EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPYG00000000723 (Gene tree)
Gene ID: 100460316
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Pongo_abelii
Status: putative
Strand: Plus strand
Length: 34736 bases
Position: chr1:95213164-95247899
Accession: 100460316
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPYP00000000838	EST1	PF10374.9	3.8e-24	1	1
ENSPPYP00000000838	EST1_DNA_bind	PF10373.9	2.2e-40	1	2
ENSPPYP00000000838	EST1_DNA_bind	PF10373.9	2.2e-40	2	2
ENSPPYP00000000838	PIN_4	PF13638.6	1.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPYT00000000869	SMG5-201	3570	-	ENSPPYP00000000838	1016 (aa)	XP_002810073	H2N5E2

Gene Model

Click here to download ENSPPYG00000000723's gene model file

Pathways

Pathway ID	Pathway Name	Source
pon03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPYG00000000723's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPYG00000000723	SMG5	100	99.508	ENSG00000198952	SMG5	100	99.508	Homo_sapiens
ENSPPYG00000000723	SMG5	99	67.647	ENSAPOG00000019690	smg5	92	77.103	Acanthochromis_polyacanthus
ENSPPYG00000000723	SMG5	98	92.850	ENSAMEG00000014458	SMG5	100	92.850	Ailuropoda_melanoleuca
ENSPPYG00000000723	SMG5	99	64.943	ENSACIG00000001353	smg5	99	66.667	Amphilophus_citrinellus
ENSPPYG00000000723	SMG5	98	64.729	ENSAOCG00000019483	smg5	93	66.598	Amphiprion_ocellaris
ENSPPYG00000000723	SMG5	98	66.501	ENSAPEG00000022949	smg5	98	66.335	Amphiprion_percula
ENSPPYG00000000723	SMG5	99	65.896	ENSATEG00000005348	smg5	99	67.313	Anabas_testudineus
ENSPPYG00000000723	SMG5	98	79.122	ENSAPLG00000010263	SMG5	100	78.829	Anas_platyrhynchos
ENSPPYG00000000723	SMG5	100	98.425	ENSANAG00000032899	SMG5	100	98.425	Aotus_nancymaae
ENSPPYG00000000723	SMG5	99	64.587	ENSACLG00000009311	smg5	99	66.121	Astatotilapia_calliptera
ENSPPYG00000000723	SMG5	99	44.294	ENSBTAG00000021747	-	99	43.424	Bos_taurus
ENSPPYG00000000723	SMG5	100	96.063	ENSBTAG00000009435	SMG5	100	96.063	Bos_taurus
ENSPPYG00000000723	SMG5	100	98.425	ENSCJAG00000005684	SMG5	100	98.425	Callithrix_jacchus
ENSPPYG00000000723	SMG5	100	94.587	ENSCAFG00000016839	SMG5	100	93.898	Canis_familiaris
ENSPPYG00000000723	SMG5	100	94.587	ENSCAFG00020006061	SMG5	100	93.898	Canis_lupus_dingo
ENSPPYG00000000723	SMG5	100	95.965	ENSCHIG00000007709	SMG5	100	95.965	Capra_hircus
ENSPPYG00000000723	SMG5	99	44.906	ENSCHIG00000006323	-	99	43.555	Capra_hircus
ENSPPYG00000000723	SMG5	100	97.148	ENSTSYG00000004099	SMG5	100	97.148	Carlito_syrichta
ENSPPYG00000000723	SMG5	97	74.645	ENSCAPG00000003631	SMG5	100	75.286	Cavia_aperea
ENSPPYG00000000723	SMG5	100	95.972	ENSCPOG00000015696	SMG5	100	95.678	Cavia_porcellus
ENSPPYG00000000723	SMG5	100	98.425	ENSCCAG00000027409	SMG5	100	98.425	Cebus_capucinus
ENSPPYG00000000723	SMG5	100	99.508	ENSCATG00000030539	SMG5	100	99.508	Cercocebus_atys
ENSPPYG00000000723	SMG5	100	96.660	ENSCLAG00000003983	SMG5	100	96.660	Chinchilla_lanigera
