EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPYG00000004279 (Gene tree)
Gene ID: 100431548
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Pongo_abelii
Status: putative
Strand: Minus strand
Length: 24822 bases
Position: chr12:11003890-11028711
Accession: 100431548
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPYP00000004886	CSD	PF00313.22	3.6e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPYT00000005077	YBX3-201	2502	-	ENSPPYP00000004886	371 (aa)	XP_002822965	H2NGJ5

Gene Model

Click here to download ENSPPYG00000004279's gene model file

Pathways

Pathway ID	Pathway Name	Source
pon04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPYG00000004279's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPYG00000004279	YBX3	100	99.462	ENSG00000060138	YBX3	100	99.462	Homo_sapiens
ENSPPYG00000004279	YBX3	96	85.196	ENSAMEG00000009393	YBX3	95	89.706	Ailuropoda_melanoleuca
ENSPPYG00000004279	YBX3	77	65.035	ENSAPLG00000003147	YBX3	100	65.035	Anas_platyrhynchos
ENSPPYG00000004279	YBX3	100	97.035	ENSANAG00000024492	-	100	98.101	Aotus_nancymaae
ENSPPYG00000004279	YBX3	98	86.154	ENSANAG00000033366	-	93	86.154	Aotus_nancymaae
ENSPPYG00000004279	YBX3	100	81.395	ENSBTAG00000009663	YBX3	100	76.744	Bos_taurus
ENSPPYG00000004279	YBX3	100	95.957	ENSCJAG00000021660	-	100	95.957	Callithrix_jacchus
ENSPPYG00000004279	YBX3	77	88.095	ENSCJAG00000033824	-	98	90.541	Callithrix_jacchus
ENSPPYG00000004279	YBX3	78	92.014	ENSCAFG00000013401	YBX3	84	92.884	Canis_familiaris
ENSPPYG00000004279	YBX3	100	87.200	ENSCAFG00020006412	YBX3	100	85.867	Canis_lupus_dingo
ENSPPYG00000004279	YBX3	100	81.395	ENSCHIG00000010863	YBX3	100	80.267	Capra_hircus
ENSPPYG00000004279	YBX3	100	54.717	ENSTSYG00000035821	-	97	79.464	Carlito_syrichta
ENSPPYG00000004279	YBX3	77	94.425	ENSTSYG00000004204	-	88	94.425	Carlito_syrichta
ENSPPYG00000004279	YBX3	77	86.411	ENSCAPG00000015039	YBX3	93	86.411	Cavia_aperea
ENSPPYG00000004279	YBX3	79	87.372	ENSCPOG00000011329	YBX3	86	87.372	Cavia_porcellus
ENSPPYG00000004279	YBX3	100	96.237	ENSCCAG00000016469	YBX3	100	96.237	Cebus_capucinus
ENSPPYG00000004279	YBX3	100	98.123	ENSCATG00000034411	YBX3	100	98.123	Cercocebus_atys
ENSPPYG00000004279	YBX3	77	86.760	ENSCLAG00000016030	YBX3	94	86.760	Chinchilla_lanigera
ENSPPYG00000004279	YBX3	100	98.660	ENSCSAG00000008744	YBX3	100	98.660	Chlorocebus_sabaeus
ENSPPYG00000004279	YBX3	77	82.659	ENSCHOG00000011988	YBX3	77	82.659	Choloepus_hoffmanni
ENSPPYG00000004279	YBX3	78	80.069	ENSCPBG00000014147	YBX3	81	79.181	Chrysemys_picta_bellii
ENSPPYG00000004279	YBX3	85	98.095	ENSCANG00000036801	YBX3	100	98.095	Colobus_angolensis_palliatus
ENSPPYG00000004279	YBX3	100	85.714	ENSCGRG00001016148	Ybx3	100	84.367	Cricetulus_griseus_chok1gshd
ENSPPYG00000004279	YBX3	77	90.411	ENSCGRG00000004563	Ybx3	98	89.041	Cricetulus_griseus_crigri
