EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPRG00000008929 (Gene tree)
Gene ID: 109253770
Gene Symbol: SMARCA1
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Panthera_pardus
Status: putative
Strand: Plus strand
Length: 71702 bases
Position: chrKV860380.1:4817173-4888874
Accession: 109253770
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPRP00000016639	ResIII	PF04851.15	1.3e-12	1	1
ENSPPRP00000016624	ResIII	PF04851.15	1.3e-12	1	1
ENSPPRP00000016639	DEAD	PF00270.29	1.2e-06	1	1
ENSPPRP00000016624	DEAD	PF00270.29	1.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPRT00000014872	SMARCA1-201	3210	XM_019427035	ENSPPRP00000016624	1069 (aa)	XP_019282580	UPI000905A42F
ENSPPRT00000014894	SMARCA1-202	3312	XM_019427034	ENSPPRP00000016639	1057 (aa)	XP_019282579	UPI000905ADF2

Gene Model

Click here to download ENSPPRG00000008929's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPRG00000008929's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPRG00000008929	SMARCA1	93	81.040	ENSPPRG00000004925	SMARCA5	93	81.855
ENSPPRG00000008929	SMARCA1	54	44.112	ENSPPRG00000010258	CHD1L	61	44.112
ENSPPRG00000008929	SMARCA1	51	48.606	ENSPPRG00000005839	HELLS	76	48.606

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPRG00000008929	SMARCA1	100	98.677	ENSG00000102038	SMARCA1	100	98.677	Homo_sapiens
ENSPPRG00000008929	SMARCA1	92	83.811	ENSAPOG00000016035	smarca5	98	84.245	Acanthochromis_polyacanthus
ENSPPRG00000008929	SMARCA1	100	98.224	ENSAMEG00000015218	SMARCA1	100	98.224	Ailuropoda_melanoleuca
ENSPPRG00000008929	SMARCA1	85	84.275	ENSACIG00000016982	smarca5	99	84.375	Amphilophus_citrinellus
ENSPPRG00000008929	SMARCA1	92	83.811	ENSAOCG00000015578	smarca5	95	82.828	Amphiprion_ocellaris
ENSPPRG00000008929	SMARCA1	92	83.811	ENSAPEG00000011117	smarca5	99	84.316	Amphiprion_percula
ENSPPRG00000008929	SMARCA1	93	83.401	ENSATEG00000012894	smarca5	95	82.828	Anabas_testudineus
ENSPPRG00000008929	SMARCA1	93	93.075	ENSAPLG00000013149	SMARCA1	100	93.075	Anas_platyrhynchos
ENSPPRG00000008929	SMARCA1	97	89.622	ENSACAG00000011376	SMARCA1	95	91.409	Anolis_carolinensis
ENSPPRG00000008929	SMARCA1	98	93.353	ENSANAG00000023098	SMARCA1	98	93.545	Aotus_nancymaae
ENSPPRG00000008929	SMARCA1	96	81.354	ENSACLG00000025356	smarca5	95	83.232	Astatotilapia_calliptera
ENSPPRG00000008929	SMARCA1	98	81.008	ENSAMXG00000005709	smarca5	94	84.103	Astyanax_mexicanus
ENSPPRG00000008929	SMARCA1	88	88.387	ENSAMXG00000011227	smarca1	99	90.061	Astyanax_mexicanus
ENSPPRG00000008929	SMARCA1	99	98.111	ENSBTAG00000002292	SMARCA1	99	98.190	Bos_taurus
ENSPPRG00000008929	SMARCA1	93	63.333	WBGene00002169	isw-1	97	63.333	Caenorhabditis_elegans
ENSPPRG00000008929	SMARCA1	100	98.488	ENSCJAG00000002868	SMARCA1	100	98.488	Callithrix_jacchus
ENSPPRG00000008929	SMARCA1	100	89.498	ENSCAFG00000018673	SMARCA1	100	89.684	Canis_familiaris
