EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPRG00000012180 (Gene tree)
Gene ID: 109255406
Gene Symbol: A1CF
Alias: -
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Panthera_pardus
Status: putative
Strand: Minus strand
Length: 79139 bases
Position: chrKV860401.1:2640150-2719288
Accession: 109255406
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPRP00000021271	DND1_DSRM	PF14709.7	1.1e-24	1	1
ENSPPRP00000021266	DND1_DSRM	PF14709.7	1.2e-24	1	1
ENSPPRP00000021271	RRM_1	PF00076.22	1.3e-39	1	3
ENSPPRP00000021271	RRM_1	PF00076.22	1.3e-39	2	3
ENSPPRP00000021271	RRM_1	PF00076.22	1.3e-39	3	3
ENSPPRP00000021266	RRM_1	PF00076.22	1.4e-39	1	3
ENSPPRP00000021266	RRM_1	PF00076.22	1.4e-39	2	3
ENSPPRP00000021266	RRM_1	PF00076.22	1.4e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPRT00000019747	A1CF-202	1932	XM_019430051	ENSPPRP00000021271	592 (aa)	XP_019285596	UPI0007663096
ENSPPRT00000019725	A1CF-201	1797	-	ENSPPRP00000021266	598 (aa)	-	-

Gene Model

Click here to download ENSPPRG00000012180's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPRG00000012180's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPRG00000012180	A1CF	74	69.206	ENSPPRG00000009416	RBM46	88	69.206
ENSPPRG00000012180	A1CF	52	52.104	ENSPPRG00000011141	SYNCRIP	57	51.077
ENSPPRG00000012180	A1CF	76	58.261	ENSPPRG00000012873	RBM47	69	67.816

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPRG00000012180	A1CF	100	94.781	ENSG00000148584	A1CF	100	96.517	Homo_sapiens
ENSPPRG00000012180	A1CF	100	73.211	ENSAPOG00000008259	a1cf	100	72.546	Acanthochromis_polyacanthus
ENSPPRG00000012180	A1CF	100	96.453	ENSAMEG00000000523	A1CF	100	96.453	Ailuropoda_melanoleuca
ENSPPRG00000012180	A1CF	100	74.878	ENSACIG00000008632	a1cf	100	75.530	Amphilophus_citrinellus
ENSPPRG00000012180	A1CF	100	73.727	ENSAOCG00000023744	a1cf	96	83.478	Amphiprion_ocellaris
ENSPPRG00000012180	A1CF	100	74.713	ENSAPEG00000009537	a1cf	100	74.713	Amphiprion_percula
ENSPPRG00000012180	A1CF	100	75.081	ENSATEG00000013720	a1cf	100	75.902	Anabas_testudineus
ENSPPRG00000012180	A1CF	100	88.364	ENSAPLG00000002964	A1CF	100	88.196	Anas_platyrhynchos
ENSPPRG00000012180	A1CF	100	82.631	ENSACAG00000015269	A1CF	100	81.619	Anolis_carolinensis
ENSPPRG00000012180	A1CF	100	93.603	ENSANAG00000019974	A1CF	100	93.434	Aotus_nancymaae
ENSPPRG00000012180	A1CF	100	73.235	ENSACLG00000017428	a1cf	100	74.713	Astatotilapia_calliptera
ENSPPRG00000012180	A1CF	100	74.876	ENSAMXG00000018180	a1cf	100	74.050	Astyanax_mexicanus
ENSPPRG00000012180	A1CF	100	93.109	ENSBTAG00000021195	A1CF	100	92.941	Bos_taurus
ENSPPRG00000012180	A1CF	100	95.286	ENSCJAG00000005045	A1CF	100	95.118	Callithrix_jacchus
