EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPPRG00000023470 (Gene tree)
Gene ID: 109247642
Gene Symbol: UPF1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Panthera_pardus
Status: putative
Strand: Plus strand
Length: 53383 bases
Position: chrKV860340.1:3576649-3630031
Accession: 109247642
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPRP00000002368	UPF1_Zn_bind	PF09416.10	7.1e-75	1	1
ENSPPRP00000002368	ResIII	PF04851.15	2.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPRT00000032750	UPF1-201	4650	XM_019416410	ENSPPRP00000002368	1130 (aa)	XP_019271955	UPI0009051FD3

Gene Model

Click here to download ENSPPRG00000023470's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPRG00000023470's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPRG00000023470	UPF1	100	99.558	ENSG00000005007	UPF1	100	99.558	Homo_sapiens
ENSPPRG00000023470	UPF1	100	90.485	ENSAPOG00000023773	upf1	100	90.576	Acanthochromis_polyacanthus
ENSPPRG00000023470	UPF1	100	91.696	ENSAPOG00000010916	-	100	91.696	Acanthochromis_polyacanthus
ENSPPRG00000023470	UPF1	100	98.588	ENSAMEG00000011474	UPF1	100	98.588	Ailuropoda_melanoleuca
ENSPPRG00000023470	UPF1	100	90.317	ENSACIG00000019949	upf1	100	90.661	Amphilophus_citrinellus
ENSPPRG00000023470	UPF1	92	94.015	ENSACIG00000010985	-	100	94.112	Amphilophus_citrinellus
ENSPPRG00000023470	UPF1	100	91.696	ENSAOCG00000006352	-	100	91.696	Amphiprion_ocellaris
ENSPPRG00000023470	UPF1	100	90.000	ENSAOCG00000018519	upf1	100	90.576	Amphiprion_ocellaris
ENSPPRG00000023470	UPF1	100	90.000	ENSAPEG00000016344	upf1	100	90.576	Amphiprion_percula
ENSPPRG00000023470	UPF1	100	91.696	ENSAPEG00000006292	-	100	91.696	Amphiprion_percula
ENSPPRG00000023470	UPF1	100	91.784	ENSATEG00000016606	-	100	91.784	Anabas_testudineus
ENSPPRG00000023470	UPF1	100	89.199	ENSATEG00000017867	upf1	100	89.983	Anabas_testudineus
ENSPPRG00000023470	UPF1	93	98.387	ENSAPLG00000009175	UPF1	100	98.387	Anas_platyrhynchos
ENSPPRG00000023470	UPF1	95	96.933	ENSANAG00000024107	UPF1	97	96.933	Aotus_nancymaae
ENSPPRG00000023470	UPF1	100	90.053	ENSACLG00000007181	upf1	100	90.396	Astatotilapia_calliptera
ENSPPRG00000023470	UPF1	100	91.600	ENSACLG00000022630	-	100	91.512	Astatotilapia_calliptera
ENSPPRG00000023470	UPF1	100	92.403	ENSAMXG00000042187	upf1	100	92.845	Astyanax_mexicanus
ENSPPRG00000023470	UPF1	100	99.469	ENSBTAG00000020922	UPF1	100	99.469	Bos_taurus
ENSPPRG00000023470	UPF1	89	50.441	WBGene00004880	smg-2	99	47.649	Caenorhabditis_elegans