ENSPPRG00000008929	SMARCA1	100	99.622	ENSCAFG00020001751	SMARCA1	100	99.622	Canis_lupus_dingo
ENSPPRG00000008929	SMARCA1	100	98.209	ENSCHIG00000009837	SMARCA1	100	98.209	Capra_hircus
ENSPPRG00000008929	SMARCA1	95	98.518	ENSTSYG00000004240	SMARCA1	98	97.862	Carlito_syrichta
ENSPPRG00000008929	SMARCA1	100	95.019	ENSCPOG00000013601	SMARCA1	99	95.606	Cavia_porcellus
ENSPPRG00000008929	SMARCA1	100	95.463	ENSCCAG00000030817	SMARCA1	100	95.463	Cebus_capucinus
ENSPPRG00000008929	SMARCA1	100	98.598	ENSCATG00000015921	SMARCA1	100	98.598	Cercocebus_atys
ENSPPRG00000008929	SMARCA1	100	96.692	ENSCLAG00000002171	SMARCA1	100	96.692	Chinchilla_lanigera
ENSPPRG00000008929	SMARCA1	100	98.582	ENSCSAG00000008460	SMARCA1	100	98.582	Chlorocebus_sabaeus
ENSPPRG00000008929	SMARCA1	96	91.389	ENSCPBG00000001146	SMARCA1	95	92.807	Chrysemys_picta_bellii
ENSPPRG00000008929	SMARCA1	93	73.085	ENSCING00000004110	swi/snf	98	73.085	Ciona_intestinalis
ENSPPRG00000008929	SMARCA1	92	73.203	ENSCSAVG00000004620	-	100	74.165	Ciona_savignyi
ENSPPRG00000008929	SMARCA1	100	98.582	ENSCANG00000007183	SMARCA1	100	98.582	Colobus_angolensis_palliatus
ENSPPRG00000008929	SMARCA1	100	94.712	ENSCGRG00001010776	Smarca1	98	96.150	Cricetulus_griseus_chok1gshd
ENSPPRG00000008929	SMARCA1	93	96.061	ENSCGRG00000015301	Smarca1	98	96.158	Cricetulus_griseus_crigri
ENSPPRG00000008929	SMARCA1	92	83.811	ENSCSEG00000000328	smarca5	95	83.030	Cynoglossus_semilaevis
ENSPPRG00000008929	SMARCA1	93	83.198	ENSCVAG00000008668	smarca5	99	83.863	Cyprinodon_variegatus
ENSPPRG00000008929	SMARCA1	94	84.277	ENSDARG00000012776	smarca1	97	85.277	Danio_rerio
ENSPPRG00000008929	SMARCA1	94	82.710	ENSDARG00000052348	smarca5	95	82.710	Danio_rerio
ENSPPRG00000008929	SMARCA1	98	96.425	ENSDNOG00000004315	SMARCA1	99	96.425	Dasypus_novemcinctus
ENSPPRG00000008929	SMARCA1	98	96.132	ENSDORG00000009270	Smarca1	97	96.351	Dipodomys_ordii
ENSPPRG00000008929	SMARCA1	92	73.258	FBgn0011604	Iswi	98	72.512	Drosophila_melanogaster
ENSPPRG00000008929	SMARCA1	77	92.857	ENSETEG00000017426	SMARCA1	85	92.857	Echinops_telfairi
ENSPPRG00000008929	SMARCA1	93	80.797	ENSEBUG00000001239	smarca5	96	80.797	Eptatretus_burgeri
ENSPPRG00000008929	SMARCA1	97	93.462	ENSEASG00005008218	SMARCA1	100	93.939	Equus_asinus_asinus
ENSPPRG00000008929	SMARCA1	100	98.963	ENSECAG00000012106	SMARCA1	100	98.963	Equus_caballus
ENSPPRG00000008929	SMARCA1	75	98.013	ENSEEUG00000014927	SMARCA1	83	98.013	Erinaceus_europaeus
ENSPPRG00000008929	SMARCA1	95	85.828	ENSELUG00000010515	smarca1	99	86.105	Esox_lucius
ENSPPRG00000008929	SMARCA1	100	99.813	ENSFCAG00000018496	SMARCA1	100	99.813	Felis_catus
ENSPPRG00000008929	SMARCA1	86	93.100	ENSFALG00000000209	SMARCA1	98	93.202	Ficedula_albicollis
ENSPPRG00000008929	SMARCA1	93	98.083	ENSFDAG00000009818	SMARCA1	97	98.083	Fukomys_damarensis
ENSPPRG00000008929	SMARCA1	93	83.605	ENSFHEG00000007687	smarca5	94	83.030	Fundulus_heteroclitus
