EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPPYG00000004756 (Gene tree)
Gene ID
100174771
Gene Symbol
CPSF6
Alias
CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7
Full Name
cleavage and polyadenylation specific factor 6
Gene Type
protein_coding
Species
Pongo_abelii
Status
putative
Strand
Plus strand
Length
34770 bases
Position
chr12:69495406-69530175
Accession
100174771
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPPYP00000005418RRM_1PF00076.226.5e-0711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPPYT00000005629CPSF6-2016611XM_009248015ENSPPYP00000005418551 (aa)XP_009246290H2NI04
Gene Model
Click here to download ENSPPYG00000004756's gene model file
Pathways
Pathway IDPathway NameSource
pon03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPPYG00000004756's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPPYG00000004756CPSF66554.872ENSPPYG00000003188CPSF77155.429
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPPYG00000004756CPSF67057.246ENSG00000149532CPSF79654.598Homo_sapiens
ENSPPYG00000004756CPSF610099.819ENSG00000111605CPSF610099.819Homo_sapiens
ENSPPYG00000004756CPSF610097.288ENSAMEG00000011781CPSF610097.288Ailuropoda_melanoleuca
ENSPPYG00000004756CPSF66639.698ENSAOCG00000012357CPSF77342.169Amphiprion_ocellaris
ENSPPYG00000004756CPSF65295.423ENSACAG00000004381CPSF65395.423Anolis_carolinensis
ENSPPYG00000004756CPSF69799.812ENSANAG00000019240CPSF69999.812Aotus_nancymaae
ENSPPYG00000004756CPSF66450.249ENSANAG00000024635CPSF76950.276Aotus_nancymaae
ENSPPYG00000004756CPSF66290.419ENSAMXG00000016745CPSF67589.091Astyanax_mexicanus
ENSPPYG00000004756CPSF610099.819ENSBTAG00000007323CPSF610099.819Bos_taurus
ENSPPYG00000004756CPSF66555.385ENSBTAG00000015263CPSF77155.429Bos_taurus
ENSPPYG00000004756CPSF610099.819ENSCJAG00000001798CPSF610099.819Callithrix_jacchus
ENSPPYG00000004756CPSF66854.872ENSCJAG00000019282CPSF78454.857Callithrix_jacchus
ENSPPYG00000004756CPSF69799.069ENSCAFG00000000424CPSF610097.561Canis_familiaris
ENSPPYG00000004756CPSF66555.385ENSCAFG00000016152CPSF77156.000Canis_familiaris
ENSPPYG00000004756CPSF66555.385ENSCAFG00020012753CPSF77156.000Canis_lupus_dingo
ENSPPYG00000004756CPSF610099.819ENSCAFG00020016950CPSF610099.819Canis_lupus_dingo
ENSPPYG00000004756CPSF66555.385ENSCHIG00000014655CPSF77155.429Capra_hircus
ENSPPYG00000004756CPSF610099.819ENSCHIG00000010792CPSF610099.819Capra_hircus
ENSPPYG00000004756CPSF69699.812ENSTSYG00000008591CPSF69699.812Carlito_syrichta
ENSPPYG00000004756CPSF66555.385ENSTSYG00000010138-7156.000Carlito_syrichta
ENSPPYG00000004756CPSF66155.385ENSCAPG00000006384CPSF77056.000Cavia_aperea
ENSPPYG00000004756CPSF610099.637ENSCPOG00000015201CPSF610099.637Cavia_porcellus
ENSPPYG00000004756CPSF66555.385ENSCPOG00000009980CPSF77156.000Cavia_porcellus
ENSPPYG00000004756CPSF66554.872ENSCCAG00000032367CPSF77155.429Cebus_capucinus
ENSPPYG00000004756CPSF610099.819ENSCCAG00000028149CPSF610099.819Cebus_capucinus
ENSPPYG00000004756CPSF66854.872ENSCATG00000042801CPSF77755.429Cercocebus_atys