ENSPPYG00000004279	YBX3	90	80.882	ENSDORG00000009103	Ybx3	81	90.244	Dipodomys_ordii
ENSPPYG00000004279	YBX3	77	84.965	ENSETEG00000002557	YBX3	99	83.803	Echinops_telfairi
ENSPPYG00000004279	YBX3	100	85.984	ENSEASG00005014726	YBX3	97	89.266	Equus_asinus_asinus
ENSPPYG00000004279	YBX3	100	88.949	ENSECAG00000013777	YBX3	100	89.488	Equus_caballus
ENSPPYG00000004279	YBX3	77	91.901	ENSEEUG00000010415	YBX3	100	91.901	Erinaceus_europaeus
ENSPPYG00000004279	YBX3	100	91.979	ENSFCAG00000027748	YBX3	100	93.048	Felis_catus
ENSPPYG00000004279	YBX3	77	66.319	ENSFALG00000003661	YBX3	100	62.500	Ficedula_albicollis
ENSPPYG00000004279	YBX3	77	85.366	ENSFDAG00000021192	YBX3	92	84.321	Fukomys_damarensis
ENSPPYG00000004279	YBX3	93	56.522	ENSGALG00000031890	YBX3	70	97.849	Gallus_gallus
ENSPPYG00000004279	YBX3	78	79.381	ENSGAGG00000017780	YBX3	81	78.840	Gopherus_agassizii
ENSPPYG00000004279	YBX3	100	99.196	ENSGGOG00000001352	YBX3	100	99.196	Gorilla_gorilla
ENSPPYG00000004279	YBX3	81	75.163	ENSHGLG00000014798	-	86	76.094	Heterocephalus_glaber_female
ENSPPYG00000004279	YBX3	74	78.909	ENSHGLG00000015495	-	80	76.000	Heterocephalus_glaber_female
ENSPPYG00000004279	YBX3	54	97.727	ENSHGLG00100003589	YBX3	87	63.415	Heterocephalus_glaber_male
ENSPPYG00000004279	YBX3	93	84.682	ENSSTOG00000032577	-	100	83.288	Ictidomys_tridecemlineatus
ENSPPYG00000004279	YBX3	77	86.063	ENSSTOG00000002108	-	88	86.063	Ictidomys_tridecemlineatus
ENSPPYG00000004279	YBX3	80	68.687	ENSJJAG00000014239	Ybx3	96	85.227	Jaculus_jaculus
ENSPPYG00000004279	YBX3	100	91.375	ENSLAFG00000017247	YBX3	100	91.914	Loxodonta_africana
ENSPPYG00000004279	YBX3	100	98.387	ENSMFAG00000039369	YBX3	100	98.387	Macaca_fascicularis
ENSPPYG00000004279	YBX3	88	98.462	ENSMMUG00000022469	YBX3	100	98.462	Macaca_mulatta
ENSPPYG00000004279	YBX3	100	98.118	ENSMNEG00000045109	YBX3	100	98.118	Macaca_nemestrina
ENSPPYG00000004279	YBX3	92	84.840	ENSMLEG00000033618	YBX3	79	98.258	Mandrillus_leucophaeus
ENSPPYG00000004279	YBX3	77	67.247	ENSMGAG00000014224	YBX3	93	100.000	Meleagris_gallopavo
ENSPPYG00000004279	YBX3	88	88.379	ENSMAUG00000012185	Ybx3	98	85.981	Mesocricetus_auratus
ENSPPYG00000004279	YBX3	100	90.054	ENSMICG00000038002	-	100	91.667	Microcebus_murinus
ENSPPYG00000004279	YBX3	86	75.556	ENSMICG00000031459	-	100	74.286	Microcebus_murinus
ENSPPYG00000004279	YBX3	84	89.068	ENSMOCG00000016291	Ybx3	96	90.847	Microtus_ochrogaster
ENSPPYG00000004279	YBX3	77	82.986	ENSMODG00000018248	YBX3	91	83.681	Monodelphis_domestica
ENSPPYG00000004279	YBX3	100	84.906	MGP_CAROLIEiJ_G0028947	Ybx3	100	83.827	Mus_caroli
ENSPPYG00000004279	YBX3	100	84.906	ENSMUSG00000030189	Ybx3	100	83.827	Mus_musculus
ENSPPYG00000004279	YBX3	100	85.445	MGP_PahariEiJ_G0022709	Ybx3	100	84.367	Mus_pahari
ENSPPYG00000004279	YBX3	100	85.175	MGP_SPRETEiJ_G0029994	Ybx3	100	84.097	Mus_spretus