ENSPPRG00000012180	A1CF	100	97.128	ENSCAFG00000015581	A1CF	100	97.128	Canis_familiaris
ENSPPRG00000012180	A1CF	100	97.128	ENSCAFG00020026421	A1CF	100	97.128	Canis_lupus_dingo
ENSPPRG00000012180	A1CF	100	93.782	ENSCHIG00000020411	A1CF	100	93.613	Capra_hircus
ENSPPRG00000012180	A1CF	100	90.803	ENSTSYG00000001755	A1CF	100	93.739	Carlito_syrichta
ENSPPRG00000012180	A1CF	100	81.288	ENSCAPG00000017386	A1CF	90	92.308	Cavia_aperea
ENSPPRG00000012180	A1CF	100	93.434	ENSCPOG00000009807	A1CF	100	93.434	Cavia_porcellus
ENSPPRG00000012180	A1CF	100	95.447	ENSCCAG00000018168	A1CF	100	95.278	Cebus_capucinus
ENSPPRG00000012180	A1CF	100	93.750	ENSCATG00000043715	A1CF	100	93.750	Cercocebus_atys
ENSPPRG00000012180	A1CF	100	93.456	ENSCLAG00000010424	A1CF	100	92.785	Chinchilla_lanigera
ENSPPRG00000012180	A1CF	100	94.932	ENSCSAG00000007032	A1CF	100	94.932	Chlorocebus_sabaeus
ENSPPRG00000012180	A1CF	100	88.723	ENSCHOG00000009089	A1CF	100	87.894	Choloepus_hoffmanni
ENSPPRG00000012180	A1CF	100	87.858	ENSCPBG00000026464	A1CF	100	87.521	Chrysemys_picta_bellii
ENSPPRG00000012180	A1CF	100	95.101	ENSCANG00000038032	A1CF	100	95.101	Colobus_angolensis_palliatus
ENSPPRG00000012180	A1CF	100	91.933	ENSCGRG00001017413	A1cf	100	91.765	Cricetulus_griseus_chok1gshd
ENSPPRG00000012180	A1CF	100	91.261	ENSCGRG00000017332	A1cf	100	92.101	Cricetulus_griseus_crigri
ENSPPRG00000012180	A1CF	100	74.959	ENSCSEG00000002361	a1cf	100	75.456	Cynoglossus_semilaevis
ENSPPRG00000012180	A1CF	100	74.430	ENSCVAG00000010520	a1cf	100	75.574	Cyprinodon_variegatus
ENSPPRG00000012180	A1CF	100	77.759	ENSDARG00000002968	a1cf	100	79.097	Danio_rerio
ENSPPRG00000012180	A1CF	100	93.277	ENSDNOG00000002829	A1CF	100	93.277	Dasypus_novemcinctus
ENSPPRG00000012180	A1CF	81	90.942	ENSETEG00000012527	A1CF	81	90.942	Echinops_telfairi
ENSPPRG00000012180	A1CF	100	95.980	ENSEASG00005012924	A1CF	100	95.980	Equus_asinus_asinus
ENSPPRG00000012180	A1CF	100	95.645	ENSECAG00000010424	A1CF	100	95.645	Equus_caballus
ENSPPRG00000012180	A1CF	78	80.043	ENSEEUG00000000013	A1CF	97	80.444	Erinaceus_europaeus
ENSPPRG00000012180	A1CF	100	78.763	ENSELUG00000003159	a1cf	100	79.599	Esox_lucius
ENSPPRG00000012180	A1CF	100	98.997	ENSFCAG00000011179	A1CF	100	98.997	Felis_catus
ENSPPRG00000012180	A1CF	100	86.509	ENSFALG00000013183	A1CF	100	86.172	Ficedula_albicollis
ENSPPRG00000012180	A1CF	100	91.429	ENSFDAG00000019371	A1CF	100	90.756	Fukomys_damarensis
ENSPPRG00000012180	A1CF	100	70.033	ENSFHEG00000019652	a1cf	96	82.031	Fundulus_heteroclitus
ENSPPRG00000012180	A1CF	100	72.066	ENSGMOG00000018943	a1cf	100	71.476	Gadus_morhua
ENSPPRG00000012180	A1CF	95	88.612	ENSGALG00000003765	A1CF	97	88.256	Gallus_gallus
ENSPPRG00000012180	A1CF	100	69.572	ENSGAFG00000014868	a1cf	100	70.066	Gambusia_affinis