ENSPPRG00000023470	UPF1	100	99.558	ENSCJAG00000019627	UPF1	100	99.558	Callithrix_jacchus
ENSPPRG00000023470	UPF1	100	99.912	ENSCAFG00000014578	UPF1	100	99.912	Canis_familiaris
ENSPPRG00000023470	UPF1	100	98.938	ENSCAFG00020012347	UPF1	100	98.938	Canis_lupus_dingo
ENSPPRG00000023470	UPF1	100	99.027	ENSCHIG00000011018	UPF1	100	99.027	Capra_hircus
ENSPPRG00000023470	UPF1	96	97.778	ENSTSYG00000008877	UPF1	99	97.778	Carlito_syrichta
ENSPPRG00000023470	UPF1	93	98.478	ENSCAPG00000005758	UPF1	95	98.478	Cavia_aperea
ENSPPRG00000023470	UPF1	100	96.205	ENSCPOG00000025463	UPF1	100	96.205	Cavia_porcellus
ENSPPRG00000023470	UPF1	100	98.938	ENSCCAG00000032175	UPF1	100	98.938	Cebus_capucinus
ENSPPRG00000023470	UPF1	93	99.525	ENSCATG00000040306	UPF1	98	99.525	Cercocebus_atys
ENSPPRG00000023470	UPF1	96	97.969	ENSCLAG00000004037	UPF1	99	99.524	Chinchilla_lanigera
ENSPPRG00000023470	UPF1	100	98.496	ENSCSAG00000005276	UPF1	100	98.496	Chlorocebus_sabaeus
ENSPPRG00000023470	UPF1	100	96.123	ENSCPBG00000012513	UPF1	100	96.123	Chrysemys_picta_bellii
ENSPPRG00000023470	UPF1	78	77.288	ENSCING00000021399	-	99	77.288	Ciona_intestinalis
ENSPPRG00000023470	UPF1	99	71.216	ENSCSAVG00000006533	-	99	71.304	Ciona_savignyi
ENSPPRG00000023470	UPF1	95	98.599	ENSCANG00000029819	UPF1	99	98.599	Colobus_angolensis_palliatus
ENSPPRG00000023470	UPF1	100	97.522	ENSCGRG00001021067	Upf1	100	97.522	Cricetulus_griseus_chok1gshd
ENSPPRG00000023470	UPF1	95	98.127	ENSCGRG00000013480	Upf1	99	98.127	Cricetulus_griseus_crigri
ENSPPRG00000023470	UPF1	100	91.689	ENSCSEG00000016159	-	100	91.600	Cynoglossus_semilaevis
ENSPPRG00000023470	UPF1	100	85.336	ENSCSEG00000017239	upf1	100	85.424	Cynoglossus_semilaevis
ENSPPRG00000023470	UPF1	100	91.431	ENSCVAG00000010561	upf1	100	91.343	Cyprinodon_variegatus
ENSPPRG00000023470	UPF1	100	92.226	ENSDARG00000016302	upf1	100	92.668	Danio_rerio
ENSPPRG00000023470	UPF1	95	95.612	ENSDORG00000009984	Upf1	95	96.673	Dipodomys_ordii
ENSPPRG00000023470	UPF1	85	69.969	FBgn0030354	Upf1	84	66.572	Drosophila_melanogaster
ENSPPRG00000023470	UPF1	56	83.466	ENSEBUG00000010069	upf1	96	83.625	Eptatretus_burgeri
ENSPPRG00000023470	UPF1	100	98.496	ENSEASG00005006549	UPF1	100	98.496	Equus_asinus_asinus
ENSPPRG00000023470	UPF1	100	98.496	ENSECAG00000010639	UPF1	100	98.496	Equus_caballus
ENSPPRG00000023470	UPF1	100	89.622	ENSELUG00000020917	upf1	100	89.886	Esox_lucius
ENSPPRG00000023470	UPF1	100	91.037	ENSELUG00000012916	-	100	90.957	Esox_lucius
ENSPPRG00000023470	UPF1	100	100.000	ENSFCAG00000009757	UPF1	100	100.000	Felis_catus
