EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPYG00000004228 (Gene tree)
Gene ID: -
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Pongo_abelii
Status: putative
Strand: Minus strand
Length: 17439 bases
Position: chr12:8001669-8019107
Accession: 604
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPYP00000004820	APOBEC_N	PF08210.11	2.7e-28	1	1
ENSPPYP00000004820	APOBEC_C	PF05240.14	7.7e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPYT00000005010	APOBEC1-201	747	-	ENSPPYP00000004820	248 (aa)	-	H2NGD0

Gene Model

Click here to download ENSPPYG00000004228's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPYG00000004228's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPYG00000004228	APOBEC1	62	42.857	ENSPPYG00000011833	APOBEC3G	60	42.857
ENSPPYG00000004228	APOBEC1	60	33.113	ENSPPYG00000011831	-	77	33.113

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPYG00000004228	APOBEC1	95	95.763	ENSG00000111701	APOBEC1	100	95.763	Homo_sapiens
ENSPPYG00000004228	APOBEC1	93	79.654	ENSAMEG00000007098	APOBEC1	98	79.654	Ailuropoda_melanoleuca
ENSPPYG00000004228	APOBEC1	69	40.351	ENSACAG00000028578	-	93	40.351	Anolis_carolinensis
ENSPPYG00000004228	APOBEC1	100	89.113	ENSANAG00000027743	APOBEC1	100	89.113	Aotus_nancymaae
ENSPPYG00000004228	APOBEC1	95	72.034	ENSBTAG00000014683	APOBEC1	100	72.034	Bos_taurus
ENSPPYG00000004228	APOBEC1	89	86.878	ENSCJAG00000005398	APOBEC1	100	86.878	Callithrix_jacchus
ENSPPYG00000004228	APOBEC1	95	77.542	ENSCAFG00000013901	APOBEC1	100	77.542	Canis_familiaris
ENSPPYG00000004228	APOBEC1	91	76.991	ENSCAFG00020003511	APOBEC1	95	76.991	Canis_lupus_dingo
ENSPPYG00000004228	APOBEC1	93	72.294	ENSCHIG00000011898	APOBEC1	96	72.294	Capra_hircus
ENSPPYG00000004228	APOBEC1	57	82.979	ENSTSYG00000029141	APOBEC1	100	82.979	Carlito_syrichta
ENSPPYG00000004228	APOBEC1	87	67.442	ENSCAPG00000015882	-	100	67.442	Cavia_aperea
ENSPPYG00000004228	APOBEC1	95	66.809	ENSCPOG00000033068	APOBEC1	99	66.809	Cavia_porcellus
ENSPPYG00000004228	APOBEC1	95	90.254	ENSCCAG00000022258	APOBEC1	100	90.254	Cebus_capucinus
ENSPPYG00000004228	APOBEC1	100	94.355	ENSCATG00000021613	APOBEC1	100	94.355	Cercocebus_atys
ENSPPYG00000004228	APOBEC1	93	69.130	ENSCLAG00000014645	APOBEC1	100	69.130	Chinchilla_lanigera
ENSPPYG00000004228	APOBEC1	77	93.717	ENSCSAG00000009817	APOBEC1	100	93.717	Chlorocebus_sabaeus
ENSPPYG00000004228	APOBEC1	73	45.455	ENSCPBG00000017398	-	82	45.455	Chrysemys_picta_bellii
ENSPPYG00000004228	APOBEC1	75	47.340	ENSCPBG00000014328	-	82	47.340	Chrysemys_picta_bellii
ENSPPYG00000004228	APOBEC1	90	37.719	ENSCPBG00000014327	-	86	38.667	Chrysemys_picta_bellii
ENSPPYG00000004228	APOBEC1	79	50.000	ENSCPBG00000014329	-	54	50.000	Chrysemys_picta_bellii
ENSPPYG00000004228	APOBEC1	89	42.667	ENSCPBG00000014331	-	90	42.667	Chrysemys_picta_bellii
ENSPPYG00000004228	APOBEC1	75	46.561	ENSCPBG00000014335	-	77	46.561	Chrysemys_picta_bellii
ENSPPYG00000004228	APOBEC1	93	93.043	ENSCANG00000038359	APOBEC1	100	93.043	Colobus_angolensis_palliatus
ENSPPYG00000004228	APOBEC1	92	70.742	ENSCGRG00001011130	Apobec1	100	70.742	Cricetulus_griseus_chok1gshd