ENSPPYG00000000723	SMG5	100	99.409	ENSCSAG00000002120	SMG5	100	99.409	Chlorocebus_sabaeus
ENSPPYG00000000723	SMG5	54	94.161	ENSCHOG00000008741	-	57	94.161	Choloepus_hoffmanni
ENSPPYG00000000723	SMG5	94	79.006	ENSCPBG00000025848	SMG5	100	78.702	Chrysemys_picta_bellii
ENSPPYG00000000723	SMG5	93	35.088	ENSCING00000008706	-	99	35.010	Ciona_intestinalis
ENSPPYG00000000723	SMG5	100	95.177	ENSCANG00000029208	SMG5	100	95.177	Colobus_angolensis_palliatus
ENSPPYG00000000723	SMG5	100	92.731	ENSCGRG00001006336	Smg5	100	92.436	Cricetulus_griseus_chok1gshd
ENSPPYG00000000723	SMG5	98	92.757	ENSCGRG00000005111	Smg5	100	92.447	Cricetulus_griseus_crigri
ENSPPYG00000000723	SMG5	99	65.598	ENSCSEG00000014220	smg5	92	77.778	Cynoglossus_semilaevis
ENSPPYG00000000723	SMG5	99	60.916	ENSCVAG00000000529	smg5	99	61.613	Cyprinodon_variegatus
ENSPPYG00000000723	SMG5	100	92.028	ENSDNOG00000000051	SMG5	100	92.028	Dasypus_novemcinctus
ENSPPYG00000000723	SMG5	92	36.786	ENSDNOG00000039862	-	100	35.344	Dasypus_novemcinctus
ENSPPYG00000000723	SMG5	100	94.303	ENSDORG00000010382	Smg5	100	93.615	Dipodomys_ordii
ENSPPYG00000000723	SMG5	66	35.484	FBgn0019890	Smg5	62	35.484	Drosophila_melanogaster
ENSPPYG00000000723	SMG5	82	97.087	ENSETEG00000010336	SMG5	89	97.087	Echinops_telfairi
ENSPPYG00000000723	SMG5	90	46.709	ENSEBUG00000003739	smg5	98	46.324	Eptatretus_burgeri
ENSPPYG00000000723	SMG5	100	97.146	ENSEASG00005019122	SMG5	100	97.146	Equus_asinus_asinus
ENSPPYG00000000723	SMG5	100	97.146	ENSECAG00000001389	SMG5	100	97.146	Equus_caballus
ENSPPYG00000000723	SMG5	72	98.271	ENSEEUG00000012690	SMG5	73	98.271	Erinaceus_europaeus
ENSPPYG00000000723	SMG5	99	65.255	ENSELUG00000012585	smg5	99	65.159	Esox_lucius
ENSPPYG00000000723	SMG5	100	94.094	ENSFCAG00000011783	SMG5	100	93.314	Felis_catus
ENSPPYG00000000723	SMG5	58	81.970	ENSFALG00000001166	-	99	82.077	Ficedula_albicollis
ENSPPYG00000000723	SMG5	98	93.253	ENSFDAG00000017388	SMG5	100	93.152	Fukomys_damarensis
ENSPPYG00000000723	SMG5	97	62.159	ENSFHEG00000013939	smg5	95	68.301	Fundulus_heteroclitus
ENSPPYG00000000723	SMG5	99	61.194	ENSGMOG00000007310	smg5	92	76.376	Gadus_morhua
ENSPPYG00000000723	SMG5	99	77.810	ENSGALG00000029918	-	100	77.514	Gallus_gallus
ENSPPYG00000000723	SMG5	86	75.566	ENSGAFG00000021691	smg5	95	67.412	Gambusia_affinis
ENSPPYG00000000723	SMG5	100	79.772	ENSGAGG00000016131	SMG5	100	79.582	Gopherus_agassizii
ENSPPYG00000000723	SMG5	100	99.606	ENSGGOG00000010932	SMG5	100	99.606	Gorilla_gorilla
ENSPPYG00000000723	SMG5	99	64.306	ENSHBUG00000008654	smg5	99	65.176	Haplochromis_burtoni
ENSPPYG00000000723	SMG5	100	93.124	ENSHGLG00000019152	SMG5	100	93.320	Heterocephalus_glaber_female
ENSPPYG00000000723	SMG5	90	93.209	ENSHGLG00100015948	SMG5	99	93.428	Heterocephalus_glaber_male
ENSPPYG00000000723	SMG5	86	73.350	ENSHCOG00000010229	smg5	83	78.571	Hippocampus_comes