ENSPPRG00000023470	UPF1	96	95.963	ENSFALG00000009312	UPF1	99	95.963	Ficedula_albicollis
ENSPPRG00000023470	UPF1	97	96.884	ENSFDAG00000014816	UPF1	99	99.429	Fukomys_damarensis
ENSPPRG00000023470	UPF1	85	93.829	ENSFHEG00000016276	-	96	94.011	Fundulus_heteroclitus
ENSPPRG00000023470	UPF1	100	87.555	ENSFHEG00000006428	upf1	100	87.555	Fundulus_heteroclitus
ENSPPRG00000023470	UPF1	100	91.254	ENSGMOG00000007541	upf1	100	91.696	Gadus_morhua
ENSPPRG00000023470	UPF1	100	96.991	ENSGALG00000003220	UPF1	100	96.991	Gallus_gallus
ENSPPRG00000023470	UPF1	100	91.247	ENSGAFG00000004831	upf1	100	91.158	Gambusia_affinis
ENSPPRG00000023470	UPF1	62	94.043	ENSGAFG00000015443	-	88	91.758	Gambusia_affinis
ENSPPRG00000023470	UPF1	100	96.463	ENSGAGG00000022217	UPF1	100	96.463	Gopherus_agassizii
ENSPPRG00000023470	UPF1	93	98.668	ENSGGOG00000002608	UPF1	99	98.668	Gorilla_gorilla
ENSPPRG00000023470	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSPPRG00000023470	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSPPRG00000023470	UPF1	100	99.027	ENSHGLG00000010900	UPF1	100	99.027	Heterocephalus_glaber_female
ENSPPRG00000023470	UPF1	96	95.660	ENSHGLG00100005904	UPF1	99	95.660	Heterocephalus_glaber_male
ENSPPRG00000023470	UPF1	100	90.716	ENSHCOG00000008918	upf1	100	93.014	Hippocampus_comes
ENSPPRG00000023470	UPF1	100	92.845	ENSIPUG00000005108	UPF1	100	93.198	Ictalurus_punctatus
ENSPPRG00000023470	UPF1	100	98.938	ENSSTOG00000009196	UPF1	100	98.938	Ictidomys_tridecemlineatus
ENSPPRG00000023470	UPF1	100	98.053	ENSJJAG00000023151	Upf1	100	98.053	Jaculus_jaculus
ENSPPRG00000023470	UPF1	100	91.696	ENSKMAG00000004962	upf1	100	91.608	Kryptolebias_marmoratus
ENSPPRG00000023470	UPF1	100	91.608	ENSLBEG00000027848	-	100	91.608	Labrus_bergylta
ENSPPRG00000023470	UPF1	100	88.569	ENSLBEG00000014862	upf1	100	89.703	Labrus_bergylta
ENSPPRG00000023470	UPF1	62	97.418	ENSLACG00000008482	UPF1	100	97.418	Latimeria_chalumnae
ENSPPRG00000023470	UPF1	100	94.164	ENSLOCG00000002072	upf1	100	94.164	Lepisosteus_oculatus
ENSPPRG00000023470	UPF1	100	98.673	ENSLAFG00000014963	UPF1	100	98.673	Loxodonta_africana
ENSPPRG00000023470	UPF1	100	99.558	ENSMFAG00000037748	UPF1	100	99.558	Macaca_fascicularis
ENSPPRG00000023470	UPF1	100	99.558	ENSMMUG00000023286	UPF1	100	99.558	Macaca_mulatta
ENSPPRG00000023470	UPF1	100	99.558	ENSMNEG00000000046	UPF1	100	99.558	Macaca_nemestrina
ENSPPRG00000023470	UPF1	93	99.715	ENSMLEG00000028404	UPF1	99	99.715	Mandrillus_leucophaeus
ENSPPRG00000023470	UPF1	100	90.989	ENSMAMG00000006231	-	100	91.431	Mastacembelus_armatus
