EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPRG00000002626 (Gene tree)
Gene ID: 109270264
Gene Symbol: R3HDM1
Alias: -
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Panthera_pardus
Status: putative
Strand: Plus strand
Length: 154088 bases
Position: chrKV860273.1:4410453-4564540
Accession: 109270264
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPRP00000007429	R3H	PF01424.22	1.7e-11	1	1
ENSPPRP00000007406	R3H	PF01424.22	1.9e-11	1	1
ENSPPRP00000007436	R3H	PF01424.22	2e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPRT00000005185	R3HDM1-201	3132	XM_019454764	ENSPPRP00000007406	1043 (aa)	XP_019310309	-
ENSPPRT00000005215	R3HDM1-203	4740	XM_019454667	ENSPPRP00000007436	1099 (aa)	XP_019310212	UPI000904A55A
ENSPPRT00000005211	R3HDM1-202	4352	XM_019454721	ENSPPRP00000007429	970 (aa)	XP_019310266	UPI000905CEA6

Gene Model

Click here to download ENSPPRG00000002626's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPRG00000002626's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPRG00000002626	R3HDM1	99	48.943	ENSPPRG00000009240	R3HDM2	100	47.589
ENSPPRG00000002626	R3HDM1	67	51.751	ENSPPRG00000006681	ARPP21	88	52.156

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPRG00000002626	R3HDM1	100	94.661	ENSG00000048991	R3HDM1	100	94.559	Homo_sapiens
ENSPPRG00000002626	R3HDM1	88	62.933	ENSAPOG00000020850	r3hdm1	92	62.933	Acanthochromis_polyacanthus
ENSPPRG00000002626	R3HDM1	100	98.187	ENSAMEG00000014886	R3HDM1	100	98.187	Ailuropoda_melanoleuca
ENSPPRG00000002626	R3HDM1	87	57.598	ENSAOCG00000005192	r3hdm1	95	57.598	Amphiprion_ocellaris
ENSPPRG00000002626	R3HDM1	87	62.667	ENSAPEG00000016108	r3hdm1	95	62.667	Amphiprion_percula
ENSPPRG00000002626	R3HDM1	87	62.903	ENSATEG00000000232	r3hdm1	99	45.975	Anabas_testudineus
ENSPPRG00000002626	R3HDM1	100	79.620	ENSAPLG00000015231	R3HDM1	100	79.710	Anas_platyrhynchos
ENSPPRG00000002626	R3HDM1	100	77.018	ENSACAG00000001676	R3HDM1	100	77.719	Anolis_carolinensis
ENSPPRG00000002626	R3HDM1	100	95.018	ENSANAG00000035334	R3HDM1	100	94.928	Aotus_nancymaae
ENSPPRG00000002626	R3HDM1	87	61.942	ENSACLG00000027282	r3hdm1	94	61.942	Astatotilapia_calliptera
ENSPPRG00000002626	R3HDM1	60	40.435	ENSAMXG00000020587	arpp21	85	40.301	Astyanax_mexicanus
ENSPPRG00000002626	R3HDM1	88	74.367	ENSAMXG00000003536	r3hdm1	100	55.517	Astyanax_mexicanus
ENSPPRG00000002626	R3HDM1	88	79.430	ENSAMXG00000012861	R3HDM1	100	60.984	Astyanax_mexicanus
ENSPPRG00000002626	R3HDM1	100	94.754	ENSBTAG00000013302	R3HDM1	100	93.116	Bos_taurus
ENSPPRG00000002626	R3HDM1	100	94.918	ENSCJAG00000011718	R3HDM1	100	94.918	Callithrix_jacchus
ENSPPRG00000002626	R3HDM1	100	98.459	ENSCAFG00000005075	R3HDM1	100	98.459	Canis_familiaris
