EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPRG00000006546 (Gene tree)
Gene ID: 109278457
Gene Symbol: RBFOX1
Alias: -
Full Name: RNA binding fox-1 homolog 1
Gene Type: protein_coding
Species: Panthera_pardus
Status: putative
Strand: Plus strand
Length: 2138922 bases
Position: chrKV860325.1:3819918-5958839
Accession: 109278457
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPRP00000012371	Fox-1_C	PF12414.8	7.6e-43	1	1
ENSPPRP00000012457	Fox-1_C	PF12414.8	1.3e-42	1	1
ENSPPRP00000012382	Fox-1_C	PF12414.8	1.3e-40	1	1
ENSPPRP00000012421	Fox-1_C	PF12414.8	1.8e-40	1	1
ENSPPRP00000012425	Fox-1_C	PF12414.8	1.9e-40	1	1
ENSPPRP00000012499	Fox-1_C	PF12414.8	2.6e-40	1	1
ENSPPRP00000012521	Fox-1_C	PF12414.8	3.7e-40	1	1
ENSPPRP00000012371	RRM_1	PF00076.22	3e-18	1	1
ENSPPRP00000012382	RRM_1	PF00076.22	3.2e-18	1	1
ENSPPRP00000012457	RRM_1	PF00076.22	3.6e-18	1	1
ENSPPRP00000012499	RRM_1	PF00076.22	4.1e-18	1	1
ENSPPRP00000012521	RRM_1	PF00076.22	5.8e-18	1	1
ENSPPRP00000012425	RRM_1	PF00076.22	5.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPRT00000010514	RBFOX1-205	1278	-	ENSPPRP00000012457	425 (aa)	-	-
ENSPPRT00000010478	RBFOX1-203	1143	-	ENSPPRP00000012421	380 (aa)	-	-
ENSPPRT00000010482	RBFOX1-204	1176	-	ENSPPRP00000012425	391 (aa)	-	UPI000DE7BF95
ENSPPRT00000010435	RBFOX1-202	1257	XM_019468833	ENSPPRP00000012382	418 (aa)	XP_019324378	UPI000298D529
ENSPPRT00000010428	RBFOX1-201	1128	-	ENSPPRP00000012371	375 (aa)	-	-
ENSPPRT00000010584	RBFOX1-207	1401	XM_019468829	ENSPPRP00000012499	466 (aa)	XP_019324374	UPI000DE7D79C
ENSPPRT00000010573	RBFOX1-206	1740	XM_019468806	ENSPPRP00000012521	579 (aa)	XP_019324351	UPI000905366A

Gene Model

Click here to download ENSPPRG00000006546's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPRG00000006546's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPRG00000006546	RBFOX1	79	67.059	ENSPPRG00000007819	RBFOX3	100	67.887
ENSPPRG00000006546	RBFOX1	97	62.745	ENSPPRG00000015635	RBFOX2	96	67.330

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPRG00000006546	RBFOX1	100	99.233	ENSG00000078328	RBFOX1	100	99.240	Homo_sapiens
ENSPPRG00000006546	RBFOX1	99	80.720	ENSAPOG00000003197	rbfox1	98	81.627	Acanthochromis_polyacanthus
ENSPPRG00000006546	RBFOX1	61	97.826	ENSAMEG00000008605	RBFOX1	100	96.800	Ailuropoda_melanoleuca
ENSPPRG00000006546	RBFOX1	64	71.747	ENSACIG00000005478	rbfox1	68	71.747	Amphilophus_citrinellus
ENSPPRG00000006546	RBFOX1	70	77.857	ENSAOCG00000008283	rbfox1	96	77.500	Amphiprion_ocellaris
