EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPPRG00000024797 (Gene tree)
Gene ID: 109270851
Gene Symbol: USB1
Alias: -
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Panthera_pardus
Status: putative
Strand: Minus strand
Length: 11170 bases
Position: chrKV860300.1:14732536-14743705
Accession: 109270851
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPRP00000000479	HVSL	PF09749.9	4.1e-62	1	1
ENSPPRP00000000482	HVSL	PF09749.9	2e-50	1	2
ENSPPRP00000000482	HVSL	PF09749.9	2e-50	2	2
ENSPPRP00000000469	HVSL	PF09749.9	1.5e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPRT00000034740	USB1-201	2561	XM_019455783	ENSPPRP00000000479	267 (aa)	XP_019311328	UPI00090580D9
ENSPPRT00000034743	USB1-202	750	-	ENSPPRP00000000482	249 (aa)	-	-
ENSPPRT00000034745	USB1-203	483	-	ENSPPRP00000000469	160 (aa)	-	-

Gene Model

Click here to download ENSPPRG00000024797's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPRG00000024797's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPRG00000024797	USB1	100	84.644	ENSG00000103005	USB1	100	88.785	Homo_sapiens
ENSPPRG00000024797	USB1	98	45.878	ENSAPOG00000011942	usb1	83	49.785	Acanthochromis_polyacanthus
ENSPPRG00000024797	USB1	100	88.476	ENSAMEG00000017205	USB1	100	88.848	Ailuropoda_melanoleuca
ENSPPRG00000024797	USB1	85	53.540	ENSACIG00000012234	usb1	83	53.540	Amphilophus_citrinellus
ENSPPRG00000024797	USB1	95	49.012	ENSAOCG00000014831	usb1	99	46.975	Amphiprion_ocellaris
ENSPPRG00000024797	USB1	95	49.407	ENSAPEG00000000296	usb1	99	47.331	Amphiprion_percula
ENSPPRG00000024797	USB1	95	50.198	ENSATEG00000009348	usb1	86	50.403	Anabas_testudineus
ENSPPRG00000024797	USB1	84	70.044	ENSAPLG00000002756	USB1	100	69.912	Anas_platyrhynchos
ENSPPRG00000024797	USB1	85	62.009	ENSACAG00000015481	USB1	100	62.009	Anolis_carolinensis
ENSPPRG00000024797	USB1	100	83.895	ENSANAG00000035640	USB1	100	83.895	Aotus_nancymaae
ENSPPRG00000024797	USB1	88	50.855	ENSACLG00000020586	usb1	83	50.855	Astatotilapia_calliptera
ENSPPRG00000024797	USB1	84	50.222	ENSAMXG00000040146	usb1	75	50.222	Astyanax_mexicanus
ENSPPRG00000024797	USB1	100	84.270	ENSBTAG00000015758	USB1	100	84.270	Bos_taurus
ENSPPRG00000024797	USB1	100	85.393	ENSCJAG00000011733	USB1	100	85.393	Callithrix_jacchus
ENSPPRG00000024797	USB1	99	85.662	ENSCAFG00000008556	USB1	73	85.662	Canis_familiaris
ENSPPRG00000024797	USB1	99	86.090	ENSCAFG00020009263	USB1	99	86.090	Canis_lupus_dingo
ENSPPRG00000024797	USB1	100	83.521	ENSCHIG00000024290	USB1	100	83.521	Capra_hircus
ENSPPRG00000024797	USB1	100	88.015	ENSTSYG00000006997	USB1	100	88.015	Carlito_syrichta
