EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPRG00000008833 (Gene tree)
Gene ID: 109259108
Gene Symbol: PSPC1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Panthera_pardus
Status: putative
Strand: Minus strand
Length: 76983 bases
Position: chrKV860466.1:790757-867739
Accession: 109259108
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPRP00000016595	RRM_1	PF00076.22	2.8e-32	1	2
ENSPPRP00000016595	RRM_1	PF00076.22	2.8e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPRT00000014851	PSPC1-201	2247	XM_019436456	ENSPPRP00000016595	521 (aa)	XP_019292001	UPI000298B762

Gene Model

Click here to download ENSPPRG00000008833's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPRG00000008833's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPRG00000008833	PSPC1	73	54.887	ENSPPRG00000015478	-	80	67.832
ENSPPRG00000008833	PSPC1	89	60.390	ENSPPRG00000024537	-	77	69.613

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPRG00000008833	PSPC1	100	98.853	ENSG00000121390	PSPC1	100	98.853	Homo_sapiens
ENSPPRG00000008833	PSPC1	88	70.440	ENSAPOG00000015946	pspc1	79	73.953	Acanthochromis_polyacanthus
ENSPPRG00000008833	PSPC1	100	99.424	ENSAMEG00000017420	PSPC1	100	99.424	Ailuropoda_melanoleuca
ENSPPRG00000008833	PSPC1	88	62.208	ENSACIG00000018695	pspc1	87	59.660	Amphilophus_citrinellus
ENSPPRG00000008833	PSPC1	88	69.937	ENSAOCG00000005279	pspc1	78	73.488	Amphiprion_ocellaris
ENSPPRG00000008833	PSPC1	88	71.064	ENSAPEG00000015927	pspc1	79	73.488	Amphiprion_percula
ENSPPRG00000008833	PSPC1	88	58.386	ENSATEG00000004878	pspc1	76	62.410	Anabas_testudineus
ENSPPRG00000008833	PSPC1	77	94.059	ENSAPLG00000006246	PSPC1	100	94.059	Anas_platyrhynchos
ENSPPRG00000008833	PSPC1	89	60.944	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSPPRG00000008833	PSPC1	89	91.845	ENSACAG00000002093	PSPC1	99	82.746	Anolis_carolinensis
ENSPPRG00000008833	PSPC1	90	52.500	ENSACAG00000013307	-	56	64.917	Anolis_carolinensis
ENSPPRG00000008833	PSPC1	100	98.848	ENSANAG00000000059	PSPC1	100	98.848	Aotus_nancymaae
ENSPPRG00000008833	PSPC1	99	57.274	ENSACLG00000027220	pspc1	87	59.101	Astatotilapia_calliptera
ENSPPRG00000008833	PSPC1	88	68.750	ENSAMXG00000036881	pspc1	80	73.333	Astyanax_mexicanus
ENSPPRG00000008833	PSPC1	100	96.545	ENSBTAG00000003934	PSPC1	100	96.545	Bos_taurus
ENSPPRG00000008833	PSPC1	100	98.848	ENSCJAG00000004554	PSPC1	100	98.848	Callithrix_jacchus
ENSPPRG00000008833	PSPC1	100	99.424	ENSCAFG00020002009	PSPC1	100	99.424	Canis_lupus_dingo
ENSPPRG00000008833	PSPC1	100	96.545	ENSCHIG00000016708	PSPC1	100	96.545	Capra_hircus
ENSPPRG00000008833	PSPC1	77	92.289	ENSTSYG00000032882	PSPC1	93	85.986	Carlito_syrichta
ENSPPRG00000008833	PSPC1	100	97.505	ENSCPOG00000000395	PSPC1	100	97.505	Cavia_porcellus