ENSPPRG00000006546	RBFOX1	93	71.662	ENSAPEG00000010636	rbfox1	100	71.545	Amphiprion_percula
ENSPPRG00000006546	RBFOX1	72	75.258	ENSATEG00000007513	rbfox1	97	75.352	Anabas_testudineus
ENSPPRG00000006546	RBFOX1	94	92.602	ENSAPLG00000013263	RBFOX1	98	92.602	Anas_platyrhynchos
ENSPPRG00000006546	RBFOX1	97	84.694	ENSACAG00000004013	RBFOX1	98	85.751	Anolis_carolinensis
ENSPPRG00000006546	RBFOX1	100	98.977	ENSANAG00000029527	RBFOX1	100	98.977	Aotus_nancymaae
ENSPPRG00000006546	RBFOX1	60	87.168	ENSAMXG00000002431	rbfox1	64	89.041	Astyanax_mexicanus
ENSPPRG00000006546	RBFOX1	93	98.462	ENSBTAG00000007210	RBFOX1	98	98.462	Bos_taurus
ENSPPRG00000006546	RBFOX1	100	98.721	ENSCJAG00000017351	RBFOX1	100	98.721	Callithrix_jacchus
ENSPPRG00000006546	RBFOX1	100	99.761	ENSCAFG00000019082	RBFOX1	100	99.761	Canis_familiaris
ENSPPRG00000006546	RBFOX1	71	99.662	ENSCAFG00020024881	RBFOX1	83	99.662	Canis_lupus_dingo
ENSPPRG00000006546	RBFOX1	93	98.462	ENSCHIG00000023549	RBFOX1	98	98.462	Capra_hircus
ENSPPRG00000006546	RBFOX1	96	98.061	ENSTSYG00000005334	RBFOX1	100	98.555	Carlito_syrichta
ENSPPRG00000006546	RBFOX1	100	97.368	ENSCAPG00000017669	RBFOX1	100	97.368	Cavia_aperea
ENSPPRG00000006546	RBFOX1	100	97.368	ENSCPOG00000011314	RBFOX1	100	97.368	Cavia_porcellus
ENSPPRG00000006546	RBFOX1	100	98.133	ENSCCAG00000023031	RBFOX1	99	99.164	Cebus_capucinus
ENSPPRG00000006546	RBFOX1	100	99.233	ENSCATG00000033816	RBFOX1	100	99.233	Cercocebus_atys
ENSPPRG00000006546	RBFOX1	100	97.368	ENSCLAG00000012761	RBFOX1	100	97.368	Chinchilla_lanigera
ENSPPRG00000006546	RBFOX1	90	93.243	ENSCSAG00000008739	RBFOX1	98	98.378	Chlorocebus_sabaeus
ENSPPRG00000006546	RBFOX1	100	76.555	ENSCHOG00000012843	RBFOX1	100	76.555	Choloepus_hoffmanni
ENSPPRG00000006546	RBFOX1	99	93.566	ENSCPBG00000026626	RBFOX1	98	94.615	Chrysemys_picta_bellii
ENSPPRG00000006546	RBFOX1	100	99.233	ENSCANG00000033125	RBFOX1	100	99.233	Colobus_angolensis_palliatus
ENSPPRG00000006546	RBFOX1	100	97.368	ENSCGRG00001013729	Rbfox1	100	97.368	Cricetulus_griseus_chok1gshd
ENSPPRG00000006546	RBFOX1	100	97.368	ENSCGRG00000003272	Rbfox1	100	97.368	Cricetulus_griseus_crigri
ENSPPRG00000006546	RBFOX1	93	76.757	ENSCSEG00000008840	rbfox1	100	76.757	Cynoglossus_semilaevis
ENSPPRG00000006546	RBFOX1	97	88.154	ENSDARG00000014746	rbfox1	99	87.912	Danio_rerio
ENSPPRG00000006546	RBFOX1	94	96.164	ENSDNOG00000043612	RBFOX1	94	96.164	Dasypus_novemcinctus
ENSPPRG00000006546	RBFOX1	93	93.639	ENSDORG00000010024	Rbfox1	100	93.059	Dipodomys_ordii
ENSPPRG00000006546	RBFOX1	100	78.947	ENSETEG00000003771	RBFOX1	100	78.947	Echinops_telfairi