ENSPPRG00000024797	USB1	86	71.963	ENSCAPG00000009057	USB1	100	71.963	Cavia_aperea
ENSPPRG00000024797	USB1	100	82.090	ENSCPOG00000014325	USB1	100	81.343	Cavia_porcellus
ENSPPRG00000024797	USB1	100	84.644	ENSCCAG00000022132	USB1	100	84.644	Cebus_capucinus
ENSPPRG00000024797	USB1	100	86.142	ENSCATG00000032174	USB1	100	86.142	Cercocebus_atys
ENSPPRG00000024797	USB1	66	88.068	ENSCLAG00000007363	USB1	100	88.068	Chinchilla_lanigera
ENSPPRG00000024797	USB1	100	86.891	ENSCSAG00000004783	USB1	100	86.891	Chlorocebus_sabaeus
ENSPPRG00000024797	USB1	100	59.712	ENSCPBG00000026943	USB1	100	61.151	Chrysemys_picta_bellii
ENSPPRG00000024797	USB1	84	30.932	ENSCING00000011490	-	86	30.932	Ciona_intestinalis
ENSPPRG00000024797	USB1	82	30.837	ENSCSAVG00000000894	-	81	30.837	Ciona_savignyi
ENSPPRG00000024797	USB1	100	85.768	ENSCANG00000037135	USB1	100	85.768	Colobus_angolensis_palliatus
ENSPPRG00000024797	USB1	100	83.582	ENSCGRG00001011243	USB1	100	83.582	Cricetulus_griseus_chok1gshd
ENSPPRG00000024797	USB1	100	83.582	ENSCGRG00000013252	USB1	100	83.582	Cricetulus_griseus_crigri
ENSPPRG00000024797	USB1	98	47.810	ENSCSEG00000013881	usb1	84	50.000	Cynoglossus_semilaevis
ENSPPRG00000024797	USB1	84	48.684	ENSCVAG00000009252	usb1	97	49.123	Cyprinodon_variegatus
ENSPPRG00000024797	USB1	84	50.893	ENSDARG00000003841	usb1	81	50.893	Danio_rerio
ENSPPRG00000024797	USB1	100	79.775	ENSDORG00000001888	Usb1	100	79.775	Dipodomys_ordii
ENSPPRG00000024797	USB1	76	38.350	FBgn0037713	CG16790	78	38.350	Drosophila_melanogaster
ENSPPRG00000024797	USB1	100	70.787	ENSETEG00000019682	USB1	100	70.787	Echinops_telfairi
ENSPPRG00000024797	USB1	83	50.000	ENSEBUG00000005889	usb1	78	50.000	Eptatretus_burgeri
ENSPPRG00000024797	USB1	100	87.640	ENSEASG00005005484	USB1	100	87.640	Equus_asinus_asinus
ENSPPRG00000024797	USB1	100	87.266	ENSECAG00000019493	USB1	91	87.266	Equus_caballus
ENSPPRG00000024797	USB1	66	80.682	ENSEEUG00000000154	USB1	100	61.798	Erinaceus_europaeus
ENSPPRG00000024797	USB1	88	46.809	ENSELUG00000010974	usb1	86	46.809	Esox_lucius
ENSPPRG00000024797	USB1	100	98.502	ENSFCAG00000002693	USB1	100	98.502	Felis_catus
ENSPPRG00000024797	USB1	100	59.489	ENSFALG00000006876	USB1	99	60.727	Ficedula_albicollis
ENSPPRG00000024797	USB1	100	85.019	ENSFDAG00000010052	USB1	100	85.019	Fukomys_damarensis
ENSPPRG00000024797	USB1	87	46.154	ENSFHEG00000012334	usb1	80	50.000	Fundulus_heteroclitus
ENSPPRG00000024797	USB1	84	49.327	ENSGMOG00000004228	usb1	99	49.327	Gadus_morhua
ENSPPRG00000024797	USB1	84	67.857	ENSGALG00000035604	USB1	100	63.806	Gallus_gallus
ENSPPRG00000024797	USB1	98	47.273	ENSGAFG00000021890	usb1	84	49.573	Gambusia_affinis