ENSPPYG00000004228	APOBEC1	92	70.742	ENSCGRG00000008644	Apobec1	100	70.742	Cricetulus_griseus_crigri
ENSPPYG00000004228	APOBEC1	95	79.237	ENSDNOG00000010926	APOBEC1	100	79.237	Dasypus_novemcinctus
ENSPPYG00000004228	APOBEC1	86	64.953	ENSDORG00000023717	Apobec1	100	64.953	Dipodomys_ordii
ENSPPYG00000004228	APOBEC1	94	77.872	ENSETEG00000004867	APOBEC1	99	77.872	Echinops_telfairi
ENSPPYG00000004228	APOBEC1	93	80.952	ENSEASG00005015951	APOBEC1	97	80.952	Equus_asinus_asinus
ENSPPYG00000004228	APOBEC1	77	82.199	ENSECAG00000017163	APOBEC1	100	82.199	Equus_caballus
ENSPPYG00000004228	APOBEC1	89	64.706	ENSEEUG00000009112	-	98	64.706	Erinaceus_europaeus
ENSPPYG00000004228	APOBEC1	82	53.431	ENSEEUG00000007530	-	97	53.431	Erinaceus_europaeus
ENSPPYG00000004228	APOBEC1	95	79.661	ENSFCAG00000009350	APOBEC1	100	79.661	Felis_catus
ENSPPYG00000004228	APOBEC1	57	46.479	ENSFALG00000007257	-	70	46.479	Ficedula_albicollis
ENSPPYG00000004228	APOBEC1	84	60.577	ENSFDAG00000018470	APOBEC1	100	60.577	Fukomys_damarensis
ENSPPYG00000004228	APOBEC1	79	42.132	ENSGAGG00000021744	-	77	42.132	Gopherus_agassizii
ENSPPYG00000004228	APOBEC1	76	41.538	ENSGAGG00000021745	-	69	42.347	Gopherus_agassizii
ENSPPYG00000004228	APOBEC1	88	46.119	ENSGAGG00000011837	-	90	50.000	Gopherus_agassizii
ENSPPYG00000004228	APOBEC1	79	45.000	ENSGAGG00000006624	-	70	45.000	Gopherus_agassizii
ENSPPYG00000004228	APOBEC1	65	51.852	ENSGAGG00000004947	-	83	53.383	Gopherus_agassizii
ENSPPYG00000004228	APOBEC1	95	65.678	ENSHGLG00000001495	APOBEC1	100	65.678	Heterocephalus_glaber_female
ENSPPYG00000004228	APOBEC1	95	64.831	ENSHGLG00100002187	APOBEC1	100	64.831	Heterocephalus_glaber_male
ENSPPYG00000004228	APOBEC1	86	65.421	ENSSTOG00000021971	APOBEC1	100	81.633	Ictidomys_tridecemlineatus
ENSPPYG00000004228	APOBEC1	92	73.799	ENSJJAG00000022108	Apobec1	100	73.799	Jaculus_jaculus
ENSPPYG00000004228	APOBEC1	90	77.130	ENSLAFG00000030837	APOBEC1	100	77.130	Loxodonta_africana
ENSPPYG00000004228	APOBEC1	95	94.068	ENSMFAG00000000277	APOBEC1	100	94.241	Macaca_fascicularis
ENSPPYG00000004228	APOBEC1	95	93.644	ENSMNEG00000029670	APOBEC1	100	93.644	Macaca_nemestrina
ENSPPYG00000004228	APOBEC1	95	94.068	ENSMLEG00000036301	APOBEC1	100	94.068	Mandrillus_leucophaeus
ENSPPYG00000004228	APOBEC1	87	70.833	ENSMAUG00000022167	Apobec1	97	70.833	Mesocricetus_auratus
ENSPPYG00000004228	APOBEC1	95	82.203	ENSMICG00000043645	APOBEC1	100	82.203	Microcebus_murinus
ENSPPYG00000004228	APOBEC1	95	66.949	ENSMODG00000018004	APOBEC1	100	66.949	Monodelphis_domestica
ENSPPYG00000004228	APOBEC1	92	70.175	ENSMUSG00000040613	Apobec1	99	70.175	Mus_musculus
ENSPPYG00000004228	APOBEC1	92	68.421	MGP_PahariEiJ_G0022580	-	99	68.421	Mus_pahari
ENSPPYG00000004228	APOBEC1	92	70.175	MGP_SPRETEiJ_G0029857	Apobec1	99	70.175	Mus_spretus
ENSPPYG00000004228	APOBEC1	95	76.271	ENSMPUG00000017532	APOBEC1	100	76.271	Mustela_putorius_furo
ENSPPYG00000004228	APOBEC1	92	71.179	ENSNGAG00000022607	Apobec1	100	71.179	Nannospalax_galili
ENSPPYG00000004228	APOBEC1	95	96.186	ENSNLEG00000005342	APOBEC1	100	96.186	Nomascus_leucogenys