ENSPPRG00000012180	A1CF	100	73.849	ENSGACG00000010241	a1cf	100	74.098	Gasterosteus_aculeatus
ENSPPRG00000012180	A1CF	94	87.679	ENSGAGG00000016508	A1CF	97	87.321	Gopherus_agassizii
ENSPPRG00000012180	A1CF	100	94.949	ENSGGOG00000009670	A1CF	100	94.444	Gorilla_gorilla
ENSPPRG00000012180	A1CF	100	74.062	ENSHBUG00000021959	a1cf	100	75.204	Haplochromis_burtoni
ENSPPRG00000012180	A1CF	100	93.613	ENSHGLG00000008955	A1CF	100	92.941	Heterocephalus_glaber_female
ENSPPRG00000012180	A1CF	100	92.941	ENSHGLG00100000518	A1CF	100	92.269	Heterocephalus_glaber_male
ENSPPRG00000012180	A1CF	100	70.752	ENSHCOG00000017669	a1cf	100	72.594	Hippocampus_comes
ENSPPRG00000012180	A1CF	90	82.463	ENSIPUG00000010367	a1cf	95	82.927	Ictalurus_punctatus
ENSPPRG00000012180	A1CF	100	76.585	ENSKMAG00000006568	a1cf	100	76.985	Kryptolebias_marmoratus
ENSPPRG00000012180	A1CF	99	74.795	ENSLBEG00000020994	a1cf	98	75.783	Labrus_bergylta
ENSPPRG00000012180	A1CF	100	81.040	ENSLACG00000008061	A1CF	100	80.872	Latimeria_chalumnae
ENSPPRG00000012180	A1CF	100	82.412	ENSLOCG00000006302	a1cf	100	81.910	Lepisosteus_oculatus
ENSPPRG00000012180	A1CF	100	93.613	ENSLAFG00000015462	A1CF	100	93.277	Loxodonta_africana
ENSPPRG00000012180	A1CF	100	93.919	ENSMFAG00000035948	A1CF	100	93.919	Macaca_fascicularis
ENSPPRG00000012180	A1CF	100	93.919	ENSMMUG00000007077	A1CF	100	93.919	Macaca_mulatta
ENSPPRG00000012180	A1CF	100	93.581	ENSMNEG00000031454	A1CF	100	93.581	Macaca_nemestrina
ENSPPRG00000012180	A1CF	100	95.101	ENSMLEG00000037223	A1CF	100	95.101	Mandrillus_leucophaeus
ENSPPRG00000012180	A1CF	100	73.322	ENSMAMG00000010402	a1cf	100	74.510	Mastacembelus_armatus
ENSPPRG00000012180	A1CF	100	76.127	ENSMZEG00005013245	a1cf	100	76.884	Maylandia_zebra
ENSPPRG00000012180	A1CF	100	88.721	ENSMGAG00000001507	A1CF	100	88.384	Meleagris_gallopavo
ENSPPRG00000012180	A1CF	100	91.429	ENSMAUG00000007422	A1cf	100	91.261	Mesocricetus_auratus
ENSPPRG00000012180	A1CF	100	92.140	ENSMICG00000003377	A1CF	100	91.973	Microcebus_murinus
ENSPPRG00000012180	A1CF	100	91.933	ENSMOCG00000021536	A1cf	100	91.765	Microtus_ochrogaster
ENSPPRG00000012180	A1CF	100	67.159	ENSMMOG00000009422	a1cf	100	69.243	Mola_mola
ENSPPRG00000012180	A1CF	92	88.624	ENSMODG00000016478	A1CF	97	88.847	Monodelphis_domestica
ENSPPRG00000012180	A1CF	100	73.199	ENSMALG00000012992	a1cf	100	72.864	Monopterus_albus
ENSPPRG00000012180	A1CF	100	90.924	MGP_CAROLIEiJ_G0022873	A1cf	100	90.588	Mus_caroli
ENSPPRG00000012180	A1CF	100	90.924	ENSMUSG00000052595	A1cf	99	93.947	Mus_musculus
ENSPPRG00000012180	A1CF	100	90.924	MGP_PahariEiJ_G0014366	A1cf	100	89.748	Mus_pahari
ENSPPRG00000012180	A1CF	100	90.756	MGP_SPRETEiJ_G0023792	A1cf	100	90.420	Mus_spretus