ENSPPRG00000008929	SMARCA1	94	90.927	ENSGALG00000008431	SMARCA1	97	92.733	Gallus_gallus
ENSPPRG00000008929	SMARCA1	93	83.605	ENSGAFG00000017731	smarca5	95	83.030	Gambusia_affinis
ENSPPRG00000008929	SMARCA1	92	93.519	ENSGAGG00000023575	SMARCA1	100	93.519	Gopherus_agassizii
ENSPPRG00000008929	SMARCA1	70	96.000	ENSGGOG00000012841	-	95	96.000	Gorilla_gorilla
ENSPPRG00000008929	SMARCA1	100	96.881	ENSHGLG00000003080	SMARCA1	100	96.881	Heterocephalus_glaber_female
ENSPPRG00000008929	SMARCA1	94	96.603	ENSHGLG00100001102	SMARCA1	100	96.603	Heterocephalus_glaber_male
ENSPPRG00000008929	SMARCA1	92	83.640	ENSHCOG00000005458	smarca5	95	82.929	Hippocampus_comes
ENSPPRG00000008929	SMARCA1	95	85.134	ENSIPUG00000016905	Smarca1	99	86.823	Ictalurus_punctatus
ENSPPRG00000008929	SMARCA1	98	79.215	ENSIPUG00000005229	SMARCA5	97	82.759	Ictalurus_punctatus
ENSPPRG00000008929	SMARCA1	100	98.015	ENSSTOG00000014524	SMARCA1	100	98.015	Ictidomys_tridecemlineatus
ENSPPRG00000008929	SMARCA1	100	95.857	ENSJJAG00000002593	Smarca1	100	95.857	Jaculus_jaculus
ENSPPRG00000008929	SMARCA1	92	83.845	ENSKMAG00000003777	smarca5	95	83.131	Kryptolebias_marmoratus
ENSPPRG00000008929	SMARCA1	88	83.996	ENSLBEG00000013295	SMARCA1	100	85.082	Labrus_bergylta
ENSPPRG00000008929	SMARCA1	94	82.727	ENSLBEG00000018112	smarca5	95	82.727	Labrus_bergylta
ENSPPRG00000008929	SMARCA1	95	89.841	ENSLACG00000016697	SMARCA1	99	89.841	Latimeria_chalumnae
ENSPPRG00000008929	SMARCA1	94	88.755	ENSLOCG00000014591	smarca1	97	88.755	Lepisosteus_oculatus
ENSPPRG00000008929	SMARCA1	95	96.620	ENSLAFG00000000896	SMARCA1	100	96.620	Loxodonta_africana
ENSPPRG00000008929	SMARCA1	100	98.677	ENSMFAG00000002117	SMARCA1	100	98.598	Macaca_fascicularis
ENSPPRG00000008929	SMARCA1	100	98.598	ENSMMUG00000008818	SMARCA1	100	98.598	Macaca_mulatta
ENSPPRG00000008929	SMARCA1	100	98.598	ENSMNEG00000041768	SMARCA1	100	98.598	Macaca_nemestrina
ENSPPRG00000008929	SMARCA1	100	98.582	ENSMLEG00000043198	SMARCA1	100	98.582	Mandrillus_leucophaeus
ENSPPRG00000008929	SMARCA1	93	83.809	ENSMAMG00000014294	smarca5	96	82.700	Mastacembelus_armatus
ENSPPRG00000008929	SMARCA1	96	81.354	ENSMZEG00005009369	smarca5	95	83.232	Maylandia_zebra
ENSPPRG00000008929	SMARCA1	95	91.133	ENSMGAG00000007042	SMARCA1	100	91.133	Meleagris_gallopavo
ENSPPRG00000008929	SMARCA1	98	96.466	ENSMAUG00000008133	Smarca1	99	96.466	Mesocricetus_auratus
ENSPPRG00000008929	SMARCA1	100	98.316	ENSMICG00000015768	SMARCA1	100	98.316	Microcebus_murinus
ENSPPRG00000008929	SMARCA1	100	95.673	ENSMOCG00000009464	Smarca1	100	95.673	Microtus_ochrogaster
ENSPPRG00000008929	SMARCA1	94	81.212	ENSMMOG00000005547	smarca5	99	81.212	Mola_mola
ENSPPRG00000008929	SMARCA1	98	89.826	ENSMODG00000013187	-	99	89.826	Monodelphis_domestica
ENSPPRG00000008929	SMARCA1	92	83.436	ENSMALG00000002081	smarca5	97	83.025	Monopterus_albus
