EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPRG00000013475 (Gene tree)
Gene ID: 109259359
Gene Symbol: ZNF550
Alias: -
Full Name: zinc finger protein 550
Gene Type: protein_coding
Species: Panthera_pardus
Status: putative
Strand: Plus strand
Length: 10300 bases
Position: chrKV860474.1:241759-252058
Accession: 109259359
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPRP00000023195	zf-C2H2	PF00096.26	1e-34	1	5
ENSPPRP00000023195	zf-C2H2	PF00096.26	1e-34	2	5
ENSPPRP00000023195	zf-C2H2	PF00096.26	1e-34	3	5
ENSPPRP00000023195	zf-C2H2	PF00096.26	1e-34	4	5
ENSPPRP00000023195	zf-C2H2	PF00096.26	1e-34	5	5
ENSPPRP00000023204	zf-C2H2	PF00096.26	2.5e-34	1	5
ENSPPRP00000023204	zf-C2H2	PF00096.26	2.5e-34	2	5
ENSPPRP00000023204	zf-C2H2	PF00096.26	2.5e-34	3	5
ENSPPRP00000023204	zf-C2H2	PF00096.26	2.5e-34	4	5
ENSPPRP00000023204	zf-C2H2	PF00096.26	2.5e-34	5	5
ENSPPRP00000023195	zf-met	PF12874.7	6.7e-06	1	1
ENSPPRP00000023204	zf-met	PF12874.7	1.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPRT00000021755	ZNF550-203	1833	XM_019436956	ENSPPRP00000023204	420 (aa)	XP_019292501	-
ENSPPRT00000021744	ZNF550-201	1140	-	ENSPPRP00000023195	379 (aa)	-	-
ENSPPRT00000021751	ZNF550-202	321	-	ENSPPRP00000023202	106 (aa)	-	-

Gene Model

Click here to download ENSPPRG00000013475's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPRG00000013475's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPRG00000013475	ZNF550	99	52.261	ENSPPRG00000000109	-	97	52.261
ENSPPRG00000013475	ZNF550	59	40.000	ENSPPRG00000012562	-	83	40.000
ENSPPRG00000013475	ZNF550	58	46.073	ENSPPRG00000009152	ZBTB49	50	46.073
ENSPPRG00000013475	ZNF550	99	38.308	ENSPPRG00000007804	ZFP1	97	38.308
ENSPPRG00000013475	ZNF550	58	35.751	ENSPPRG00000013540	ZNF784	60	34.343
ENSPPRG00000013475	ZNF550	60	53.241	ENSPPRG00000015186	ZNF112	98	53.241
ENSPPRG00000013475	ZNF550	71	42.222	ENSPPRG00000003132	ZSCAN22	55	42.222
ENSPPRG00000013475	ZNF550	99	52.535	ENSPPRG00000014343	ZNF226	98	52.535
ENSPPRG00000013475	ZNF550	60	38.532	ENSPPRG00000013523	ZNF865	85	38.532
ENSPPRG00000013475	ZNF550	99	52.212	ENSPPRG00000014318	ZNF317	90	48.969
ENSPPRG00000013475	ZNF550	99	46.018	ENSPPRG00000024607	ZFP69B	85	46.018
ENSPPRG00000013475	ZNF550	99	49.558	ENSPPRG00000014300	ZNF234	98	49.558
ENSPPRG00000013475	ZNF550	75	42.169	ENSPPRG00000001020	PRDM5	78	42.169
ENSPPRG00000013475	ZNF550	65	45.872	ENSPPRG00000011771	ZNF574	71	41.000
ENSPPRG00000013475	ZNF550	59	49.770	ENSPPRG00000004208	ZNF768	55	49.107
ENSPPRG00000013475	ZNF550	92	47.170	ENSPPRG00000012906	ZNF236	67	40.179
ENSPPRG00000013475	ZNF550	99	47.768	ENSPPRG00000011201	-	99	47.768
ENSPPRG00000013475	ZNF550	60	40.513	ENSPPRG00000015444	ZNF319	87	44.898
ENSPPRG00000013475	ZNF550	65	30.556	ENSPPRG00000019601	ZNF423	65	30.556
ENSPPRG00000013475	ZNF550	81	63.636	ENSPPRG00000014617	ZNF235	75	63.636
ENSPPRG00000013475	ZNF550	59	37.168	ENSPPRG00000002368	GTF3A	80	37.168
ENSPPRG00000013475	ZNF550	94	40.449	ENSPPRG00000020451	ZNF770	89	39.024
ENSPPRG00000013475	ZNF550	99	50.000	ENSPPRG00000002587	ZNF81	97	50.000
ENSPPRG00000013475	ZNF550	59	37.908	ENSPPRG00000016750	-	61	35.821
ENSPPRG00000013475	ZNF550	60	35.374	ENSPPRG00000007308	ZNF526	77	36.054