ENSPPRG00000002626	R3HDM1	100	98.368	ENSCAFG00020016119	R3HDM1	100	98.368	Canis_lupus_dingo
ENSPPRG00000002626	R3HDM1	100	95.905	ENSCHIG00000020851	R3HDM1	100	95.814	Capra_hircus
ENSPPRG00000002626	R3HDM1	100	89.279	ENSCPOG00000012784	R3HDM1	100	93.882	Cavia_porcellus
ENSPPRG00000002626	R3HDM1	100	94.747	ENSCCAG00000027199	R3HDM1	100	94.651	Cebus_capucinus
ENSPPRG00000002626	R3HDM1	100	94.288	ENSCATG00000023642	R3HDM1	100	94.148	Cercocebus_atys
ENSPPRG00000002626	R3HDM1	100	89.358	ENSCLAG00000007962	R3HDM1	100	95.062	Chinchilla_lanigera
ENSPPRG00000002626	R3HDM1	100	90.447	ENSCSAG00000016356	R3HDM1	100	91.205	Chlorocebus_sabaeus
ENSPPRG00000002626	R3HDM1	80	93.939	ENSCHOG00000013638	R3HDM1	91	84.615	Choloepus_hoffmanni
ENSPPRG00000002626	R3HDM1	91	90.775	ENSCPBG00000009645	R3HDM1	100	90.775	Chrysemys_picta_bellii
ENSPPRG00000002626	R3HDM1	100	94.112	ENSCANG00000034748	R3HDM1	100	93.949	Colobus_angolensis_palliatus
ENSPPRG00000002626	R3HDM1	99	89.056	ENSCGRG00001012357	R3hdm1	97	89.056	Cricetulus_griseus_chok1gshd
ENSPPRG00000002626	R3HDM1	99	91.727	ENSCGRG00000012080	R3hdm1	100	94.239	Cricetulus_griseus_crigri
ENSPPRG00000002626	R3HDM1	89	43.089	ENSCSEG00000008944	r3hdm1	82	64.590	Cynoglossus_semilaevis
ENSPPRG00000002626	R3HDM1	87	60.533	ENSCVAG00000007582	r3hdm1	91	60.533	Cyprinodon_variegatus
ENSPPRG00000002626	R3HDM1	100	93.607	ENSDNOG00000000771	R3HDM1	100	92.043	Dasypus_novemcinctus
ENSPPRG00000002626	R3HDM1	100	83.545	ENSETEG00000013606	R3HDM1	100	84.000	Echinops_telfairi
ENSPPRG00000002626	R3HDM1	54	52.698	ENSEBUG00000014746	arpp21	97	43.682	Eptatretus_burgeri
ENSPPRG00000002626	R3HDM1	100	98.895	ENSEASG00005007392	R3HDM1	100	97.270	Equus_asinus_asinus
ENSPPRG00000002626	R3HDM1	99	98.895	ENSECAG00000019114	R3HDM1	100	97.184	Equus_caballus
ENSPPRG00000002626	R3HDM1	91	88.007	ENSEEUG00000012589	R3HDM1	91	87.638	Erinaceus_europaeus
ENSPPRG00000002626	R3HDM1	92	74.913	ENSELUG00000004909	R3HDM1	99	55.524	Esox_lucius
ENSPPRG00000002626	R3HDM1	92	52.249	ENSELUG00000014413	r3hdm1	87	77.617	Esox_lucius
ENSPPRG00000002626	R3HDM1	100	99.727	ENSFCAG00000027113	R3HDM1	100	99.727	Felis_catus
ENSPPRG00000002626	R3HDM1	74	72.632	ENSFALG00000013731	R3HDM1	93	60.407	Ficedula_albicollis
ENSPPRG00000002626	R3HDM1	100	89.104	ENSFDAG00000016478	R3HDM1	100	95.473	Fukomys_damarensis
ENSPPRG00000002626	R3HDM1	87	56.618	ENSFHEG00000018713	r3hdm1	91	61.333	Fundulus_heteroclitus
ENSPPRG00000002626	R3HDM1	61	64.565	ENSGMOG00000006042	-	74	64.783	Gadus_morhua
ENSPPRG00000002626	R3HDM1	94	78.672	ENSGALG00000012246	R3HDM1	99	85.902	Gallus_gallus
ENSPPRG00000002626	R3HDM1	87	61.600	ENSGAFG00000006203	r3hdm1	95	61.600	Gambusia_affinis