ENSPPRG00000008833	PSPC1	100	98.848	ENSCCAG00000033498	PSPC1	100	98.848	Cebus_capucinus
ENSPPRG00000008833	PSPC1	100	98.470	ENSCATG00000036434	PSPC1	100	98.470	Cercocebus_atys
ENSPPRG00000008833	PSPC1	88	88.337	ENSCLAG00000005241	PSPC1	99	88.337	Chinchilla_lanigera
ENSPPRG00000008833	PSPC1	100	91.396	ENSCHOG00000008913	PSPC1	100	91.013	Choloepus_hoffmanni
ENSPPRG00000008833	PSPC1	99	86.882	ENSCPBG00000020859	PSPC1	99	87.287	Chrysemys_picta_bellii
ENSPPRG00000008833	PSPC1	59	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSPPRG00000008833	PSPC1	78	85.926	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSPPRG00000008833	PSPC1	100	97.132	ENSCGRG00001018368	Pspc1	100	97.132	Cricetulus_griseus_chok1gshd
ENSPPRG00000008833	PSPC1	100	97.132	ENSCGRG00000011724	Pspc1	100	97.132	Cricetulus_griseus_crigri
ENSPPRG00000008833	PSPC1	87	66.523	ENSCVAG00000007679	-	78	68.720	Cyprinodon_variegatus
ENSPPRG00000008833	PSPC1	99	66.479	ENSDARG00000006621	pspc1	100	67.391	Danio_rerio
ENSPPRG00000008833	PSPC1	100	96.558	ENSDNOG00000011078	PSPC1	100	96.558	Dasypus_novemcinctus
ENSPPRG00000008833	PSPC1	100	94.073	ENSDORG00000016050	Pspc1	100	94.073	Dipodomys_ordii
ENSPPRG00000008833	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSPPRG00000008833	PSPC1	88	59.298	ENSEBUG00000003964	-	62	72.464	Eptatretus_burgeri
ENSPPRG00000008833	PSPC1	62	45.087	ENSEBUG00000010133	pspc1	82	47.302	Eptatretus_burgeri
ENSPPRG00000008833	PSPC1	100	98.464	ENSEASG00005000119	PSPC1	100	98.464	Equus_asinus_asinus
ENSPPRG00000008833	PSPC1	100	98.464	ENSECAG00000017286	PSPC1	100	98.464	Equus_caballus
ENSPPRG00000008833	PSPC1	88	81.875	ENSEEUG00000011288	-	100	66.027	Erinaceus_europaeus
ENSPPRG00000008833	PSPC1	99	65.385	ENSELUG00000003746	pspc1	78	82.154	Esox_lucius
ENSPPRG00000008833	PSPC1	100	100.000	ENSFCAG00000027841	PSPC1	100	100.000	Felis_catus
ENSPPRG00000008833	PSPC1	89	94.861	ENSFALG00000008750	PSPC1	99	87.571	Ficedula_albicollis
ENSPPRG00000008833	PSPC1	100	95.777	ENSFDAG00000002617	PSPC1	100	95.777	Fukomys_damarensis
ENSPPRG00000008833	PSPC1	88	66.953	ENSGMOG00000015074	pspc1	86	66.091	Gadus_morhua
ENSPPRG00000008833	PSPC1	99	87.643	ENSGALG00000017142	PSPC1	99	87.689	Gallus_gallus
ENSPPRG00000008833	PSPC1	62	78.154	ENSGAFG00000006327	pspc1	67	78.154	Gambusia_affinis
ENSPPRG00000008833	PSPC1	88	65.948	ENSGACG00000014901	pspc1	92	73.414	Gasterosteus_aculeatus
ENSPPRG00000008833	PSPC1	99	86.882	ENSGAGG00000019164	PSPC1	99	87.097	Gopherus_agassizii
ENSPPRG00000008833	PSPC1	89	60.300	ENSGAGG00000017325	-	56	68.306	Gopherus_agassizii
ENSPPRG00000008833	PSPC1	100	98.662	ENSGGOG00000003414	PSPC1	100	98.662	Gorilla_gorilla
ENSPPRG00000008833	PSPC1	99	64.695	ENSHBUG00000001139	pspc1	100	64.299	Haplochromis_burtoni