ENSPPYG00000000723	SMG5	99	60.562	ENSIPUG00000006624	Smg5	99	62.078	Ictalurus_punctatus
ENSPPYG00000000723	SMG5	100	96.755	ENSSTOG00000001780	SMG5	100	96.755	Ictidomys_tridecemlineatus
ENSPPYG00000000723	SMG5	100	92.934	ENSJJAG00000022763	Smg5	100	92.738	Jaculus_jaculus
ENSPPYG00000000723	SMG5	50	59.524	ENSKMAG00000014586	smg5	99	61.333	Kryptolebias_marmoratus
ENSPPYG00000000723	SMG5	99	66.313	ENSLBEG00000002145	smg5	92	78.302	Labrus_bergylta
ENSPPYG00000000723	SMG5	100	65.052	ENSLACG00000010521	SMG5	100	64.957	Latimeria_chalumnae
ENSPPYG00000000723	SMG5	96	78.638	ENSLOCG00000008380	smg5	92	78.673	Lepisosteus_oculatus
ENSPPYG00000000723	SMG5	100	94.685	ENSLAFG00000006241	SMG5	100	94.685	Loxodonta_africana
ENSPPYG00000000723	SMG5	100	99.409	ENSMFAG00000045357	SMG5	100	99.409	Macaca_fascicularis
ENSPPYG00000000723	SMG5	100	99.311	ENSMMUG00000000090	SMG5	100	99.311	Macaca_mulatta
ENSPPYG00000000723	SMG5	100	99.311	ENSMNEG00000044425	SMG5	100	99.311	Macaca_nemestrina
ENSPPYG00000000723	SMG5	100	93.137	ENSMLEG00000041192	SMG5	100	93.137	Mandrillus_leucophaeus
ENSPPYG00000000723	SMG5	99	61.017	ENSMAMG00000010683	smg5	58	56.863	Mastacembelus_armatus
ENSPPYG00000000723	SMG5	63	58.709	ENSMZEG00005016543	smg5	100	59.125	Maylandia_zebra
ENSPPYG00000000723	SMG5	99	63.645	ENSMZEG00005015815	smg5	99	64.504	Maylandia_zebra
ENSPPYG00000000723	SMG5	100	91.945	ENSMAUG00000010381	Smg5	100	91.749	Mesocricetus_auratus
ENSPPYG00000000723	SMG5	55	45.534	ENSMAUG00000000043	-	96	44.618	Mesocricetus_auratus
ENSPPYG00000000723	SMG5	100	97.539	ENSMICG00000002257	SMG5	100	97.539	Microcebus_murinus
ENSPPYG00000000723	SMG5	100	91.471	ENSMOCG00000016590	Smg5	100	91.176	Microtus_ochrogaster
ENSPPYG00000000723	SMG5	99	59.127	ENSMMOG00000017199	smg5	99	59.748	Mola_mola
ENSPPYG00000000723	SMG5	97	35.089	ENSMODG00000004511	-	99	34.294	Monodelphis_domestica
ENSPPYG00000000723	SMG5	80	38.407	ENSMODG00000004735	-	86	39.733	Monodelphis_domestica
ENSPPYG00000000723	SMG5	78	37.783	ENSMODG00000010675	-	84	37.931	Monodelphis_domestica
ENSPPYG00000000723	SMG5	87	90.315	ENSMODG00000016901	SMG5	98	90.766	Monodelphis_domestica
ENSPPYG00000000723	SMG5	93	37.317	ENSMODG00000004532	-	83	37.940	Monodelphis_domestica
ENSPPYG00000000723	SMG5	99	60.533	ENSMALG00000010375	smg5	99	59.414	Monopterus_albus
ENSPPYG00000000723	SMG5	100	92.436	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSPPYG00000000723	SMG5	100	92.633	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSPPYG00000000723	SMG5	100	92.247	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSPPYG00000000723	SMG5	100	92.436	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSPPYG00000000723	SMG5	94	93.053	ENSMPUG00000004546	SMG5	100	92.316	Mustela_putorius_furo
ENSPPYG00000000723	SMG5	100	95.890	ENSMLUG00000008518	SMG5	100	95.890	Myotis_lucifugus
ENSPPYG00000000723	SMG5	100	94.100	ENSNGAG00000020706	Smg5	100	93.805	Nannospalax_galili