ENSPPRG00000024797	USB1	97	45.736	ENSGACG00000003257	usb1	84	48.718	Gasterosteus_aculeatus
ENSPPRG00000024797	USB1	100	60.806	ENSGAGG00000022572	USB1	100	60.806	Gopherus_agassizii
ENSPPRG00000024797	USB1	100	85.393	ENSGGOG00000017147	USB1	100	85.393	Gorilla_gorilla
ENSPPRG00000024797	USB1	88	51.709	ENSHBUG00000009823	usb1	83	51.709	Haplochromis_burtoni
ENSPPRG00000024797	USB1	100	85.019	ENSHGLG00000016078	USB1	98	85.019	Heterocephalus_glaber_female
ENSPPRG00000024797	USB1	100	85.019	ENSHGLG00100005562	USB1	98	85.019	Heterocephalus_glaber_male
ENSPPRG00000024797	USB1	81	52.535	ENSHCOG00000015633	usb1	86	52.915	Hippocampus_comes
ENSPPRG00000024797	USB1	84	53.571	ENSIPUG00000008601	usb1	78	53.571	Ictalurus_punctatus
ENSPPRG00000024797	USB1	100	84.982	ENSSTOG00000007548	USB1	100	84.615	Ictidomys_tridecemlineatus
ENSPPRG00000024797	USB1	100	86.142	ENSJJAG00000021859	Usb1	100	86.142	Jaculus_jaculus
ENSPPRG00000024797	USB1	93	47.638	ENSKMAG00000007200	usb1	89	48.016	Kryptolebias_marmoratus
ENSPPRG00000024797	USB1	74	51.515	ENSLBEG00000008452	usb1	64	52.105	Labrus_bergylta
ENSPPRG00000024797	USB1	91	51.807	ENSLACG00000000105	USB1	72	59.809	Latimeria_chalumnae
ENSPPRG00000024797	USB1	94	53.200	ENSLOCG00000000465	usb1	88	53.846	Lepisosteus_oculatus
ENSPPRG00000024797	USB1	100	65.185	ENSLAFG00000002267	USB1	100	65.556	Loxodonta_africana
ENSPPRG00000024797	USB1	100	86.517	ENSMFAG00000003926	USB1	100	86.517	Macaca_fascicularis
ENSPPRG00000024797	USB1	100	86.517	ENSMMUG00000022669	USB1	100	86.517	Macaca_mulatta
ENSPPRG00000024797	USB1	100	86.142	ENSMNEG00000042487	USB1	100	86.142	Macaca_nemestrina
ENSPPRG00000024797	USB1	100	86.517	ENSMLEG00000028756	USB1	100	86.517	Mandrillus_leucophaeus
ENSPPRG00000024797	USB1	98	47.842	ENSMAMG00000015092	usb1	86	49.796	Mastacembelus_armatus
ENSPPRG00000024797	USB1	88	50.855	ENSMZEG00005010008	usb1	83	50.855	Maylandia_zebra
ENSPPRG00000024797	USB1	100	82.397	ENSMAUG00000007832	Usb1	100	82.397	Mesocricetus_auratus
ENSPPRG00000024797	USB1	100	86.142	ENSMICG00000004900	USB1	100	86.142	Microcebus_murinus
ENSPPRG00000024797	USB1	100	82.772	ENSMOCG00000022647	Usb1	100	82.772	Microtus_ochrogaster
ENSPPRG00000024797	USB1	85	51.316	ENSMMOG00000000490	usb1	88	51.316	Mola_mola
ENSPPRG00000024797	USB1	100	65.926	ENSMODG00000014067	USB1	100	65.299	Monodelphis_domestica
ENSPPRG00000024797	USB1	96	48.627	ENSMALG00000005930	usb1	99	48.043	Monopterus_albus
ENSPPRG00000024797	USB1	100	80.524	MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	Mus_caroli