ENSPPRG00000008833	PSPC1	100	97.889	ENSHGLG00000018811	PSPC1	100	97.889	Heterocephalus_glaber_female
ENSPPRG00000008833	PSPC1	67	93.103	ENSHGLG00100007962	PSPC1	100	93.103	Heterocephalus_glaber_male
ENSPPRG00000008833	PSPC1	73	70.757	ENSHCOG00000013251	pspc1	83	71.390	Hippocampus_comes
ENSPPRG00000008833	PSPC1	99	67.917	ENSIPUG00000013192	pspc1	88	73.885	Ictalurus_punctatus
ENSPPRG00000008833	PSPC1	100	98.088	ENSSTOG00000026833	PSPC1	100	98.088	Ictidomys_tridecemlineatus
ENSPPRG00000008833	PSPC1	100	97.514	ENSJJAG00000018334	Pspc1	100	97.514	Jaculus_jaculus
ENSPPRG00000008833	PSPC1	88	55.724	ENSKMAG00000013525	-	84	54.409	Kryptolebias_marmoratus
ENSPPRG00000008833	PSPC1	92	66.203	ENSLBEG00000004474	pspc1	73	74.716	Labrus_bergylta
ENSPPRG00000008833	PSPC1	99	76.580	ENSLACG00000010762	PSPC1	99	78.695	Latimeria_chalumnae
ENSPPRG00000008833	PSPC1	88	84.599	ENSLOCG00000010832	pspc1	99	77.885	Lepisosteus_oculatus
ENSPPRG00000008833	PSPC1	100	96.941	ENSLAFG00000010968	PSPC1	100	96.941	Loxodonta_africana
ENSPPRG00000008833	PSPC1	100	98.470	ENSMFAG00000032728	PSPC1	100	98.470	Macaca_fascicularis
ENSPPRG00000008833	PSPC1	100	98.470	ENSMMUG00000020262	PSPC1	100	98.470	Macaca_mulatta
ENSPPRG00000008833	PSPC1	100	98.470	ENSMNEG00000027401	PSPC1	100	98.470	Macaca_nemestrina
ENSPPRG00000008833	PSPC1	100	99.499	ENSMLEG00000039043	PSPC1	100	99.499	Mandrillus_leucophaeus
ENSPPRG00000008833	PSPC1	88	67.629	ENSMAMG00000004333	pspc1	77	71.860	Mastacembelus_armatus
ENSPPRG00000008833	PSPC1	99	57.274	ENSMZEG00005005726	pspc1	87	59.101	Maylandia_zebra
ENSPPRG00000008833	PSPC1	78	93.842	ENSMGAG00000015134	PSPC1	100	93.842	Meleagris_gallopavo
ENSPPRG00000008833	PSPC1	88	91.558	ENSMAUG00000021067	Pspc1	99	91.126	Mesocricetus_auratus
ENSPPRG00000008833	PSPC1	100	98.088	ENSMICG00000013970	PSPC1	100	98.088	Microcebus_murinus
ENSPPRG00000008833	PSPC1	100	97.132	ENSMOCG00000006060	Pspc1	100	97.132	Microtus_ochrogaster
ENSPPRG00000008833	PSPC1	94	42.803	ENSMMOG00000004352	pspc1	58	52.923	Mola_mola
ENSPPRG00000008833	PSPC1	93	96.082	ENSMODG00000008029	PSPC1	78	96.082	Monodelphis_domestica
ENSPPRG00000008833	PSPC1	88	69.742	ENSMALG00000008914	pspc1	88	67.804	Monopterus_albus
ENSPPRG00000008833	PSPC1	100	97.137	MGP_CAROLIEiJ_G0019341	Pspc1	100	97.137	Mus_caroli
ENSPPRG00000008833	PSPC1	100	97.328	ENSMUSG00000021938	Pspc1	100	97.328	Mus_musculus
ENSPPRG00000008833	PSPC1	100	97.137	MGP_PahariEiJ_G0030359	Pspc1	100	97.137	Mus_pahari
ENSPPRG00000008833	PSPC1	100	97.137	MGP_SPRETEiJ_G0020232	Pspc1	100	97.137	Mus_spretus
ENSPPRG00000008833	PSPC1	100	99.424	ENSMPUG00000013347	PSPC1	100	99.424	Mustela_putorius_furo
ENSPPRG00000008833	PSPC1	100	97.137	ENSMLUG00000017663	PSPC1	100	97.137	Myotis_lucifugus
ENSPPRG00000008833	PSPC1	100	97.323	ENSNGAG00000011271	Pspc1	100	97.323	Nannospalax_galili
