ENSPSIG00000012358	LSM4	100	89.855	Pelodiscus_sinensis
ENSPPAG00000044045	-	100	96.403	ENSPEMG00000001358	Lsm4	100	96.403	Peromyscus_maniculatus_bairdii
ENSPPAG00000044045	-	98	80.000	ENSPFOG00000000570	lsm4	63	81.513	Poecilia_formosa
ENSPPAG00000044045	-	99	76.389	ENSPLAG00000016267	lsm4	83	81.513	Poecilia_latipinna
ENSPPAG00000044045	-	98	80.000	ENSPMEG00000016378	lsm4	83	81.513	Poecilia_mexicana
ENSPPAG00000044045	-	100	100.000	ENSPPYG00000009736	LSM4	100	100.000	Pongo_abelii
ENSPPAG00000044045	-	99	98.387	ENSPCAG00000008513	LSM4	100	98.387	Procavia_capensis
ENSPPAG00000044045	-	100	99.281	ENSPCOG00000019837	LSM4	100	99.281	Propithecus_coquereli
ENSPPAG00000044045	-	100	100.000	ENSPVAG00000015383	LSM4	100	100.000	Pteropus_vampyrus
ENSPPAG00000044045	-	98	78.906	ENSPNYG00000016794	lsm4	60	98.864	Pundamilia_nyererei
ENSPPAG00000044045	-	96	83.582	ENSPNAG00000016598	lsm4	65	98.851	Pygocentrus_nattereri
ENSPPAG00000044045	-	100	96.403	ENSRNOG00000019572	Lsm4	100	96.403	Rattus_norvegicus
ENSPPAG00000044045	-	100	100.000	ENSRBIG00000024717	LSM4	100	100.000	Rhinopithecus_bieti
ENSPPAG00000044045	-	100	100.000	ENSRROG00000045706	LSM4	100	100.000	Rhinopithecus_roxellana
ENSPPAG00000044045	-	60	40.860	YER112W	LSM4	50	41.935	Saccharomyces_cerevisiae
ENSPPAG00000044045	-	100	100.000	ENSSBOG00000022455	LSM4	100	100.000	Saimiri_boliviensis_boliviensis
ENSPPAG00000044045	-	100	96.403	ENSSHAG00000011559	LSM4	100	96.403	Sarcophilus_harrisii
ENSPPAG00000044045	-	99	80.292	ENSSFOG00015021067	lsm4	98	76.087	Scleropages_formosus
ENSPPAG00000044045	-	99	71.831	ENSSMAG00000021020	lsm4	95	72.535	Scophthalmus_maximus
ENSPPAG00000044045	-	71	96.970	ENSSDUG00000009588	lsm4	53	98.864	Seriola_dumerili
ENSPPAG00000044045	-	71	96.970	ENSSLDG00000006827	lsm4	52	98.864	Seriola_lalandi_dorsalis
ENSPPAG00000044045	-	63	98.851	ENSSPUG00000010166	LSM4	56	98.851	Sphenodon_punctatus
ENSPPAG00000044045	-	99	73.510	ENSSPAG00000011615	lsm4	58	98.864	Stegastes_partitus
ENSPPAG00000044045	-	100	100.000	ENSSSCG00000034314	LSM4	100	100.000	Sus_scrofa
ENSPPAG00000044045	-	98	78.400	ENSTRUG00000021737	lsm4	62	96.591	Takifugu_rubripes
ENSPPAG00000044045	-	99	80.714	ENSTNIG00000010191	lsm4	61	97.727	Tetraodon_nigroviridis
ENSPPAG00000044045	-	100	100.000	ENSUAMG00000000665	LSM4	99	100.000	Ursus_americanus
ENSPPAG00000044045	-	100	100.000	ENSUMAG00000009013	LSM4	100	100.000	Ursus_maritimus
ENSPPAG00000044045	-	100	100.000	ENSVVUG00000008136	LSM4	71	100.000	Vulpes_vulpes
ENSPPAG00000044045	-	100	91.367	ENSXETG00000024933	lsm4	100	89.209	Xenopus_tropicalis
ENSPPAG00000044045	-	98	79.200	ENSXMAG00000026672	lsm4	63	80.672	Xiphophorus_maculatus