ENSPPRG00000024797	USB1	100	81.273	ENSMUSG00000031792	Usb1	100	84.956	Mus_musculus
ENSPPRG00000024797	USB1	100	81.273	MGP_PahariEiJ_G0023019	Usb1	100	84.615	Mus_pahari
ENSPPRG00000024797	USB1	100	80.524	MGP_SPRETEiJ_G0032540	Usb1	100	80.524	Mus_spretus
ENSPPRG00000024797	USB1	100	87.361	ENSMPUG00000004684	USB1	96	87.361	Mustela_putorius_furo
ENSPPRG00000024797	USB1	87	91.775	ENSMLUG00000007400	USB1	100	91.775	Myotis_lucifugus
ENSPPRG00000024797	USB1	100	85.130	ENSNGAG00000009703	Usb1	100	85.240	Nannospalax_galili
ENSPPRG00000024797	USB1	86	51.163	ENSNBRG00000008747	usb1	99	51.980	Neolamprologus_brichardi
ENSPPRG00000024797	USB1	100	83.125	ENSNLEG00000003340	USB1	100	85.317	Nomascus_leucogenys
ENSPPRG00000024797	USB1	94	58.974	ENSMEUG00000003328	-	100	58.974	Notamacropus_eugenii
ENSPPRG00000024797	USB1	63	87.879	ENSOPRG00000011803	USB1	72	87.879	Ochotona_princeps
ENSPPRG00000024797	USB1	100	80.150	ENSODEG00000016214	USB1	100	80.150	Octodon_degus
ENSPPRG00000024797	USB1	98	47.687	ENSONIG00000011063	usb1	84	51.282	Oreochromis_niloticus
ENSPPRG00000024797	USB1	87	71.795	ENSOANG00000012118	USB1	97	71.795	Ornithorhynchus_anatinus
ENSPPRG00000024797	USB1	97	44.574	ENSORLG00000012479	usb1	89	45.749	Oryzias_latipes
ENSPPRG00000024797	USB1	93	45.382	ENSORLG00020018671	usb1	90	45.749	Oryzias_latipes_hni
ENSPPRG00000024797	USB1	84	49.107	ENSORLG00015009679	usb1	99	45.725	Oryzias_latipes_hsok
ENSPPRG00000024797	USB1	84	50.000	ENSOMEG00000012930	usb1	99	46.182	Oryzias_melastigma
ENSPPRG00000024797	USB1	100	85.141	ENSOGAG00000003273	USB1	100	85.141	Otolemur_garnettii
ENSPPRG00000024797	USB1	99	80.303	ENSOARG00000001107	USB1	95	84.615	Ovis_aries
ENSPPRG00000024797	USB1	100	85.019	ENSPPAG00000042137	USB1	100	85.019	Pan_paniscus
ENSPPRG00000024797	USB1	100	99.375	ENSPTIG00000007506	USB1	100	99.375	Panthera_tigris_altaica
ENSPPRG00000024797	USB1	100	84.337	ENSPTRG00000008172	USB1	100	89.720	Pan_troglodytes
ENSPPRG00000024797	USB1	100	86.517	ENSPANG00000025138	USB1	100	86.517	Papio_anubis
ENSPPRG00000024797	USB1	98	46.441	ENSPKIG00000015109	usb1	99	47.119	Paramormyrops_kingsleyae
ENSPPRG00000024797	USB1	84	51.082	ENSPSIG00000004305	USB1	100	51.570	Pelodiscus_sinensis
ENSPPRG00000024797	USB1	84	50.222	ENSPMGG00000017725	usb1	86	50.222	Periophthalmus_magnuspinnatus
ENSPPRG00000024797	USB1	100	83.088	ENSPEMG00000016183	Usb1	100	83.824	Peromyscus_maniculatus_bairdii
ENSPPRG00000024797	USB1	84	51.770	ENSPMAG00000000462	usb1	95	51.770	Petromyzon_marinus
ENSPPRG00000024797	USB1	98	47.312	ENSPFOG00000011130	usb1	84	50.000	Poecilia_formosa
ENSPPRG00000024797	USB1	98	46.595	ENSPLAG00000009820	usb1	84	49.145	Poecilia_latipinna