ENSPPRG00000023470	UPF1	100	88.937	ENSMAMG00000006229	upf1	100	89.895	Mastacembelus_armatus
ENSPPRG00000023470	UPF1	100	91.600	ENSMZEG00005016386	-	100	91.512	Maylandia_zebra
ENSPPRG00000023470	UPF1	100	89.034	ENSMZEG00005003489	upf1	100	90.201	Maylandia_zebra
ENSPPRG00000023470	UPF1	93	98.004	ENSMGAG00000004745	UPF1	100	98.004	Meleagris_gallopavo
ENSPPRG00000023470	UPF1	95	97.403	ENSMAUG00000011398	Upf1	97	97.403	Mesocricetus_auratus
ENSPPRG00000023470	UPF1	100	98.319	ENSMICG00000001659	UPF1	100	98.319	Microcebus_murinus
ENSPPRG00000023470	UPF1	100	98.407	ENSMOCG00000005699	Upf1	100	98.407	Microtus_ochrogaster
ENSPPRG00000023470	UPF1	93	91.477	ENSMMOG00000007537	-	99	91.572	Mola_mola
ENSPPRG00000023470	UPF1	100	89.735	ENSMMOG00000007881	upf1	100	90.186	Mola_mola
ENSPPRG00000023470	UPF1	100	98.147	ENSMODG00000003689	UPF1	100	98.147	Monodelphis_domestica
ENSPPRG00000023470	UPF1	100	90.501	ENSMALG00000018100	-	100	90.501	Monopterus_albus
ENSPPRG00000023470	UPF1	100	90.000	ENSMALG00000000144	upf1	100	90.265	Monopterus_albus
ENSPPRG00000023470	UPF1	100	98.407	MGP_CAROLIEiJ_G0031142	Upf1	100	98.407	Mus_caroli
ENSPPRG00000023470	UPF1	100	98.407	ENSMUSG00000058301	Upf1	100	98.407	Mus_musculus
ENSPPRG00000023470	UPF1	100	98.407	MGP_PahariEiJ_G0021607	Upf1	100	98.407	Mus_pahari
ENSPPRG00000023470	UPF1	100	98.407	MGP_SPRETEiJ_G0032260	Upf1	100	98.407	Mus_spretus
ENSPPRG00000023470	UPF1	100	98.938	ENSMPUG00000015516	UPF1	100	98.938	Mustela_putorius_furo
ENSPPRG00000023470	UPF1	99	98.490	ENSMLUG00000012122	UPF1	99	98.490	Myotis_lucifugus
ENSPPRG00000023470	UPF1	100	98.407	ENSNGAG00000024107	Upf1	100	98.407	Nannospalax_galili
ENSPPRG00000023470	UPF1	100	89.329	ENSNBRG00000022069	-	100	92.981	Neolamprologus_brichardi
ENSPPRG00000023470	UPF1	100	88.380	ENSNBRG00000000670	upf1	100	88.722	Neolamprologus_brichardi
ENSPPRG00000023470	UPF1	93	93.911	ENSNLEG00000006062	UPF1	99	93.911	Nomascus_leucogenys
ENSPPRG00000023470	UPF1	83	94.510	ENSMEUG00000014146	-	83	94.510	Notamacropus_eugenii
ENSPPRG00000023470	UPF1	93	90.676	ENSOPRG00000014018	UPF1	99	90.676	Ochotona_princeps
ENSPPRG00000023470	UPF1	100	97.611	ENSODEG00000012426	UPF1	100	97.611	Octodon_degus
ENSPPRG00000023470	UPF1	100	89.295	ENSONIG00000010452	upf1	100	90.464	Oreochromis_niloticus
ENSPPRG00000023470	UPF1	100	91.689	ENSONIG00000012729	-	100	91.600	Oreochromis_niloticus
ENSPPRG00000023470	UPF1	100	97.350	ENSOANG00000004568	UPF1	100	97.350	Ornithorhynchus_anatinus
ENSPPRG00000023470	UPF1	100	91.608	ENSORLG00000008453	upf1	100	91.608	Oryzias_latipes