ENSPPRG00000002626	R3HDM1	86	67.949	ENSGACG00000014925	r3hdm1	92	67.949	Gasterosteus_aculeatus
ENSPPRG00000002626	R3HDM1	99	83.099	ENSGAGG00000007840	R3HDM1	100	78.150	Gopherus_agassizii
ENSPPRG00000002626	R3HDM1	100	94.288	ENSGGOG00000008156	R3HDM1	100	94.148	Gorilla_gorilla
ENSPPRG00000002626	R3HDM1	100	89.418	ENSHGLG00000015718	R3HDM1	100	94.856	Heterocephalus_glaber_female
ENSPPRG00000002626	R3HDM1	100	69.301	ENSHGLG00100015374	-	100	69.482	Heterocephalus_glaber_male
ENSPPRG00000002626	R3HDM1	100	89.594	ENSHGLG00100003184	-	100	94.856	Heterocephalus_glaber_male
ENSPPRG00000002626	R3HDM1	87	59.299	ENSHCOG00000013366	r3hdm1	91	60.108	Hippocampus_comes
ENSPPRG00000002626	R3HDM1	89	68.615	ENSIPUG00000013629	r3hdm1	94	70.288	Ictalurus_punctatus
ENSPPRG00000002626	R3HDM1	87	68.901	ENSIPUG00000001676	R3HDM1	99	66.507	Ictalurus_punctatus
ENSPPRG00000002626	R3HDM1	100	94.651	ENSSTOG00000007572	R3HDM1	100	96.502	Ictidomys_tridecemlineatus
ENSPPRG00000002626	R3HDM1	94	85.484	ENSLACG00000005334	R3HDM1	100	71.520	Latimeria_chalumnae
ENSPPRG00000002626	R3HDM1	100	69.492	ENSLOCG00000001641	r3hdm1	100	66.310	Lepisosteus_oculatus
ENSPPRG00000002626	R3HDM1	100	92.423	ENSLAFG00000009065	R3HDM1	100	92.335	Loxodonta_africana
ENSPPRG00000002626	R3HDM1	100	94.470	ENSMFAG00000030331	R3HDM1	100	97.291	Macaca_fascicularis
ENSPPRG00000002626	R3HDM1	100	94.353	ENSMMUG00000009844	R3HDM1	100	94.251	Macaca_mulatta
ENSPPRG00000002626	R3HDM1	100	94.288	ENSMNEG00000027793	R3HDM1	100	97.291	Macaca_nemestrina
ENSPPRG00000002626	R3HDM1	100	94.560	ENSMLEG00000043189	R3HDM1	100	94.456	Mandrillus_leucophaeus
ENSPPRG00000002626	R3HDM1	87	61.930	ENSMAMG00000004532	r3hdm1	91	57.143	Mastacembelus_armatus
ENSPPRG00000002626	R3HDM1	87	61.942	ENSMZEG00005003157	r3hdm1	95	57.005	Maylandia_zebra
ENSPPRG00000002626	R3HDM1	100	79.148	ENSMGAG00000012461	R3HDM1	100	79.057	Meleagris_gallopavo
ENSPPRG00000002626	R3HDM1	100	88.684	ENSMAUG00000010315	R3hdm1	100	93.621	Mesocricetus_auratus
ENSPPRG00000002626	R3HDM1	100	93.756	ENSMICG00000005900	-	100	93.665	Microcebus_murinus
ENSPPRG00000002626	R3HDM1	95	92.216	ENSMICG00000042655	-	100	92.216	Microcebus_murinus
ENSPPRG00000002626	R3HDM1	90	78.646	ENSMODG00000000923	R3HDM1	97	78.551	Monodelphis_domestica
ENSPPRG00000002626	R3HDM1	99	57.568	ENSMALG00000009000	r3hdm1	91	57.568	Monopterus_albus
ENSPPRG00000002626	R3HDM1	100	88.458	MGP_CAROLIEiJ_G0014543	R3hdm1	100	94.561	Mus_caroli
ENSPPRG00000002626	R3HDM1	100	88.546	ENSMUSG00000056211	R3hdm1	100	94.561	Mus_musculus
ENSPPRG00000002626	R3HDM1	100	88.370	MGP_PahariEiJ_G0027779	R3hdm1	100	94.561	Mus_pahari