ENSPPYG00000000723	SMG5	98	44.578	ENSNGAG00000012101	-	98	44.389	Nannospalax_galili
ENSPPYG00000000723	SMG5	97	63.063	ENSNBRG00000004332	smg5	98	65.000	Neolamprologus_brichardi
ENSPPYG00000000723	SMG5	100	99.311	ENSNLEG00000012439	SMG5	100	99.311	Nomascus_leucogenys
ENSPPYG00000000723	SMG5	100	88.299	ENSMEUG00000012834	SMG5	100	87.414	Notamacropus_eugenii
ENSPPYG00000000723	SMG5	100	94.291	ENSOPRG00000009152	SMG5	100	94.291	Ochotona_princeps
ENSPPYG00000000723	SMG5	100	95.965	ENSODEG00000012237	SMG5	100	95.965	Octodon_degus
ENSPPYG00000000723	SMG5	50	59.963	ENSONIG00000008632	smg5	55	55.754	Oreochromis_niloticus
ENSPPYG00000000723	SMG5	98	95.867	ENSOCUG00000012886	SMG5	100	95.867	Oryctolagus_cuniculus
ENSPPYG00000000723	SMG5	89	40.591	ENSOCUG00000023338	-	99	40.481	Oryctolagus_cuniculus
ENSPPYG00000000723	SMG5	91	76.905	ENSORLG00000016239	smg5	99	62.063	Oryzias_latipes
ENSPPYG00000000723	SMG5	99	64.327	ENSORLG00020013127	smg5	99	65.984	Oryzias_latipes_hni
ENSPPYG00000000723	SMG5	99	64.237	ENSORLG00015019014	smg5	99	65.695	Oryzias_latipes_hsok
ENSPPYG00000000723	SMG5	100	95.276	ENSOGAG00000004966	SMG5	100	95.276	Otolemur_garnettii
ENSPPYG00000000723	SMG5	100	96.063	ENSOARG00000005778	SMG5	100	96.063	Ovis_aries
ENSPPYG00000000723	SMG5	99	44.575	ENSOARG00000011963	-	99	43.567	Ovis_aries
ENSPPYG00000000723	SMG5	100	99.508	ENSPPAG00000011996	SMG5	100	99.508	Pan_paniscus
ENSPPYG00000000723	SMG5	98	93.952	ENSPPRG00000011901	SMG5	100	93.145	Panthera_pardus
ENSPPYG00000000723	SMG5	99	85.771	ENSPTIG00000007892	SMG5	98	85.628	Panthera_tigris_altaica
ENSPPYG00000000723	SMG5	100	99.508	ENSPTRG00000023925	SMG5	100	99.508	Pan_troglodytes
ENSPPYG00000000723	SMG5	100	99.508	ENSPTRG00000049282	-	100	99.508	Pan_troglodytes
ENSPPYG00000000723	SMG5	100	99.508	ENSPANG00000011201	SMG5	100	99.508	Papio_anubis
ENSPPYG00000000723	SMG5	99	65.414	ENSPKIG00000009402	smg5	99	65.664	Paramormyrops_kingsleyae
ENSPPYG00000000723	SMG5	98	81.132	ENSPSIG00000015198	SMG5	100	80.773	Pelodiscus_sinensis
ENSPPYG00000000723	SMG5	99	60.422	ENSPMGG00000010465	smg5	99	59.963	Periophthalmus_magnuspinnatus
ENSPPYG00000000723	SMG5	56	46.060	ENSPEMG00000010022	-	95	45.017	Peromyscus_maniculatus_bairdii
ENSPPYG00000000723	SMG5	100	92.927	ENSPEMG00000001819	Smg5	100	92.633	Peromyscus_maniculatus_bairdii
ENSPPYG00000000723	SMG5	99	49.421	ENSPMAG00000000410	smg5	100	49.525	Petromyzon_marinus
ENSPPYG00000000723	SMG5	100	89.784	ENSPCIG00000018938	SMG5	100	90.177	Phascolarctos_cinereus
ENSPPYG00000000723	SMG5	50	60.405	ENSPFOG00000010191	smg5	99	62.266	Poecilia_formosa
ENSPPYG00000000723	SMG5	50	60.482	ENSPLAG00000009332	smg5	99	62.087	Poecilia_latipinna
ENSPPYG00000000723	SMG5	99	65.706	ENSPMEG00000014105	smg5	99	65.322	Poecilia_mexicana
ENSPPYG00000000723	SMG5	93	75.792	ENSPREG00000017713	smg5	99	61.909	Poecilia_reticulata