ENSPPRG00000023470	UPF1	100	91.527	ENSORLG00020014758	upf1	100	91.527	Oryzias_latipes_hni
ENSPPRG00000023470	UPF1	100	91.527	ENSORLG00015010165	upf1	100	91.527	Oryzias_latipes_hsok
ENSPPRG00000023470	UPF1	100	91.696	ENSOMEG00000003665	upf1	100	91.608	Oryzias_melastigma
ENSPPRG00000023470	UPF1	100	98.673	ENSOGAG00000012866	UPF1	100	98.673	Otolemur_garnettii
ENSPPRG00000023470	UPF1	96	97.516	ENSOARG00000010739	UPF1	100	97.516	Ovis_aries
ENSPPRG00000023470	UPF1	95	98.599	ENSPPAG00000043884	UPF1	97	98.599	Pan_paniscus
ENSPPRG00000023470	UPF1	93	96.866	ENSPTIG00000010159	UPF1	99	96.866	Panthera_tigris_altaica
ENSPPRG00000023470	UPF1	100	99.558	ENSPTRG00000010721	UPF1	100	99.558	Pan_troglodytes
ENSPPRG00000023470	UPF1	100	99.558	ENSPANG00000008847	UPF1	100	99.558	Papio_anubis
ENSPPRG00000023470	UPF1	91	94.010	ENSPKIG00000006069	upf1	99	91.573	Paramormyrops_kingsleyae
ENSPPRG00000023470	UPF1	68	98.039	ENSPSIG00000009491	UPF1	100	98.039	Pelodiscus_sinensis
ENSPPRG00000023470	UPF1	100	88.370	ENSPMGG00000017327	upf1	100	88.478	Periophthalmus_magnuspinnatus
ENSPPRG00000023470	UPF1	100	98.496	ENSPEMG00000001085	Upf1	100	98.496	Peromyscus_maniculatus_bairdii
ENSPPRG00000023470	UPF1	100	86.608	ENSPMAG00000001206	upf1	100	86.344	Petromyzon_marinus
ENSPPRG00000023470	UPF1	100	97.699	ENSPCIG00000006156	UPF1	100	97.699	Phascolarctos_cinereus
ENSPPRG00000023470	UPF1	100	88.519	ENSPLAG00000018155	-	100	88.431	Poecilia_latipinna
ENSPPRG00000023470	UPF1	100	91.335	ENSPLAG00000016232	-	100	91.247	Poecilia_latipinna
ENSPPRG00000023470	UPF1	100	91.424	ENSPMEG00000016319	-	100	91.335	Poecilia_mexicana
ENSPPRG00000023470	UPF1	100	89.056	ENSPMEG00000011443	-	100	88.967	Poecilia_mexicana
ENSPPRG00000023470	UPF1	100	91.158	ENSPREG00000011247	-	100	91.070	Poecilia_reticulata
ENSPPRG00000023470	UPF1	100	88.957	ENSPREG00000009940	upf1	100	88.957	Poecilia_reticulata
ENSPPRG00000023470	UPF1	100	94.602	ENSPPYG00000009752	UPF1	100	94.602	Pongo_abelii
ENSPPRG00000023470	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSPPRG00000023470	UPF1	100	99.469	ENSPCOG00000023813	UPF1	100	99.469	Propithecus_coquereli
ENSPPRG00000023470	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSPPRG00000023470	UPF1	100	89.034	ENSPNYG00000003694	upf1	100	90.201	Pundamilia_nyererei
ENSPPRG00000023470	UPF1	100	91.600	ENSPNYG00000016731	-	100	91.512	Pundamilia_nyererei
ENSPPRG00000023470	UPF1	100	92.403	ENSPNAG00000025614	upf1	100	92.845	Pygocentrus_nattereri
ENSPPRG00000023470	UPF1	100	98.407	ENSRNOG00000020134	Upf1	100	98.407	Rattus_norvegicus