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPRG00000013475	ZNF550	99	70.341	ENSG00000251369	ZNF550	99	70.341	Homo_sapiens
ENSPPRG00000013475	ZNF550	99	68.504	ENSCATG00000020915	ZNF550	99	68.504	Cercocebus_atys
ENSPPRG00000013475	ZNF550	99	57.106	ENSCLAG00000000250	ZNF550	95	61.376	Chinchilla_lanigera
ENSPPRG00000013475	ZNF550	98	68.039	ENSCSAG00000001629	ZNF550	99	68.039	Chlorocebus_sabaeus
ENSPPRG00000013475	ZNF550	99	68.766	ENSCANG00000033735	ZNF550	99	68.766	Colobus_angolensis_palliatus
ENSPPRG00000013475	ZNF550	89	61.834	ENSDNOG00000033330	-	99	61.408	Dasypus_novemcinctus
ENSPPRG00000013475	ZNF550	100	98.095	ENSFCAG00000034766	ZNF550	100	98.095	Felis_catus
ENSPPRG00000013475	ZNF550	99	70.079	ENSGGOG00000014068	ZNF550	99	70.079	Gorilla_gorilla
ENSPPRG00000013475	ZNF550	99	64.762	ENSHGLG00000018048	ZNF550	100	64.762	Heterocephalus_glaber_female
ENSPPRG00000013475	ZNF550	99	68.766	ENSMFAG00000036005	ZNF550	99	68.766	Macaca_fascicularis
ENSPPRG00000013475	ZNF550	99	68.504	ENSMMUG00000006122	ZNF550	99	68.504	Macaca_mulatta
ENSPPRG00000013475	ZNF550	99	68.766	ENSMNEG00000041366	ZNF550	99	68.766	Macaca_nemestrina
ENSPPRG00000013475	ZNF550	99	68.241	ENSMLEG00000034688	ZNF550	99	68.241	Mandrillus_leucophaeus
ENSPPRG00000013475	ZNF550	99	69.129	ENSMICG00000007561	ZNF550	100	69.129	Microcebus_murinus
ENSPPRG00000013475	ZNF550	99	98.997	ENSPTIG00000018007	ZNF550	80	99.094	Panthera_tigris_altaica
ENSPPRG00000013475	ZNF550	99	70.079	ENSPTRG00000011560	ZNF550	99	70.079	Pan_troglodytes
ENSPPRG00000013475	ZNF550	99	68.504	ENSPANG00000030602	ZNF550	99	68.504	Papio_anubis
ENSPPRG00000013475	ZNF550	99	69.921	ENSPCOG00000018751	ZNF550	99	69.921	Propithecus_coquereli
ENSPPRG00000013475	ZNF550	99	65.871	ENSPVAG00000000908	ZNF550	100	65.871	Pteropus_vampyrus
ENSPPRG00000013475	ZNF550	99	68.504	ENSRBIG00000017275	ZNF550	99	68.504	Rhinopithecus_bieti
ENSPPRG00000013475	ZNF550	99	68.504	ENSRROG00000040063	ZNF550	99	68.504	Rhinopithecus_roxellana
ENSPPRG00000013475	ZNF550	98	70.803	ENSTTRG00000000293	ZNF550	99	70.803	Tursiops_truncatus