ENSPPRG00000008833	PSPC1	74	64.411	ENSNBRG00000014059	pspc1	76	69.207	Neolamprologus_brichardi
ENSPPRG00000008833	PSPC1	100	98.662	ENSNLEG00000001294	PSPC1	100	98.662	Nomascus_leucogenys
ENSPPRG00000008833	PSPC1	84	93.359	ENSMEUG00000000476	PSPC1	84	94.531	Notamacropus_eugenii
ENSPPRG00000008833	PSPC1	100	86.564	ENSODEG00000007817	-	100	82.732	Octodon_degus
ENSPPRG00000008833	PSPC1	100	85.249	ENSODEG00000019012	-	100	87.097	Octodon_degus
ENSPPRG00000008833	PSPC1	99	64.695	ENSONIG00000012010	pspc1	99	63.586	Oreochromis_niloticus
ENSPPRG00000008833	PSPC1	77	97.995	ENSOANG00000009017	-	100	97.995	Ornithorhynchus_anatinus
ENSPPRG00000008833	PSPC1	99	66.475	ENSOANG00000011381	-	99	64.559	Ornithorhynchus_anatinus
ENSPPRG00000008833	PSPC1	100	97.897	ENSOCUG00000006153	PSPC1	100	97.897	Oryctolagus_cuniculus
ENSPPRG00000008833	PSPC1	88	70.213	ENSORLG00000004232	-	87	64.596	Oryzias_latipes
ENSPPRG00000008833	PSPC1	88	69.787	ENSORLG00020000578	PSPC1	87	65.618	Oryzias_latipes_hni
ENSPPRG00000008833	PSPC1	88	70.638	ENSORLG00015017480	pspc1	82	69.108	Oryzias_latipes_hsok
ENSPPRG00000008833	PSPC1	100	98.662	ENSOGAG00000012643	PSPC1	100	98.662	Otolemur_garnettii
ENSPPRG00000008833	PSPC1	100	91.778	ENSOARG00000014163	PSPC1	100	91.778	Ovis_aries
ENSPPRG00000008833	PSPC1	89	92.903	ENSPPAG00000009836	PSPC1	93	99.695	Pan_paniscus
ENSPPRG00000008833	PSPC1	100	84.069	ENSPTIG00000016917	PSPC1	100	84.069	Panthera_tigris_altaica
ENSPPRG00000008833	PSPC1	98	97.276	ENSPTRG00000005677	PSPC1	99	98.765	Pan_troglodytes
ENSPPRG00000008833	PSPC1	100	98.662	ENSPANG00000001992	PSPC1	100	98.662	Papio_anubis
ENSPPRG00000008833	PSPC1	89	74.514	ENSPKIG00000003578	pspc1	81	77.650	Paramormyrops_kingsleyae
ENSPPRG00000008833	PSPC1	99	86.957	ENSPSIG00000005168	PSPC1	99	86.957	Pelodiscus_sinensis
ENSPPRG00000008833	PSPC1	59	70.476	ENSPMGG00000015135	pspc1	80	73.611	Periophthalmus_magnuspinnatus
ENSPPRG00000008833	PSPC1	100	97.514	ENSPEMG00000015214	Pspc1	100	97.514	Peromyscus_maniculatus_bairdii
ENSPPRG00000008833	PSPC1	53	44.948	ENSPMAG00000004618	pspc1	79	47.692	Petromyzon_marinus
ENSPPRG00000008833	PSPC1	99	96.552	ENSPCIG00000017680	PSPC1	100	96.552	Phascolarctos_cinereus
ENSPPRG00000008833	PSPC1	95	66.406	ENSPFOG00000003362	pspc1	88	68.288	Poecilia_formosa
ENSPPRG00000008833	PSPC1	69	64.658	ENSPLAG00000004407	-	52	60.647	Poecilia_latipinna
ENSPPRG00000008833	PSPC1	99	63.956	ENSPLAG00000011540	pspc1	99	62.991	Poecilia_latipinna
ENSPPRG00000008833	PSPC1	69	65.278	ENSPMEG00000001025	-	51	60.647	Poecilia_mexicana
ENSPPRG00000008833	PSPC1	99	63.586	ENSPMEG00000008322	pspc1	99	62.942	Poecilia_mexicana
ENSPPRG00000008833	PSPC1	99	63.873	ENSPREG00000007786	pspc1	99	62.617	Poecilia_reticulata