ENSPPRG00000023470	UPF1	95	96.265	ENSRBIG00000013894	UPF1	98	98.485	Rhinopithecus_bieti
ENSPPRG00000023470	UPF1	95	98.599	ENSRROG00000040935	UPF1	99	98.599	Rhinopithecus_roxellana
ENSPPRG00000023470	UPF1	75	55.128	YMR080C	NAM7	87	55.128	Saccharomyces_cerevisiae
ENSPPRG00000023470	UPF1	96	97.422	ENSSBOG00000023632	UPF1	98	97.422	Saimiri_boliviensis_boliviensis
ENSPPRG00000023470	UPF1	93	98.955	ENSSHAG00000010499	UPF1	100	98.955	Sarcophilus_harrisii
ENSPPRG00000023470	UPF1	100	94.253	ENSSFOG00015021095	upf1	99	96.300	Scleropages_formosus
ENSPPRG00000023470	UPF1	100	88.220	ENSSMAG00000005055	upf1	100	89.015	Scophthalmus_maximus
ENSPPRG00000023470	UPF1	100	91.696	ENSSMAG00000021018	-	100	91.696	Scophthalmus_maximus
ENSPPRG00000023470	UPF1	100	91.961	ENSSDUG00000009629	-	100	91.961	Seriola_dumerili
ENSPPRG00000023470	UPF1	100	89.199	ENSSDUG00000013320	upf1	100	90.157	Seriola_dumerili
ENSPPRG00000023470	UPF1	100	89.982	ENSSLDG00000020868	upf1	100	90.439	Seriola_lalandi_dorsalis
ENSPPRG00000023470	UPF1	100	91.961	ENSSLDG00000006878	-	100	91.961	Seriola_lalandi_dorsalis
ENSPPRG00000023470	UPF1	100	96.195	ENSSPUG00000010538	UPF1	100	96.195	Sphenodon_punctatus
ENSPPRG00000023470	UPF1	100	88.506	ENSSPAG00000000003	upf1	100	88.448	Stegastes_partitus
ENSPPRG00000023470	UPF1	100	91.777	ENSSPAG00000011521	-	100	91.689	Stegastes_partitus
ENSPPRG00000023470	UPF1	100	99.381	ENSSSCG00000039301	UPF1	100	99.381	Sus_scrofa
ENSPPRG00000023470	UPF1	83	89.809	ENSTGUG00000001057	UPF1	100	95.723	Taeniopygia_guttata
ENSPPRG00000023470	UPF1	100	90.628	ENSTRUG00000005131	-	100	90.628	Takifugu_rubripes
ENSPPRG00000023470	UPF1	100	89.646	ENSTRUG00000000150	upf1	100	89.646	Takifugu_rubripes
ENSPPRG00000023470	UPF1	100	94.513	ENSTTRG00000011544	UPF1	100	93.717	Tursiops_truncatus
ENSPPRG00000023470	UPF1	100	98.938	ENSUAMG00000007093	UPF1	100	98.938	Ursus_americanus
ENSPPRG00000023470	UPF1	95	99.065	ENSUMAG00000006652	UPF1	99	99.065	Ursus_maritimus
ENSPPRG00000023470	UPF1	100	98.938	ENSVVUG00000007797	UPF1	100	98.938	Vulpes_vulpes
ENSPPRG00000023470	UPF1	100	82.643	ENSXETG00000013602	upf1	100	82.643	Xenopus_tropicalis
ENSPPRG00000023470	UPF1	92	93.762	ENSXCOG00000005764	-	100	93.762	Xiphophorus_couchianus
ENSPPRG00000023470	UPF1	97	88.848	ENSXCOG00000015275	-	96	88.757	Xiphophorus_couchianus
ENSPPRG00000023470	UPF1	100	91.247	ENSXMAG00000002540	-	100	91.158	Xiphophorus_maculatus
ENSPPRG00000023470	UPF1	100	89.125	ENSXMAG00000001703	-	100	89.036	Xiphophorus_maculatus