EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPRG00000012182 (Gene tree)
Gene ID: 109276062
Gene Symbol: APOBEC1
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Panthera_pardus
Status: putative
Strand: Minus strand
Length: 9842 bases
Position: chrKV860317.1:610290-620131
Accession: 109276062
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPRP00000021349	APOBEC_N	PF08210.11	2.3e-28	1	1
ENSPPRP00000021349	APOBEC_C	PF05240.14	1.2e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPRT00000019815	APOBEC1-201	908	XM_019464585	ENSPPRP00000021349	236 (aa)	XP_019320130	UPI000904BC84

Gene Model

Click here to download ENSPPRG00000012182's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPRG00000012182's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPRG00000012182	APOBEC1	56	34.848	ENSPPRG00000003941	-	68	34.848

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPRG00000012182	APOBEC1	100	80.932	ENSG00000111701	APOBEC1	100	80.932	Homo_sapiens
ENSPPRG00000012182	APOBEC1	99	85.837	ENSAMEG00000007098	APOBEC1	99	85.837	Ailuropoda_melanoleuca
ENSPPRG00000012182	APOBEC1	78	40.541	ENSACAG00000028578	-	98	40.541	Anolis_carolinensis
ENSPPRG00000012182	APOBEC1	100	79.237	ENSANAG00000027743	APOBEC1	95	79.237	Aotus_nancymaae
ENSPPRG00000012182	APOBEC1	100	74.153	ENSBTAG00000014683	APOBEC1	100	74.153	Bos_taurus
ENSPPRG00000012182	APOBEC1	94	80.090	ENSCJAG00000005398	APOBEC1	100	80.090	Callithrix_jacchus
ENSPPRG00000012182	APOBEC1	100	85.169	ENSCAFG00000013901	APOBEC1	100	85.169	Canis_familiaris
ENSPPRG00000012182	APOBEC1	96	83.186	ENSCAFG00020003511	APOBEC1	95	83.186	Canis_lupus_dingo
ENSPPRG00000012182	APOBEC1	98	74.892	ENSCHIG00000011898	APOBEC1	96	74.892	Capra_hircus
ENSPPRG00000012182	APOBEC1	59	84.173	ENSTSYG00000029141	APOBEC1	99	84.173	Carlito_syrichta
ENSPPRG00000012182	APOBEC1	91	68.692	ENSCAPG00000015882	-	99	68.692	Cavia_aperea
ENSPPRG00000012182	APOBEC1	99	67.234	ENSCPOG00000033068	APOBEC1	99	67.234	Cavia_porcellus
ENSPPRG00000012182	APOBEC1	100	78.814	ENSCCAG00000022258	APOBEC1	100	78.814	Cebus_capucinus
ENSPPRG00000012182	APOBEC1	100	82.203	ENSCATG00000021613	APOBEC1	95	82.203	Cercocebus_atys
ENSPPRG00000012182	APOBEC1	97	70.742	ENSCLAG00000014645	APOBEC1	99	70.742	Chinchilla_lanigera
ENSPPRG00000012182	APOBEC1	81	83.158	ENSCSAG00000009817	APOBEC1	99	83.158	Chlorocebus_sabaeus
ENSPPRG00000012182	APOBEC1	83	47.449	ENSCPBG00000014329	-	54	47.449	Chrysemys_picta_bellii
ENSPPRG00000012182	APOBEC1	83	44.444	ENSCPBG00000014328	-	86	44.444	Chrysemys_picta_bellii
ENSPPRG00000012182	APOBEC1	87	43.961	ENSCPBG00000014327	-	82	39.336	Chrysemys_picta_bellii
ENSPPRG00000012182	APOBEC1	77	45.455	ENSCPBG00000017398	-	82	45.455	Chrysemys_picta_bellii
ENSPPRG00000012182	APOBEC1	78	48.128	ENSCPBG00000014335	-	76	48.128	Chrysemys_picta_bellii
ENSPPRG00000012182	APOBEC1	98	40.426	ENSCPBG00000014331	-	94	40.426	Chrysemys_picta_bellii
ENSPPRG00000012182	APOBEC1	97	82.174	ENSCANG00000038359	APOBEC1	100	82.174	Colobus_angolensis_palliatus
ENSPPRG00000012182	APOBEC1	97	71.179	ENSCGRG00001011130	Apobec1	100	71.179	Cricetulus_griseus_chok1gshd