ENSPPRG00000008833	PSPC1	100	98.279	ENSPPYG00000005186	PSPC1	100	98.279	Pongo_abelii
ENSPPRG00000008833	PSPC1	66	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSPPRG00000008833	PSPC1	100	94.073	ENSPCOG00000014364	PSPC1	100	94.073	Propithecus_coquereli
ENSPPRG00000008833	PSPC1	100	95.202	ENSPVAG00000005036	PSPC1	100	95.202	Pteropus_vampyrus
ENSPPRG00000008833	PSPC1	99	57.643	ENSPNYG00000008893	pspc1	100	54.851	Pundamilia_nyererei
ENSPPRG00000008833	PSPC1	99	68.411	ENSPNAG00000016511	pspc1	100	68.224	Pygocentrus_nattereri
ENSPPRG00000008833	PSPC1	100	97.323	ENSRNOG00000020782	Pspc1	100	97.323	Rattus_norvegicus
ENSPPRG00000008833	PSPC1	93	99.179	ENSRBIG00000036057	PSPC1	100	99.179	Rhinopithecus_bieti
ENSPPRG00000008833	PSPC1	100	98.662	ENSRROG00000036334	PSPC1	100	98.662	Rhinopithecus_roxellana
ENSPPRG00000008833	PSPC1	79	88.862	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSPPRG00000008833	PSPC1	100	90.476	ENSSHAG00000004696	PSPC1	100	91.238	Sarcophilus_harrisii
ENSPPRG00000008833	PSPC1	82	79.391	ENSSFOG00015001395	pspc1	90	78.605	Scleropages_formosus
ENSPPRG00000008833	PSPC1	88	67.155	ENSSMAG00000001761	pspc1	82	76.970	Scophthalmus_maximus
ENSPPRG00000008833	PSPC1	88	69.168	ENSSDUG00000010651	pspc1	76	74.419	Seriola_dumerili
ENSPPRG00000008833	PSPC1	88	64.719	ENSSLDG00000004284	pspc1	81	62.269	Seriola_lalandi_dorsalis
ENSPPRG00000008833	PSPC1	100	90.403	ENSSARG00000000888	PSPC1	100	90.403	Sorex_araneus
ENSPPRG00000008833	PSPC1	89	53.814	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSPPRG00000008833	PSPC1	99	75.283	ENSSPUG00000008550	PSPC1	99	75.610	Sphenodon_punctatus
ENSPPRG00000008833	PSPC1	88	69.072	ENSSPAG00000001921	pspc1	77	73.023	Stegastes_partitus
ENSPPRG00000008833	PSPC1	100	97.510	ENSSSCG00000009569	PSPC1	100	97.510	Sus_scrofa
ENSPPRG00000008833	PSPC1	89	94.861	ENSTGUG00000011295	PSPC1	100	94.861	Taeniopygia_guttata
ENSPPRG00000008833	PSPC1	88	63.270	ENSTRUG00000011335	pspc1	77	66.180	Takifugu_rubripes
ENSPPRG00000008833	PSPC1	88	65.236	ENSTNIG00000010358	pspc1	84	66.746	Tetraodon_nigroviridis
ENSPPRG00000008833	PSPC1	100	77.543	ENSTBEG00000002361	PSPC1	100	75.816	Tupaia_belangeri
ENSPPRG00000008833	PSPC1	100	97.697	ENSTTRG00000003343	PSPC1	100	97.697	Tursiops_truncatus
ENSPPRG00000008833	PSPC1	67	99.427	ENSUAMG00000012309	PSPC1	100	99.427	Ursus_americanus
ENSPPRG00000008833	PSPC1	93	99.384	ENSUMAG00000013993	PSPC1	100	99.384	Ursus_maritimus
ENSPPRG00000008833	PSPC1	77	99.248	ENSVPAG00000010029	PSPC1	100	99.248	Vicugna_pacos
ENSPPRG00000008833	PSPC1	100	99.424	ENSVVUG00000006414	PSPC1	100	99.479	Vulpes_vulpes
ENSPPRG00000008833	PSPC1	69	72.087	ENSXCOG00000017438	pspc1	77	76.994	Xiphophorus_couchianus
ENSPPRG00000008833	PSPC1	69	72.358	ENSXMAG00000007929	pspc1	77	77.301	Xiphophorus_maculatus