ENSPPRG00000002626	R3HDM1	100	88.722	MGP_SPRETEiJ_G0015350	R3hdm1	100	94.561	Mus_spretus
ENSPPRG00000002626	R3HDM1	100	98.183	ENSMPUG00000002412	R3HDM1	100	98.183	Mustela_putorius_furo
ENSPPRG00000002626	R3HDM1	100	95.118	ENSMLUG00000013824	R3HDM1	100	94.937	Myotis_lucifugus
ENSPPRG00000002626	R3HDM1	100	94.379	ENSNLEG00000008622	R3HDM1	100	94.251	Nomascus_leucogenys
ENSPPRG00000002626	R3HDM1	89	73.620	ENSMEUG00000011784	R3HDM1	99	73.517	Notamacropus_eugenii
ENSPPRG00000002626	R3HDM1	100	88.380	ENSODEG00000008607	R3HDM1	100	95.267	Octodon_degus
ENSPPRG00000002626	R3HDM1	94	65.635	ENSONIG00000012017	r3hdm1	91	65.635	Oreochromis_niloticus
ENSPPRG00000002626	R3HDM1	100	82.353	ENSOANG00000007987	R3HDM1	100	82.172	Ornithorhynchus_anatinus
ENSPPRG00000002626	R3HDM1	89	93.890	ENSOCUG00000017366	R3HDM1	98	93.686	Oryctolagus_cuniculus
ENSPPRG00000002626	R3HDM1	87	60.372	ENSORLG00000004297	r3hdm1	90	60.372	Oryzias_latipes
ENSPPRG00000002626	R3HDM1	89	60.800	ENSORLG00015017355	r3hdm1	91	60.800	Oryzias_latipes_hsok
ENSPPRG00000002626	R3HDM1	100	94.091	ENSOGAG00000003136	R3HDM1	100	94.091	Otolemur_garnettii
ENSPPRG00000002626	R3HDM1	100	95.632	ENSOARG00000010788	R3HDM1	100	95.541	Ovis_aries
ENSPPRG00000002626	R3HDM1	100	94.480	ENSPPAG00000027858	R3HDM1	100	94.365	Pan_paniscus
ENSPPRG00000002626	R3HDM1	100	99.636	ENSPTIG00000016581	R3HDM1	100	99.636	Panthera_tigris_altaica
ENSPPRG00000002626	R3HDM1	100	94.467	ENSPTRG00000012494	R3HDM1	100	94.365	Pan_troglodytes
ENSPPRG00000002626	R3HDM1	100	94.559	ENSPANG00000026448	R3HDM1	100	94.456	Papio_anubis
ENSPPRG00000002626	R3HDM1	94	76.038	ENSPKIG00000004328	r3hdm1	91	76.190	Paramormyrops_kingsleyae
ENSPPRG00000002626	R3HDM1	100	78.766	ENSPSIG00000012915	R3HDM1	100	78.675	Pelodiscus_sinensis
ENSPPRG00000002626	R3HDM1	100	89.251	ENSPEMG00000015187	R3hdm1	100	94.033	Peromyscus_maniculatus_bairdii
ENSPPRG00000002626	R3HDM1	90	55.615	ENSPMAG00000003369	-	98	43.572	Petromyzon_marinus
ENSPPRG00000002626	R3HDM1	100	90.934	ENSPCIG00000002491	R3HDM1	100	85.081	Phascolarctos_cinereus
ENSPPRG00000002626	R3HDM1	87	55.231	ENSPFOG00000015036	r3hdm1	94	55.231	Poecilia_formosa
ENSPPRG00000002626	R3HDM1	87	59.682	ENSPLAG00000018042	r3hdm1	91	59.682	Poecilia_latipinna
ENSPPRG00000002626	R3HDM1	87	59.682	ENSPMEG00000023947	r3hdm1	91	59.682	Poecilia_mexicana
ENSPPRG00000002626	R3HDM1	80	67.961	ENSPREG00000007902	r3hdm1	94	60.533	Poecilia_reticulata
ENSPPRG00000002626	R3HDM1	100	93.659	ENSPPYG00000012815	R3HDM1	100	93.569	Pongo_abelii
ENSPPRG00000002626	R3HDM1	100	83.076	ENSPCAG00000006208	R3HDM1	100	83.076	Procavia_capensis
ENSPPRG00000002626	R3HDM1	100	92.671	ENSPCOG00000012698	R3HDM1	100	92.671	Propithecus_coquereli