ENSPPRG00000012182	APOBEC1	97	71.179	ENSCGRG00000008644	Apobec1	100	71.179	Cricetulus_griseus_crigri
ENSPPRG00000012182	APOBEC1	100	80.085	ENSDNOG00000010926	APOBEC1	100	80.085	Dasypus_novemcinctus
ENSPPRG00000012182	APOBEC1	90	65.888	ENSDORG00000023717	Apobec1	100	65.888	Dipodomys_ordii
ENSPPRG00000012182	APOBEC1	99	77.447	ENSETEG00000004867	APOBEC1	99	77.447	Echinops_telfairi
ENSPPRG00000012182	APOBEC1	99	84.549	ENSEASG00005015951	APOBEC1	98	84.549	Equus_asinus_asinus
ENSPPRG00000012182	APOBEC1	81	85.263	ENSECAG00000017163	APOBEC1	99	85.263	Equus_caballus
ENSPPRG00000012182	APOBEC1	86	55.882	ENSEEUG00000007530	-	97	55.882	Erinaceus_europaeus
ENSPPRG00000012182	APOBEC1	91	68.519	ENSEEUG00000009112	-	96	68.519	Erinaceus_europaeus
ENSPPRG00000012182	APOBEC1	100	99.576	ENSFCAG00000009350	APOBEC1	100	99.576	Felis_catus
ENSPPRG00000012182	APOBEC1	60	49.296	ENSFALG00000007257	-	72	49.296	Ficedula_albicollis
ENSPPRG00000012182	APOBEC1	88	59.420	ENSFDAG00000018470	APOBEC1	99	59.420	Fukomys_damarensis
ENSPPRG00000012182	APOBEC1	72	46.199	ENSGAGG00000006624	-	62	46.199	Gopherus_agassizii
ENSPPRG00000012182	APOBEC1	92	48.402	ENSGAGG00000011837	-	90	51.124	Gopherus_agassizii
ENSPPRG00000012182	APOBEC1	76	42.077	ENSGAGG00000021745	-	68	42.077	Gopherus_agassizii
ENSPPRG00000012182	APOBEC1	72	47.977	ENSGAGG00000004947	-	82	53.125	Gopherus_agassizii
ENSPPRG00000012182	APOBEC1	81	44.041	ENSGAGG00000021744	-	75	44.041	Gopherus_agassizii
ENSPPRG00000012182	APOBEC1	99	64.255	ENSHGLG00000001495	APOBEC1	99	64.255	Heterocephalus_glaber_female
ENSPPRG00000012182	APOBEC1	99	62.979	ENSHGLG00100002187	APOBEC1	99	62.979	Heterocephalus_glaber_male
ENSPPRG00000012182	APOBEC1	91	65.116	ENSSTOG00000021971	APOBEC1	100	82.653	Ictidomys_tridecemlineatus
ENSPPRG00000012182	APOBEC1	97	76.419	ENSJJAG00000022108	Apobec1	100	76.419	Jaculus_jaculus
ENSPPRG00000012182	APOBEC1	94	80.269	ENSLAFG00000030837	APOBEC1	100	80.269	Loxodonta_africana
ENSPPRG00000012182	APOBEC1	100	82.627	ENSMFAG00000000277	APOBEC1	100	82.627	Macaca_fascicularis
ENSPPRG00000012182	APOBEC1	100	82.203	ENSMNEG00000029670	APOBEC1	100	82.203	Macaca_nemestrina
ENSPPRG00000012182	APOBEC1	100	82.203	ENSMLEG00000036301	APOBEC1	100	82.203	Mandrillus_leucophaeus
ENSPPRG00000012182	APOBEC1	92	71.296	ENSMAUG00000022167	Apobec1	97	71.296	Mesocricetus_auratus
ENSPPRG00000012182	APOBEC1	100	82.627	ENSMICG00000043645	APOBEC1	100	82.627	Microcebus_murinus
ENSPPRG00000012182	APOBEC1	100	68.220	ENSMODG00000018004	APOBEC1	100	68.220	Monodelphis_domestica
ENSPPRG00000012182	APOBEC1	97	71.491	ENSMUSG00000040613	Apobec1	99	71.491	Mus_musculus
ENSPPRG00000012182	APOBEC1	97	68.860	MGP_PahariEiJ_G0022580	-	99	68.860	Mus_pahari
ENSPPRG00000012182	APOBEC1	97	71.491	MGP_SPRETEiJ_G0029857	Apobec1	99	71.491	Mus_spretus
ENSPPRG00000012182	APOBEC1	100	87.288	ENSMPUG00000017532	APOBEC1	100	87.288	Mustela_putorius_furo
ENSPPRG00000012182	APOBEC1	97	73.362	ENSNGAG00000022607	Apobec1	100	73.362	Nannospalax_galili
ENSPPRG00000012182	APOBEC1	100	81.356	ENSNLEG00000005342	APOBEC1	100	81.356	Nomascus_leucogenys