ENSPPRG00000006546	RBFOX1	97	99.259	ENSEASG00005011599	RBFOX1	98	99.259	Equus_asinus_asinus
ENSPPRG00000006546	RBFOX1	97	99.012	ENSECAG00000012667	RBFOX1	98	99.012	Equus_caballus
ENSPPRG00000006546	RBFOX1	83	74.766	ENSELUG00000013096	rbfox1	99	64.876	Esox_lucius
ENSPPRG00000006546	RBFOX1	100	100.000	ENSFCAG00000025322	RBFOX1	100	100.000	Felis_catus
ENSPPRG00000006546	RBFOX1	78	92.793	ENSFALG00000004027	RBFOX1	100	92.793	Ficedula_albicollis
ENSPPRG00000006546	RBFOX1	100	97.847	ENSFDAG00000007388	RBFOX1	100	97.847	Fukomys_damarensis
ENSPPRG00000006546	RBFOX1	100	93.541	ENSGALG00000034325	RBFOX1	100	93.541	Gallus_gallus
ENSPPRG00000006546	RBFOX1	100	92.823	ENSGAGG00000023681	RBFOX1	100	92.857	Gopherus_agassizii
ENSPPRG00000006546	RBFOX1	100	99.233	ENSGGOG00000016871	-	100	99.233	Gorilla_gorilla
ENSPPRG00000006546	RBFOX1	100	97.608	ENSHGLG00000016944	RBFOX1	100	97.608	Heterocephalus_glaber_female
ENSPPRG00000006546	RBFOX1	100	97.608	ENSHGLG00100003272	RBFOX1	100	97.608	Heterocephalus_glaber_male
ENSPPRG00000006546	RBFOX1	83	76.875	ENSHCOG00000016419	rbfox1	91	76.875	Hippocampus_comes
ENSPPRG00000006546	RBFOX1	93	90.571	ENSIPUG00000015215	rbfox1	100	90.571	Ictalurus_punctatus
ENSPPRG00000006546	RBFOX1	100	96.890	ENSSTOG00000000322	RBFOX1	100	96.890	Ictidomys_tridecemlineatus
ENSPPRG00000006546	RBFOX1	100	94.737	ENSJJAG00000002575	Rbfox1	100	94.737	Jaculus_jaculus
ENSPPRG00000006546	RBFOX1	93	78.804	ENSLBEG00000014659	rbfox1	97	78.804	Labrus_bergylta
ENSPPRG00000006546	RBFOX1	97	85.787	ENSLOCG00000006675	rbfox1	99	85.787	Lepisosteus_oculatus
ENSPPRG00000006546	RBFOX1	74	99.026	ENSLAFG00000011480	RBFOX1	100	99.026	Loxodonta_africana
ENSPPRG00000006546	RBFOX1	100	98.977	ENSMFAG00000036447	RBFOX1	100	98.977	Macaca_fascicularis
ENSPPRG00000006546	RBFOX1	100	98.977	ENSMMUG00000003458	RBFOX1	100	98.977	Macaca_mulatta
ENSPPRG00000006546	RBFOX1	100	98.977	ENSMNEG00000032034	RBFOX1	100	98.977	Macaca_nemestrina
ENSPPRG00000006546	RBFOX1	100	99.233	ENSMLEG00000015382	RBFOX1	100	99.233	Mandrillus_leucophaeus
ENSPPRG00000006546	RBFOX1	93	80.822	ENSMAMG00000003142	rbfox1	100	81.370	Mastacembelus_armatus
ENSPPRG00000006546	RBFOX1	68	88.772	ENSMGAG00000008606	RBFOX1	96	88.571	Meleagris_gallopavo
ENSPPRG00000006546	RBFOX1	95	54.301	ENSMAUG00000020570	Rbfox1	96	55.699	Mesocricetus_auratus
ENSPPRG00000006546	RBFOX1	100	98.465	ENSMICG00000034286	RBFOX1	100	98.465	Microcebus_murinus
ENSPPRG00000006546	RBFOX1	100	97.368	ENSMOCG00000020932	Rbfox1	100	97.368	Microtus_ochrogaster