ENSPPRG00000012180	A1CF	100	89.865	ENSMPUG00000016971	A1CF	100	89.865	Mustela_putorius_furo
ENSPPRG00000012180	A1CF	100	93.782	ENSMLUG00000016071	A1CF	100	93.782	Myotis_lucifugus
ENSPPRG00000012180	A1CF	100	92.941	ENSNGAG00000015136	A1cf	100	92.941	Nannospalax_galili
ENSPPRG00000012180	A1CF	100	74.388	ENSNBRG00000001712	a1cf	100	75.530	Neolamprologus_brichardi
ENSPPRG00000012180	A1CF	100	95.294	ENSNLEG00000012028	A1CF	100	94.622	Nomascus_leucogenys
ENSPPRG00000012180	A1CF	94	88.571	ENSMEUG00000015909	A1CF	100	88.214	Notamacropus_eugenii
ENSPPRG00000012180	A1CF	89	83.048	ENSOPRG00000010667	A1CF	97	83.144	Ochotona_princeps
ENSPPRG00000012180	A1CF	100	74.551	ENSONIG00000019105	a1cf	100	76.020	Oreochromis_niloticus
ENSPPRG00000012180	A1CF	78	86.938	ENSOANG00000007360	A1CF	99	86.938	Ornithorhynchus_anatinus
ENSPPRG00000012180	A1CF	100	91.275	ENSOCUG00000011587	A1CF	100	91.611	Oryctolagus_cuniculus
ENSPPRG00000012180	A1CF	100	74.056	ENSORLG00000013342	a1cf	100	74.220	Oryzias_latipes
ENSPPRG00000012180	A1CF	100	75.450	ENSORLG00020000586	a1cf	100	75.000	Oryzias_latipes_hni
ENSPPRG00000012180	A1CF	100	75.286	ENSORLG00015018569	a1cf	100	74.837	Oryzias_latipes_hsok
ENSPPRG00000012180	A1CF	100	74.304	ENSOMEG00000013531	a1cf	100	73.159	Oryzias_melastigma
ENSPPRG00000012180	A1CF	100	93.243	ENSOGAG00000012884	A1CF	100	93.243	Otolemur_garnettii
ENSPPRG00000012180	A1CF	100	94.286	ENSOARG00000013695	A1CF	100	93.950	Ovis_aries
ENSPPRG00000012180	A1CF	100	91.196	ENSPPAG00000028115	A1CF	100	96.356	Pan_paniscus
ENSPPRG00000012180	A1CF	100	100.000	ENSPTIG00000021223	A1CF	100	100.000	Panthera_tigris_altaica
ENSPPRG00000012180	A1CF	100	94.781	ENSPTRG00000002508	A1CF	100	94.276	Pan_troglodytes
ENSPPRG00000012180	A1CF	100	93.919	ENSPANG00000021988	A1CF	100	93.919	Papio_anubis
ENSPPRG00000012180	A1CF	100	79.833	ENSPKIG00000025176	a1cf	100	79.599	Paramormyrops_kingsleyae
ENSPPRG00000012180	A1CF	100	86.172	ENSPSIG00000010318	A1CF	100	85.835	Pelodiscus_sinensis
ENSPPRG00000012180	A1CF	89	71.238	ENSPMGG00000013359	a1cf	99	67.410	Periophthalmus_magnuspinnatus
ENSPPRG00000012180	A1CF	100	92.605	ENSPEMG00000015021	A1cf	100	91.765	Peromyscus_maniculatus_bairdii
ENSPPRG00000012180	A1CF	100	88.533	ENSPCIG00000002175	A1CF	100	88.196	Phascolarctos_cinereus
ENSPPRG00000012180	A1CF	100	75.733	ENSPFOG00000006683	a1cf	100	76.623	Poecilia_formosa
ENSPPRG00000012180	A1CF	100	75.570	ENSPFOG00000007437	-	100	76.461	Poecilia_formosa
ENSPPRG00000012180	A1CF	100	74.430	ENSPLAG00000001210	-	100	75.325	Poecilia_latipinna
ENSPPRG00000012180	A1CF	100	74.430	ENSPLAG00000000026	a1cf	100	75.325	Poecilia_latipinna
ENSPPRG00000012180	A1CF	100	68.137	ENSPMEG00000015529	-	100	69.281	Poecilia_mexicana