ENSPPRG00000008929	SMARCA1	100	95.951	MGP_CAROLIEiJ_G0033034	Smarca1	100	95.951	Mus_caroli
ENSPPRG00000008929	SMARCA1	100	95.951	ENSMUSG00000031099	Smarca1	100	95.951	Mus_musculus
ENSPPRG00000008929	SMARCA1	100	95.951	MGP_PahariEiJ_G0031579	Smarca1	100	95.964	Mus_pahari
ENSPPRG00000008929	SMARCA1	100	96.045	MGP_SPRETEiJ_G0034192	Smarca1	100	96.045	Mus_spretus
ENSPPRG00000008929	SMARCA1	100	99.439	ENSMPUG00000017423	SMARCA1	95	99.439	Mustela_putorius_furo
ENSPPRG00000008929	SMARCA1	100	95.238	ENSMLUG00000029614	SMARCA1	100	95.238	Myotis_lucifugus
ENSPPRG00000008929	SMARCA1	98	96.944	ENSNGAG00000006492	Smarca1	99	96.944	Nannospalax_galili
ENSPPRG00000008929	SMARCA1	93	83.910	ENSNBRG00000004463	smarca5	99	83.333	Neolamprologus_brichardi
ENSPPRG00000008929	SMARCA1	100	97.944	ENSNLEG00000015179	SMARCA1	100	97.944	Nomascus_leucogenys
ENSPPRG00000008929	SMARCA1	89	82.038	ENSMEUG00000008819	SMARCA1	100	82.038	Notamacropus_eugenii
ENSPPRG00000008929	SMARCA1	98	96.750	ENSODEG00000012163	SMARCA1	99	96.750	Octodon_degus
ENSPPRG00000008929	SMARCA1	96	81.452	ENSONIG00000009993	smarca5	95	83.333	Oreochromis_niloticus
ENSPPRG00000008929	SMARCA1	92	93.621	ENSOANG00000002862	SMARCA1	100	93.621	Ornithorhynchus_anatinus
ENSPPRG00000008929	SMARCA1	100	96.503	ENSOCUG00000001047	SMARCA1	100	96.503	Oryctolagus_cuniculus
ENSPPRG00000008929	SMARCA1	92	83.742	ENSORLG00000021998	smarca5	95	83.030	Oryzias_latipes
ENSPPRG00000008929	SMARCA1	92	83.845	ENSORLG00020017679	smarca5	97	82.090	Oryzias_latipes_hni
ENSPPRG00000008929	SMARCA1	92	83.742	ENSORLG00015017210	smarca5	95	82.929	Oryzias_latipes_hsok
ENSPPRG00000008929	SMARCA1	92	83.742	ENSOMEG00000000086	smarca5	95	82.929	Oryzias_melastigma
ENSPPRG00000008929	SMARCA1	98	98.281	ENSOGAG00000004399	SMARCA1	99	98.281	Otolemur_garnettii
ENSPPRG00000008929	SMARCA1	95	97.828	ENSOARG00000014638	SMARCA1	100	99.286	Ovis_aries
ENSPPRG00000008929	SMARCA1	100	98.677	ENSPPAG00000034647	SMARCA1	100	98.677	Pan_paniscus
ENSPPRG00000008929	SMARCA1	95	98.035	ENSPTIG00000000915	SMARCA1	98	98.035	Panthera_tigris_altaica
ENSPPRG00000008929	SMARCA1	100	98.677	ENSPTRG00000049876	SMARCA1	100	98.598	Pan_troglodytes
ENSPPRG00000008929	SMARCA1	100	98.677	ENSPANG00000003871	SMARCA1	100	98.677	Papio_anubis
ENSPPRG00000008929	SMARCA1	89	86.906	ENSPKIG00000013411	smarca1	98	86.722	Paramormyrops_kingsleyae
ENSPPRG00000008929	SMARCA1	95	91.905	ENSPSIG00000010101	SMARCA1	100	93.210	Pelodiscus_sinensis
ENSPPRG00000008929	SMARCA1	98	97.039	ENSPEMG00000017503	Smarca1	99	97.039	Peromyscus_maniculatus_bairdii
ENSPPRG00000008929	SMARCA1	95	92.108	ENSPCIG00000015460	SMARCA1	98	92.108	Phascolarctos_cinereus
ENSPPRG00000008929	SMARCA1	92	83.845	ENSPFOG00000007649	smarca5	95	83.030	Poecilia_formosa
ENSPPRG00000008929	SMARCA1	92	83.845	ENSPLAG00000003363	smarca5	95	83.030	Poecilia_latipinna