ENSPPRG00000002626	R3HDM1	100	87.059	ENSPVAG00000006098	R3HDM1	100	86.968	Pteropus_vampyrus
ENSPPRG00000002626	R3HDM1	88	76.282	ENSPNAG00000005436	R3HDM1	99	61.294	Pygocentrus_nattereri
ENSPPRG00000002626	R3HDM1	66	38.649	ENSPNAG00000004162	arpp21	68	41.021	Pygocentrus_nattereri
ENSPPRG00000002626	R3HDM1	94	74.204	ENSPNAG00000013952	r3hdm1	89	74.286	Pygocentrus_nattereri
ENSPPRG00000002626	R3HDM1	100	88.106	ENSRNOG00000004099	R3hdm1	100	88.085	Rattus_norvegicus
ENSPPRG00000002626	R3HDM1	100	93.484	ENSRBIG00000033317	R3HDM1	100	98.524	Rhinopithecus_bieti
ENSPPRG00000002626	R3HDM1	100	97.238	ENSRROG00000034534	R3HDM1	100	94.256	Rhinopithecus_roxellana
ENSPPRG00000002626	R3HDM1	100	94.470	ENSSBOG00000020389	R3HDM1	100	94.379	Saimiri_boliviensis_boliviensis
ENSPPRG00000002626	R3HDM1	100	90.934	ENSSHAG00000016999	R3HDM1	100	85.377	Sarcophilus_harrisii
ENSPPRG00000002626	R3HDM1	100	72.011	ENSSFOG00015014134	r3hdm1	100	70.631	Scleropages_formosus
ENSPPRG00000002626	R3HDM1	100	56.901	ENSSFOG00015019851	-	99	57.653	Scleropages_formosus
ENSPPRG00000002626	R3HDM1	99	60.000	ENSSMAG00000001669	r3hdm1	99	44.473	Scophthalmus_maximus
ENSPPRG00000002626	R3HDM1	87	62.234	ENSSDUG00000010749	r3hdm1	91	62.234	Seriola_dumerili
ENSPPRG00000002626	R3HDM1	92	68.590	ENSSLDG00000004499	r3hdm1	91	56.968	Seriola_lalandi_dorsalis
ENSPPRG00000002626	R3HDM1	69	84.385	ENSSARG00000000352	-	69	84.385	Sorex_araneus
ENSPPRG00000002626	R3HDM1	100	80.780	ENSSPUG00000004167	R3HDM1	100	80.508	Sphenodon_punctatus
ENSPPRG00000002626	R3HDM1	87	62.933	ENSSPAG00000004648	r3hdm1	91	62.933	Stegastes_partitus
ENSPPRG00000002626	R3HDM1	100	98.619	ENSSSCG00000015692	R3HDM1	100	96.821	Sus_scrofa
ENSPPRG00000002626	R3HDM1	100	73.960	ENSTGUG00000011750	R3HDM1	100	74.051	Taeniopygia_guttata
ENSPPRG00000002626	R3HDM1	87	58.549	ENSTRUG00000011654	r3hdm1	91	58.549	Takifugu_rubripes
ENSPPRG00000002626	R3HDM1	84	47.155	ENSTNIG00000010362	r3hdm1	95	47.084	Tetraodon_nigroviridis
ENSPPRG00000002626	R3HDM1	100	89.263	ENSTTRG00000003935	R3HDM1	100	89.263	Tursiops_truncatus
ENSPPRG00000002626	R3HDM1	70	98.452	ENSUAMG00000024806	R3HDM1	99	96.863	Ursus_americanus
ENSPPRG00000002626	R3HDM1	100	99.448	ENSUMAG00000005552	R3HDM1	100	97.222	Ursus_maritimus
ENSPPRG00000002626	R3HDM1	97	98.246	ENSVPAG00000007333	R3HDM1	93	98.246	Vicugna_pacos
ENSPPRG00000002626	R3HDM1	100	99.171	ENSVVUG00000006457	R3HDM1	100	95.507	Vulpes_vulpes
ENSPPRG00000002626	R3HDM1	89	67.778	ENSXETG00000019330	r3hdm1	100	67.475	Xenopus_tropicalis
ENSPPRG00000002626	R3HDM1	71	50.641	ENSXCOG00000017448	r3hdm1	94	49.807	Xiphophorus_couchianus
ENSPPRG00000002626	R3HDM1	87	61.333	ENSXMAG00000007885	r3hdm1	82	67.638	Xiphophorus_maculatus