ENSPPRG00000012182	APOBEC1	100	67.797	ENSMEUG00000013406	APOBEC1	100	67.797	Notamacropus_eugenii
ENSPPRG00000012182	APOBEC1	77	61.878	ENSOPRG00000009508	-	100	61.878	Ochotona_princeps
ENSPPRG00000012182	APOBEC1	100	73.305	ENSOCUG00000025736	APOBEC1	88	73.305	Oryctolagus_cuniculus
ENSPPRG00000012182	APOBEC1	99	80.687	ENSOGAG00000026415	APOBEC1	99	80.687	Otolemur_garnettii
ENSPPRG00000012182	APOBEC1	100	75.000	ENSOARG00000002072	APOBEC1	99	75.000	Ovis_aries
ENSPPRG00000012182	APOBEC1	99	74.249	ENSPPAG00000027657	APOBEC1	99	74.249	Pan_paniscus
ENSPPRG00000012182	APOBEC1	100	100.000	ENSPTIG00000020280	APOBEC1	100	100.000	Panthera_tigris_altaica
ENSPPRG00000012182	APOBEC1	100	81.356	ENSPTRG00000004614	APOBEC1	100	81.356	Pan_troglodytes
ENSPPRG00000012182	APOBEC1	100	81.780	ENSPANG00000021027	APOBEC1	100	81.780	Papio_anubis
ENSPPRG00000012182	APOBEC1	78	43.784	ENSPSIG00000012568	-	80	43.784	Pelodiscus_sinensis
ENSPPRG00000012182	APOBEC1	57	48.649	ENSPSIG00000012791	-	75	48.649	Pelodiscus_sinensis
ENSPPRG00000012182	APOBEC1	97	70.742	ENSPEMG00000023841	Apobec1	100	70.742	Peromyscus_maniculatus_bairdii
ENSPPRG00000012182	APOBEC1	100	71.610	ENSPCIG00000023973	APOBEC1	100	71.610	Phascolarctos_cinereus
ENSPPRG00000012182	APOBEC1	100	79.237	ENSPPYG00000004228	APOBEC1	95	79.237	Pongo_abelii
ENSPPRG00000012182	APOBEC1	79	78.075	ENSPCAG00000008733	APOBEC1	100	78.075	Procavia_capensis
ENSPPRG00000012182	APOBEC1	94	82.432	ENSPCOG00000013957	APOBEC1	98	82.432	Propithecus_coquereli
ENSPPRG00000012182	APOBEC1	100	69.068	ENSPVAG00000010709	APOBEC1	100	69.068	Pteropus_vampyrus
ENSPPRG00000012182	APOBEC1	97	69.737	ENSRNOG00000015411	Apobec1	99	69.737	Rattus_norvegicus
ENSPPRG00000012182	APOBEC1	100	81.356	ENSRBIG00000031161	APOBEC1	100	81.356	Rhinopithecus_bieti
ENSPPRG00000012182	APOBEC1	100	81.356	ENSRROG00000033576	APOBEC1	100	81.356	Rhinopithecus_roxellana
ENSPPRG00000012182	APOBEC1	73	80.347	ENSSBOG00000030587	APOBEC1	98	80.347	Saimiri_boliviensis_boliviensis
ENSPPRG00000012182	APOBEC1	96	70.485	ENSSHAG00000008925	APOBEC1	99	70.485	Sarcophilus_harrisii
ENSPPRG00000012182	APOBEC1	56	73.485	ENSSARG00000011972	-	100	73.485	Sorex_araneus
ENSPPRG00000012182	APOBEC1	73	69.767	ENSSARG00000000032	-	100	69.767	Sorex_araneus
ENSPPRG00000012182	APOBEC1	92	41.333	ENSSPUG00000009044	-	86	41.333	Sphenodon_punctatus
ENSPPRG00000012182	APOBEC1	100	80.932	ENSSSCG00000000668	APOBEC1	100	80.932	Sus_scrofa
ENSPPRG00000012182	APOBEC1	61	50.685	ENSTGUG00000013118	-	100	50.685	Taeniopygia_guttata
ENSPPRG00000012182	APOBEC1	94	75.566	ENSTBEG00000010043	APOBEC1	94	75.566	Tupaia_belangeri
ENSPPRG00000012182	APOBEC1	79	76.471	ENSTTRG00000014015	APOBEC1	100	76.471	Tursiops_truncatus
ENSPPRG00000012182	APOBEC1	99	86.266	ENSUAMG00000011636	APOBEC1	95	86.266	Ursus_americanus
ENSPPRG00000012182	APOBEC1	99	86.266	ENSUMAG00000016552	APOBEC1	95	86.266	Ursus_maritimus
ENSPPRG00000012182	APOBEC1	100	78.814	ENSVPAG00000001343	APOBEC1	100	78.814	Vicugna_pacos
ENSPPRG00000012182	APOBEC1	100	86.017	ENSVVUG00000010522	APOBEC1	100	86.017	Vulpes_vulpes