ENSPPRG00000006546	RBFOX1	84	77.358	ENSMMOG00000009716	rbfox1	86	78.205	Mola_mola
ENSPPRG00000006546	RBFOX1	86	92.373	ENSMODG00000005826	RBFOX1	100	97.740	Monodelphis_domestica
ENSPPRG00000006546	RBFOX1	99	81.462	ENSMALG00000003337	rbfox1	98	81.867	Monopterus_albus
ENSPPRG00000006546	RBFOX1	100	97.608	MGP_CAROLIEiJ_G0020427	Rbfox1	100	97.608	Mus_caroli
ENSPPRG00000006546	RBFOX1	100	97.368	ENSMUSG00000008658	Rbfox1	100	99.248	Mus_musculus
ENSPPRG00000006546	RBFOX1	100	97.608	MGP_PahariEiJ_G0016135	Rbfox1	100	97.608	Mus_pahari
ENSPPRG00000006546	RBFOX1	100	97.368	MGP_SPRETEiJ_G0021321	Rbfox1	100	97.368	Mus_spretus
ENSPPRG00000006546	RBFOX1	89	93.460	ENSMPUG00000014822	RBFOX1	93	98.638	Mustela_putorius_furo
ENSPPRG00000006546	RBFOX1	74	96.753	ENSMLUG00000015896	RBFOX1	100	96.753	Myotis_lucifugus
ENSPPRG00000006546	RBFOX1	100	98.086	ENSNGAG00000023276	Rbfox1	100	98.086	Nannospalax_galili
ENSPPRG00000006546	RBFOX1	100	61.667	ENSNBRG00000011084	rbfox1	98	61.667	Neolamprologus_brichardi
ENSPPRG00000006546	RBFOX1	100	98.400	ENSNLEG00000010017	-	100	98.400	Nomascus_leucogenys
ENSPPRG00000006546	RBFOX1	100	80.861	ENSMEUG00000012525	RBFOX1	100	80.861	Notamacropus_eugenii
ENSPPRG00000006546	RBFOX1	88	97.826	ENSOPRG00000006199	-	100	80.383	Ochotona_princeps
ENSPPRG00000006546	RBFOX1	100	96.651	ENSODEG00000013166	RBFOX1	100	96.651	Octodon_degus
ENSPPRG00000006546	RBFOX1	89	91.257	ENSOANG00000002379	RBFOX1	98	95.676	Ornithorhynchus_anatinus
ENSPPRG00000006546	RBFOX1	58	96.330	ENSOCUG00000001205	-	100	94.222	Oryctolagus_cuniculus
ENSPPRG00000006546	RBFOX1	94	96.164	ENSOGAG00000025535	RBFOX1	98	96.164	Otolemur_garnettii
ENSPPRG00000006546	RBFOX1	59	93.074	ENSOARG00000005135	RBFOX1	99	93.074	Ovis_aries
ENSPPRG00000006546	RBFOX1	100	99.233	ENSPPAG00000036238	-	100	99.233	Pan_paniscus
ENSPPRG00000006546	RBFOX1	96	86.450	ENSPTIG00000021154	RBFOX1	99	86.104	Panthera_tigris_altaica
ENSPPRG00000006546	RBFOX1	100	99.233	ENSPTRG00000007744	RBFOX1	100	99.233	Pan_troglodytes
ENSPPRG00000006546	RBFOX1	100	99.233	ENSPANG00000026500	RBFOX1	100	99.233	Papio_anubis
ENSPPRG00000006546	RBFOX1	97	89.041	ENSPKIG00000009667	-	95	90.616	Paramormyrops_kingsleyae
ENSPPRG00000006546	RBFOX1	73	90.182	ENSPKIG00000019353	rbfox1	86	92.075	Paramormyrops_kingsleyae
ENSPPRG00000006546	RBFOX1	93	92.821	ENSPSIG00000006523	RBFOX1	97	92.821	Pelodiscus_sinensis
ENSPPRG00000006546	RBFOX1	100	97.608	ENSPEMG00000017607	Rbfox1	100	97.608	Peromyscus_maniculatus_bairdii
ENSPPRG00000006546	RBFOX1	70	91.126	ENSPCIG00000026887	RBFOX1	100	91.126	Phascolarctos_cinereus