ENSPPYG00000004228	APOBEC1	95	65.678	ENSMEUG00000013406	APOBEC1	100	65.678	Notamacropus_eugenii
ENSPPYG00000004228	APOBEC1	73	62.431	ENSOPRG00000009508	-	100	62.431	Ochotona_princeps
ENSPPYG00000004228	APOBEC1	96	75.210	ENSOCUG00000025736	APOBEC1	89	75.210	Oryctolagus_cuniculus
ENSPPYG00000004228	APOBEC1	93	80.519	ENSOGAG00000026415	APOBEC1	98	80.519	Otolemur_garnettii
ENSPPYG00000004228	APOBEC1	95	71.610	ENSOARG00000002072	APOBEC1	99	71.610	Ovis_aries
ENSPPYG00000004228	APOBEC1	93	87.879	ENSPPAG00000027657	APOBEC1	98	87.879	Pan_paniscus
ENSPPYG00000004228	APOBEC1	95	79.237	ENSPPRG00000012182	APOBEC1	100	79.237	Panthera_pardus
ENSPPYG00000004228	APOBEC1	95	79.237	ENSPTIG00000020280	APOBEC1	100	79.237	Panthera_tigris_altaica
ENSPPYG00000004228	APOBEC1	95	96.186	ENSPTRG00000004614	APOBEC1	100	96.186	Pan_troglodytes
ENSPPYG00000004228	APOBEC1	95	94.068	ENSPANG00000021027	APOBEC1	100	94.068	Papio_anubis
ENSPPYG00000004228	APOBEC1	54	50.450	ENSPSIG00000012791	-	75	50.450	Pelodiscus_sinensis
ENSPPYG00000004228	APOBEC1	94	42.553	ENSPSIG00000012568	-	99	42.553	Pelodiscus_sinensis
ENSPPYG00000004228	APOBEC1	92	69.432	ENSPEMG00000023841	Apobec1	100	69.432	Peromyscus_maniculatus_bairdii
ENSPPYG00000004228	APOBEC1	95	69.068	ENSPCIG00000023973	APOBEC1	100	69.068	Phascolarctos_cinereus
ENSPPYG00000004228	APOBEC1	75	79.679	ENSPCAG00000008733	APOBEC1	100	79.679	Procavia_capensis
ENSPPYG00000004228	APOBEC1	95	80.508	ENSPCOG00000013957	APOBEC1	100	80.508	Propithecus_coquereli
ENSPPYG00000004228	APOBEC1	95	63.559	ENSPVAG00000010709	APOBEC1	100	63.559	Pteropus_vampyrus
ENSPPYG00000004228	APOBEC1	92	68.860	ENSRNOG00000015411	Apobec1	99	68.860	Rattus_norvegicus
ENSPPYG00000004228	APOBEC1	95	93.220	ENSRBIG00000031161	APOBEC1	100	93.220	Rhinopithecus_bieti
ENSPPYG00000004228	APOBEC1	95	92.797	ENSRROG00000033576	APOBEC1	100	92.797	Rhinopithecus_roxellana
ENSPPYG00000004228	APOBEC1	70	90.751	ENSSBOG00000030587	APOBEC1	98	90.751	Saimiri_boliviensis_boliviensis
ENSPPYG00000004228	APOBEC1	92	70.044	ENSSHAG00000008925	APOBEC1	99	70.044	Sarcophilus_harrisii
ENSPPYG00000004228	APOBEC1	53	69.466	ENSSARG00000011972	-	99	69.466	Sorex_araneus
ENSPPYG00000004228	APOBEC1	69	65.116	ENSSARG00000000032	-	100	65.116	Sorex_araneus
ENSPPYG00000004228	APOBEC1	82	41.827	ENSSPUG00000009044	-	79	41.827	Sphenodon_punctatus
ENSPPYG00000004228	APOBEC1	95	77.966	ENSSSCG00000000668	APOBEC1	100	77.966	Sus_scrofa
ENSPPYG00000004228	APOBEC1	58	50.000	ENSTGUG00000013118	-	99	50.000	Taeniopygia_guttata
ENSPPYG00000004228	APOBEC1	89	75.566	ENSTBEG00000010043	APOBEC1	94	75.566	Tupaia_belangeri
ENSPPYG00000004228	APOBEC1	75	77.005	ENSTTRG00000014015	APOBEC1	100	77.005	Tursiops_truncatus
ENSPPYG00000004228	APOBEC1	98	76.033	ENSUAMG00000011636	APOBEC1	99	76.033	Ursus_americanus
ENSPPYG00000004228	APOBEC1	93	79.221	ENSUMAG00000016552	APOBEC1	95	79.221	Ursus_maritimus
ENSPPYG00000004228	APOBEC1	95	73.729	ENSVPAG00000001343	APOBEC1	100	73.729	Vicugna_pacos
ENSPPYG00000004228	APOBEC1	95	78.390	ENSVVUG00000010522	APOBEC1	100	78.390	Vulpes_vulpes