ENSPPRG00000012180	A1CF	100	66.993	ENSPMEG00000000921	a1cf	100	68.137	Poecilia_mexicana
ENSPPRG00000012180	A1CF	100	75.570	ENSPREG00000016298	a1cf	100	76.547	Poecilia_reticulata
ENSPPRG00000012180	A1CF	100	93.782	ENSPPYG00000002819	A1CF	100	93.109	Pongo_abelii
ENSPPRG00000012180	A1CF	79	72.669	ENSPCAG00000006463	A1CF	70	89.362	Procavia_capensis
ENSPPRG00000012180	A1CF	100	93.960	ENSPCOG00000024172	A1CF	100	93.624	Propithecus_coquereli
ENSPPRG00000012180	A1CF	100	75.367	ENSPNYG00000017944	a1cf	100	76.509	Pundamilia_nyererei
ENSPPRG00000012180	A1CF	100	79.636	ENSPNAG00000007704	a1cf	100	78.974	Pygocentrus_nattereri
ENSPPRG00000012180	A1CF	100	89.916	ENSRNOG00000033195	A1cf	100	89.580	Rattus_norvegicus
ENSPPRG00000012180	A1CF	100	88.721	ENSRBIG00000042892	A1CF	100	91.929	Rhinopithecus_bieti
ENSPPRG00000012180	A1CF	100	95.270	ENSRROG00000041398	A1CF	100	95.270	Rhinopithecus_roxellana
ENSPPRG00000012180	A1CF	100	94.958	ENSSBOG00000021930	A1CF	100	94.286	Saimiri_boliviensis_boliviensis
ENSPPRG00000012180	A1CF	100	89.207	ENSSHAG00000005096	A1CF	100	89.207	Sarcophilus_harrisii
ENSPPRG00000012180	A1CF	100	78.773	ENSSFOG00015011774	a1cf	100	78.607	Scleropages_formosus
ENSPPRG00000012180	A1CF	100	74.593	ENSSMAG00000013271	a1cf	100	74.267	Scophthalmus_maximus
ENSPPRG00000012180	A1CF	100	75.456	ENSSDUG00000013930	a1cf	100	76.206	Seriola_dumerili
ENSPPRG00000012180	A1CF	100	70.132	ENSSLDG00000004290	a1cf	100	69.868	Seriola_lalandi_dorsalis
ENSPPRG00000012180	A1CF	95	82.867	ENSSARG00000005940	A1CF	97	82.343	Sorex_araneus
ENSPPRG00000012180	A1CF	99	83.108	ENSSPUG00000006797	A1CF	99	82.770	Sphenodon_punctatus
ENSPPRG00000012180	A1CF	100	94.622	ENSSSCG00000010431	A1CF	100	94.118	Sus_scrofa
ENSPPRG00000012180	A1CF	100	87.667	ENSTGUG00000005090	A1CF	100	87.291	Taeniopygia_guttata
ENSPPRG00000012180	A1CF	100	74.225	ENSTRUG00000001982	a1cf	100	73.453	Takifugu_rubripes
ENSPPRG00000012180	A1CF	100	74.309	ENSTNIG00000003580	a1cf	100	73.659	Tetraodon_nigroviridis
ENSPPRG00000012180	A1CF	100	84.884	ENSTTRG00000013190	A1CF	100	84.718	Tursiops_truncatus
ENSPPRG00000012180	A1CF	100	95.101	ENSUAMG00000020065	A1CF	100	95.101	Ursus_americanus
ENSPPRG00000012180	A1CF	100	95.946	ENSUMAG00000011162	A1CF	100	95.777	Ursus_maritimus
ENSPPRG00000012180	A1CF	87	88.868	ENSVPAG00000006130	A1CF	86	88.676	Vicugna_pacos
ENSPPRG00000012180	A1CF	100	95.608	ENSVVUG00000002504	A1CF	100	95.608	Vulpes_vulpes
ENSPPRG00000012180	A1CF	100	78.894	ENSXETG00000006611	a1cf	100	78.224	Xenopus_tropicalis
ENSPPRG00000012180	A1CF	100	75.574	ENSXCOG00000003302	a1cf	100	76.230	Xiphophorus_couchianus
ENSPPRG00000012180	A1CF	100	76.721	ENSXMAG00000016703	a1cf	100	77.377	Xiphophorus_maculatus