ENSPPYG00000000723	SMG5	75	97.238	ENSPCAG00000008412	SMG5	88	85.654	Procavia_capensis
ENSPPYG00000000723	SMG5	100	97.441	ENSPCOG00000004741	SMG5	100	97.441	Propithecus_coquereli
ENSPPYG00000000723	SMG5	100	86.220	ENSPVAG00000016748	SMG5	100	86.220	Pteropus_vampyrus
ENSPPYG00000000723	SMG5	93	63.657	ENSPNYG00000013397	smg5	99	61.027	Pundamilia_nyererei
ENSPPYG00000000723	SMG5	100	92.633	ENSRNOG00000019590	Smg5	100	92.338	Rattus_norvegicus
ENSPPYG00000000723	SMG5	100	99.213	ENSRBIG00000027428	SMG5	100	99.213	Rhinopithecus_bieti
ENSPPYG00000000723	SMG5	100	99.114	ENSRROG00000030035	SMG5	100	99.114	Rhinopithecus_roxellana
ENSPPYG00000000723	SMG5	100	98.425	ENSSBOG00000033339	SMG5	100	98.425	Saimiri_boliviensis_boliviensis
ENSPPYG00000000723	SMG5	99	34.198	ENSSHAG00000009572	-	80	42.752	Sarcophilus_harrisii
ENSPPYG00000000723	SMG5	88	40.157	ENSSHAG00000000561	-	87	40.157	Sarcophilus_harrisii
ENSPPYG00000000723	SMG5	98	89.389	ENSSHAG00000014163	SMG5	100	89.790	Sarcophilus_harrisii
ENSPPYG00000000723	SMG5	64	39.766	ENSSHAG00000000935	-	82	40.854	Sarcophilus_harrisii
ENSPPYG00000000723	SMG5	99	66.537	ENSSFOG00015024175	smg5	99	66.439	Scleropages_formosus
ENSPPYG00000000723	SMG5	99	60.870	ENSSMAG00000013059	smg5	99	62.422	Scophthalmus_maximus
ENSPPYG00000000723	SMG5	50	60.145	ENSSDUG00000007122	smg5	92	76.869	Seriola_dumerili
ENSPPYG00000000723	SMG5	97	60.725	ENSSLDG00000011418	smg5	92	77.594	Seriola_lalandi_dorsalis
ENSPPYG00000000723	SMG5	90	81.134	ENSSARG00000012484	SMG5	100	81.134	Sorex_araneus
ENSPPYG00000000723	SMG5	94	77.812	ENSSPUG00000002260	SMG5	100	76.900	Sphenodon_punctatus
ENSPPYG00000000723	SMG5	91	76.581	ENSSPAG00000014266	smg5	99	65.351	Stegastes_partitus
ENSPPYG00000000723	SMG5	99	75.369	ENSSSCG00000039308	-	100	75.567	Sus_scrofa
ENSPPYG00000000723	SMG5	100	97.244	ENSSSCG00000006490	-	100	97.244	Sus_scrofa
ENSPPYG00000000723	SMG5	99	80.811	ENSTGUG00000003748	-	100	80.566	Taeniopygia_guttata
ENSPPYG00000000723	SMG5	99	64.672	ENSTRUG00000012580	smg5	99	64.768	Takifugu_rubripes
ENSPPYG00000000723	SMG5	99	65.310	ENSTNIG00000010303	smg5	99	65.179	Tetraodon_nigroviridis
ENSPPYG00000000723	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSPPYG00000000723	SMG5	100	91.929	ENSTTRG00000001401	SMG5	100	91.929	Tursiops_truncatus
ENSPPYG00000000723	SMG5	100	93.701	ENSUAMG00000013721	SMG5	100	93.012	Ursus_americanus
ENSPPYG00000000723	SMG5	98	89.347	ENSUMAG00000018041	SMG5	97	88.643	Ursus_maritimus
ENSPPYG00000000723	SMG5	98	87.185	ENSVPAG00000009446	SMG5	99	87.185	Vicugna_pacos
ENSPPYG00000000723	SMG5	100	94.488	ENSVVUG00000005887	SMG5	100	93.799	Vulpes_vulpes
ENSPPYG00000000723	SMG5	77	65.952	ENSXETG00000033791	SMG5	99	65.195	Xenopus_tropicalis
ENSPPYG00000000723	SMG5	76	75.339	ENSXCOG00000004379	smg5	95	68.681	Xiphophorus_couchianus
ENSPPYG00000000723	SMG5	93	75.113	ENSXMAG00000013499	smg5	99	65.962	Xiphophorus_maculatus