ENSPPRG00000008929	SMARCA1	92	83.742	ENSPMEG00000019849	smarca5	95	82.929	Poecilia_mexicana
ENSPPRG00000008929	SMARCA1	92	83.742	ENSPREG00000023250	smarca5	95	82.929	Poecilia_reticulata
ENSPPRG00000008929	SMARCA1	100	94.860	ENSPPYG00000020703	SMARCA1	100	94.860	Pongo_abelii
ENSPPRG00000008929	SMARCA1	77	89.189	ENSPCOG00000020722	SMARCA1	94	93.539	Propithecus_coquereli
ENSPPRG00000008929	SMARCA1	92	98.198	ENSPVAG00000003805	SMARCA1	94	98.198	Pteropus_vampyrus
ENSPPRG00000008929	SMARCA1	56	84.658	ENSPNYG00000012299	smarca5	92	83.467	Pundamilia_nyererei
ENSPPRG00000008929	SMARCA1	100	96.689	ENSRNOG00000003762	Smarca1	100	96.689	Rattus_norvegicus
ENSPPRG00000008929	SMARCA1	100	98.582	ENSRROG00000034167	SMARCA1	100	98.582	Rhinopithecus_roxellana
ENSPPRG00000008929	SMARCA1	96	97.289	ENSSBOG00000020641	SMARCA1	100	98.980	Saimiri_boliviensis_boliviensis
ENSPPRG00000008929	SMARCA1	92	86.536	ENSSHAG00000013518	SMARCA1	99	86.536	Sarcophilus_harrisii
ENSPPRG00000008929	SMARCA1	98	85.397	ENSSFOG00015009043	smarca1	99	85.397	Scleropages_formosus
ENSPPRG00000008929	SMARCA1	96	81.398	ENSSFOG00015016794	smarca5	100	83.711	Scleropages_formosus
ENSPPRG00000008929	SMARCA1	93	82.573	ENSSMAG00000004801	smarca5	95	82.573	Scophthalmus_maximus
ENSPPRG00000008929	SMARCA1	93	83.299	ENSSDUG00000020690	smarca5	97	82.136	Seriola_dumerili
ENSPPRG00000008929	SMARCA1	93	83.299	ENSSLDG00000025190	smarca5	97	82.136	Seriola_lalandi_dorsalis
ENSPPRG00000008929	SMARCA1	85	90.826	ENSSARG00000000842	SMARCA1	92	90.826	Sorex_araneus
ENSPPRG00000008929	SMARCA1	95	90.339	ENSSPUG00000000590	SMARCA1	95	92.127	Sphenodon_punctatus
ENSPPRG00000008929	SMARCA1	93	83.401	ENSSPAG00000002894	smarca5	97	84.245	Stegastes_partitus
ENSPPRG00000008929	SMARCA1	98	98.748	ENSSSCG00000012649	SMARCA1	99	98.748	Sus_scrofa
ENSPPRG00000008929	SMARCA1	93	92.566	ENSTGUG00000003899	-	100	92.566	Taeniopygia_guttata
ENSPPRG00000008929	SMARCA1	93	83.503	ENSTRUG00000014094	smarca5	95	82.929	Takifugu_rubripes
ENSPPRG00000008929	SMARCA1	92	82.787	ENSTNIG00000017717	smarca5	94	81.919	Tetraodon_nigroviridis
ENSPPRG00000008929	SMARCA1	93	91.304	ENSTBEG00000014973	SMARCA1	99	91.304	Tupaia_belangeri
ENSPPRG00000008929	SMARCA1	92	96.033	ENSTTRG00000006168	SMARCA1	99	96.033	Tursiops_truncatus
ENSPPRG00000008929	SMARCA1	100	99.244	ENSUAMG00000020201	SMARCA1	100	99.244	Ursus_americanus
ENSPPRG00000008929	SMARCA1	95	94.789	ENSUMAG00000004073	SMARCA1	97	99.757	Ursus_maritimus
ENSPPRG00000008929	SMARCA1	77	99.675	ENSVPAG00000010492	-	85	99.675	Vicugna_pacos
ENSPPRG00000008929	SMARCA1	95	99.800	ENSVVUG00000008878	SMARCA1	99	99.800	Vulpes_vulpes
ENSPPRG00000008929	SMARCA1	94	89.548	ENSXETG00000001526	smarca1	99	89.548	Xenopus_tropicalis
ENSPPRG00000008929	SMARCA1	93	83.503	ENSXCOG00000011170	smarca5	98	82.929	Xiphophorus_couchianus
ENSPPRG00000008929	SMARCA1	93	83.503	ENSXMAG00000009678	smarca5	97	85.088	Xiphophorus_maculatus