ENSPPRG00000024797	USB1	98	47.312	ENSPMEG00000006402	usb1	84	50.000	Poecilia_mexicana
ENSPPRG00000024797	USB1	97	43.226	ENSPREG00000001047	usb1	81	50.990	Poecilia_reticulata
ENSPPRG00000024797	USB1	95	81.890	ENSPPYG00000007401	USB1	100	81.890	Pongo_abelii
ENSPPRG00000024797	USB1	100	87.640	ENSPCOG00000022612	USB1	100	87.640	Propithecus_coquereli
ENSPPRG00000024797	USB1	100	83.146	ENSPVAG00000004613	USB1	100	83.146	Pteropus_vampyrus
ENSPPRG00000024797	USB1	88	51.709	ENSPNYG00000022262	usb1	83	51.709	Pundamilia_nyererei
ENSPPRG00000024797	USB1	96	47.451	ENSPNAG00000011736	usb1	76	50.893	Pygocentrus_nattereri
ENSPPRG00000024797	USB1	100	82.022	ENSRNOG00000013216	Usb1	100	82.022	Rattus_norvegicus
ENSPPRG00000024797	USB1	100	86.747	ENSRBIG00000044466	USB1	100	91.121	Rhinopithecus_bieti
ENSPPRG00000024797	USB1	100	86.891	ENSRROG00000029211	USB1	100	86.891	Rhinopithecus_roxellana
ENSPPRG00000024797	USB1	100	84.644	ENSSBOG00000029362	USB1	100	84.644	Saimiri_boliviensis_boliviensis
ENSPPRG00000024797	USB1	82	72.146	ENSSHAG00000006993	USB1	99	68.000	Sarcophilus_harrisii
ENSPPRG00000024797	USB1	85	56.388	ENSSFOG00015023663	usb1	71	56.388	Scleropages_formosus
ENSPPRG00000024797	USB1	99	45.714	ENSSMAG00000015834	usb1	86	48.263	Scophthalmus_maximus
ENSPPRG00000024797	USB1	85	53.540	ENSSDUG00000002949	usb1	99	50.365	Seriola_dumerili
ENSPPRG00000024797	USB1	98	48.669	ENSSLDG00000014174	usb1	83	51.709	Seriola_lalandi_dorsalis
ENSPPRG00000024797	USB1	80	65.888	ENSSPUG00000006741	USB1	100	65.888	Sphenodon_punctatus
ENSPPRG00000024797	USB1	98	46.127	ENSSPAG00000007484	usb1	82	50.215	Stegastes_partitus
ENSPPRG00000024797	USB1	100	84.387	ENSSSCG00000002807	USB1	100	84.387	Sus_scrofa
ENSPPRG00000024797	USB1	78	68.421	ENSTGUG00000004792	USB1	99	60.674	Taeniopygia_guttata
ENSPPRG00000024797	USB1	98	46.691	ENSTRUG00000021069	usb1	89	47.347	Takifugu_rubripes
ENSPPRG00000024797	USB1	98	46.388	ENSTNIG00000000626	usb1	98	46.008	Tetraodon_nigroviridis
ENSPPRG00000024797	USB1	87	60.345	ENSTBEG00000001507	USB1	100	60.345	Tupaia_belangeri
ENSPPRG00000024797	USB1	100	88.104	ENSUAMG00000016823	USB1	100	88.476	Ursus_americanus
ENSPPRG00000024797	USB1	80	89.252	ENSUMAG00000021369	USB1	100	89.252	Ursus_maritimus
ENSPPRG00000024797	USB1	94	51.656	ENSVPAG00000009834	-	59	88.333	Vicugna_pacos
ENSPPRG00000024797	USB1	99	87.313	ENSVVUG00000023700	USB1	95	88.163	Vulpes_vulpes
ENSPPRG00000024797	USB1	81	55.505	ENSXETG00000013795	usb1	89	55.605	Xenopus_tropicalis
ENSPPRG00000024797	USB1	97	47.104	ENSXMAG00000024687	usb1	67	50.439	Xiphophorus_maculatus