ENSPPYG00000004279	YBX3	100	79.265	ENSMPUG00000011810	YBX3	100	78.740	Mustela_putorius_furo
ENSPPYG00000004279	YBX3	71	92.937	ENSMLUG00000007476	YBX3	100	91.450	Myotis_lucifugus
ENSPPYG00000004279	YBX3	80	85.522	ENSNGAG00000000710	Ybx3	91	61.279	Nannospalax_galili
ENSPPYG00000004279	YBX3	96	93.803	ENSNLEG00000034844	YBX3	100	93.803	Nomascus_leucogenys
ENSPPYG00000004279	YBX3	82	80.592	ENSODEG00000017957	YBX3	94	81.308	Octodon_degus
ENSPPYG00000004279	YBX3	80	87.119	ENSOCUG00000001889	YBX3	85	86.780	Oryctolagus_cuniculus
ENSPPYG00000004279	YBX3	100	89.446	ENSOGAG00000013245	YBX3	100	89.182	Otolemur_garnettii
ENSPPYG00000004279	YBX3	80	77.926	ENSOARG00000020919	YBX3	99	82.155	Ovis_aries
ENSPPYG00000004279	YBX3	100	92.204	ENSPPAG00000039068	YBX3	100	92.204	Pan_paniscus
ENSPPYG00000004279	YBX3	100	91.711	ENSPPRG00000005859	YBX3	100	92.781	Panthera_pardus
ENSPPYG00000004279	YBX3	77	92.632	ENSPTIG00000005322	YBX3	81	91.986	Panthera_tigris_altaica
ENSPPYG00000004279	YBX3	100	98.930	ENSPTRG00000004681	YBX3	100	98.930	Pan_troglodytes
ENSPPYG00000004279	YBX3	100	98.387	ENSPANG00000010280	YBX3	100	98.387	Papio_anubis
ENSPPYG00000004279	YBX3	57	99.038	ENSPSIG00000009247	YBX3	95	100.000	Pelodiscus_sinensis
ENSPPYG00000004279	YBX3	87	88.889	ENSPEMG00000012132	-	99	86.916	Peromyscus_maniculatus_bairdii
ENSPPYG00000004279	YBX3	62	91.525	ENSPEMG00000010391	-	85	65.763	Peromyscus_maniculatus_bairdii
ENSPPYG00000004279	YBX3	70	81.154	ENSPCIG00000029949	YBX3	100	79.231	Phascolarctos_cinereus
ENSPPYG00000004279	YBX3	78	89.003	ENSPCAG00000001397	YBX3	98	90.559	Procavia_capensis
ENSPPYG00000004279	YBX3	100	78.667	ENSPVAG00000006740	YBX3	100	78.667	Pteropus_vampyrus
ENSPPYG00000004279	YBX3	100	85.984	ENSRNOG00000005480	Ybx3	100	84.636	Rattus_norvegicus
ENSPPYG00000004279	YBX3	100	98.113	ENSRBIG00000039208	YBX3	100	98.113	Rhinopithecus_bieti
ENSPPYG00000004279	YBX3	100	98.383	ENSRROG00000029638	YBX3	100	98.383	Rhinopithecus_roxellana
ENSPPYG00000004279	YBX3	92	87.172	ENSSBOG00000030573	YBX3	87	95.254	Saimiri_boliviensis_boliviensis
ENSPPYG00000004279	YBX3	77	80.412	ENSSHAG00000003262	YBX3	98	80.412	Sarcophilus_harrisii
ENSPPYG00000004279	YBX3	100	87.927	ENSSSCG00000000633	YBX3	100	89.501	Sus_scrofa
ENSPPYG00000004279	YBX3	100	86.523	ENSTBEG00000012570	YBX3	100	81.941	Tupaia_belangeri
ENSPPYG00000004279	YBX3	71	84.211	ENSTTRG00000008045	YBX3	100	84.211	Tursiops_truncatus
ENSPPYG00000004279	YBX3	75	87.770	ENSUAMG00000016662	YBX3	100	88.129	Ursus_americanus
ENSPPYG00000004279	YBX3	77	91.228	ENSUMAG00000016118	YBX3	94	91.289	Ursus_maritimus
ENSPPYG00000004279	YBX3	77	71.626	ENSVPAG00000000876	YBX3	100	72.183	Vicugna_pacos
ENSPPYG00000004279	YBX3	75	88.129	ENSVVUG00000004956	YBX3	100	88.849	Vulpes_vulpes
ENSPPYG00000004279	YBX3	53	92.222	ENSXETG00000016239	ybx3	92	55.333	Xenopus_tropicalis