ENSPPRG00000006546	RBFOX1	89	93.733	ENSPPYG00000007079	-	93	98.910	Pongo_abelii
ENSPPRG00000006546	RBFOX1	90	89.418	ENSPCAG00000002630	RBFOX1	100	89.418	Procavia_capensis
ENSPPRG00000006546	RBFOX1	100	98.210	ENSPCOG00000025687	RBFOX1	100	98.210	Propithecus_coquereli
ENSPPRG00000006546	RBFOX1	100	94.498	ENSPVAG00000013467	RBFOX1	100	94.498	Pteropus_vampyrus
ENSPPRG00000006546	RBFOX1	93	87.534	ENSPNAG00000023109	rbfox1	100	87.534	Pygocentrus_nattereri
ENSPPRG00000006546	RBFOX1	100	94.976	ENSRNOG00000002827	Rbfox1	100	94.976	Rattus_norvegicus
ENSPPRG00000006546	RBFOX1	96	98.892	ENSRBIG00000044478	RBFOX1	100	99.422	Rhinopithecus_bieti
ENSPPRG00000006546	RBFOX1	100	99.233	ENSRROG00000044411	RBFOX1	100	99.233	Rhinopithecus_roxellana
ENSPPRG00000006546	RBFOX1	100	98.721	ENSSBOG00000033726	RBFOX1	100	98.721	Saimiri_boliviensis_boliviensis
ENSPPRG00000006546	RBFOX1	97	90.000	ENSSHAG00000009257	RBFOX1	98	91.304	Sarcophilus_harrisii
ENSPPRG00000006546	RBFOX1	97	77.624	ENSSFOG00015023675	rbfox1	97	88.889	Scleropages_formosus
ENSPPRG00000006546	RBFOX1	89	74.636	ENSSFOG00015009955	-	87	74.636	Scleropages_formosus
ENSPPRG00000006546	RBFOX1	99	81.330	ENSSMAG00000015505	rbfox1	95	81.701	Scophthalmus_maximus
ENSPPRG00000006546	RBFOX1	97	79.891	ENSSDUG00000016413	rbfox1	99	80.000	Seriola_dumerili
ENSPPRG00000006546	RBFOX1	83	78.914	ENSSLDG00000009353	rbfox1	95	77.815	Seriola_lalandi_dorsalis
ENSPPRG00000006546	RBFOX1	83	89.776	ENSSPUG00000009732	RBFOX1	87	89.776	Sphenodon_punctatus
ENSPPRG00000006546	RBFOX1	100	78.307	ENSSPAG00000009723	rbfox1	100	81.266	Stegastes_partitus
ENSPPRG00000006546	RBFOX1	97	98.519	ENSSSCG00000007917	RBFOX1	100	98.870	Sus_scrofa
ENSPPRG00000006546	RBFOX1	93	92.821	ENSTGUG00000004562	RBFOX1	100	92.821	Taeniopygia_guttata
ENSPPRG00000006546	RBFOX1	97	81.530	ENSTRUG00000020940	rbfox1	99	81.530	Takifugu_rubripes
ENSPPRG00000006546	RBFOX1	64	63.066	ENSTNIG00000002567	rbfox1	100	64.808	Tetraodon_nigroviridis
ENSPPRG00000006546	RBFOX1	81	89.655	ENSTBEG00000009169	-	81	89.655	Tupaia_belangeri
ENSPPRG00000006546	RBFOX1	100	98.565	ENSTTRG00000005700	RBFOX1	100	98.565	Tursiops_truncatus
ENSPPRG00000006546	RBFOX1	92	95.052	ENSUAMG00000024633	RBFOX1	97	95.052	Ursus_americanus
ENSPPRG00000006546	RBFOX1	95	83.060	ENSUMAG00000003579	RBFOX1	97	85.938	Ursus_maritimus
ENSPPRG00000006546	RBFOX1	81	100.000	ENSVPAG00000001284	RBFOX1	81	100.000	Vicugna_pacos
ENSPPRG00000006546	RBFOX1	98	98.638	ENSVVUG00000017311	RBFOX1	98	98.378	Vulpes_vulpes