ENSPPYG00000004756CPSF610099.819ENSCATG00000039288CPSF610099.819Cercocebus_atys
ENSPPYG00000004756CPSF69799.436ENSCLAG00000010149CPSF610099.623Chinchilla_lanigera
ENSPPYG00000004756CPSF66555.385ENSCLAG00000003174CPSF77155.429Chinchilla_lanigera
ENSPPYG00000004756CPSF66854.872ENSCSAG00000006414CPSF77755.429Chlorocebus_sabaeus
ENSPPYG00000004756CPSF610093.537ENSCSAG00000004232CPSF610093.537Chlorocebus_sabaeus
ENSPPYG00000004756CPSF610097.822ENSCPBG00000013322CPSF610097.822Chrysemys_picta_bellii
ENSPPYG00000004756CPSF65757.746ENSCSAVG00000000161-7052.023Ciona_savignyi
ENSPPYG00000004756CPSF69699.812ENSCANG00000037294CPSF610099.812Colobus_angolensis_palliatus
ENSPPYG00000004756CPSF610099.638ENSCGRG00001018082Cpsf610099.638Cricetulus_griseus_chok1gshd
ENSPPYG00000004756CPSF69997.623ENSCGRG00000016909Cpsf610099.624Cricetulus_griseus_crigri
ENSPPYG00000004756CPSF69481.071ENSCSEG00000008967cpsf69482.792Cynoglossus_semilaevis
ENSPPYG00000004756CPSF65143.299ENSCSEG00000001956CPSF75746.154Cynoglossus_semilaevis
ENSPPYG00000004756CPSF67035.874ENSCVAG00000007392CPSF75245.745Cyprinodon_variegatus
ENSPPYG00000004756CPSF69477.438ENSCVAG00000014857cpsf69479.541Cyprinodon_variegatus
ENSPPYG00000004756CPSF65180.142ENSDARG00000018618cpsf65280.142Danio_rerio
ENSPPYG00000004756CPSF610099.275ENSDNOG00000015292CPSF610099.275Dasypus_novemcinctus
ENSPPYG00000004756CPSF66555.385ENSDNOG00000018517CPSF78455.429Dasypus_novemcinctus
ENSPPYG00000004756CPSF69699.624ENSDORG00000002950Cpsf69899.624Dipodomys_ordii
ENSPPYG00000004756CPSF610086.395ENSETEG00000002097CPSF610086.395Echinops_telfairi
ENSPPYG00000004756CPSF66554.688ENSETEG00000003765CPSF77156.725Echinops_telfairi
ENSPPYG00000004756CPSF66555.385ENSEASG00005008196CPSF77156.000Equus_asinus_asinus
ENSPPYG00000004756CPSF610099.819ENSEASG00005008066CPSF610099.819Equus_asinus_asinus
ENSPPYG00000004756CPSF67653.297ENSECAG00000018521CPSF79155.429Equus_caballus
ENSPPYG00000004756CPSF610099.819ENSECAG00000015988CPSF610099.819Equus_caballus
ENSPPYG00000004756CPSF69692.606ENSEEUG00000015039CPSF610092.606Erinaceus_europaeus
ENSPPYG00000004756CPSF6100100.000ENSFCAG00000002855CPSF6100100.000Felis_catus
ENSPPYG00000004756CPSF67653.297ENSFCAG00000013677CPSF79155.429Felis_catus
ENSPPYG00000004756CPSF69797.936ENSFALG00000010157CPSF610097.936Ficedula_albicollis
ENSPPYG00000004756CPSF66453.763ENSFALG00000011927CPSF77656.395Ficedula_albicollis
ENSPPYG00000004756CPSF69541.651ENSFDAG00000003919CPSF77156.000Fukomys_damarensis
ENSPPYG00000004756CPSF69997.086ENSFDAG00000002281CPSF69997.086Fukomys_damarensis
ENSPPYG00000004756CPSF69474.410ENSFHEG00000019693cpsf69577.314Fundulus_heteroclitus
ENSPPYG00000004756CPSF65393.333ENSGMOG00000012951cpsf65392.500Gadus_morhua
ENSPPYG00000004756CPSF66555.959ENSGALG00000040962CPSF76356.647Gallus_gallus
ENSPPYG00000004756CPSF610097.822ENSGAGG00000010228CPSF610097.822Gopherus_agassizii
ENSPPYG00000004756CPSF610099.638ENSGGOG00000008211CPSF610099.638Gorilla_gorilla
ENSPPYG00000004756CPSF66855.897ENSHGLG00000019090-7756.000Heterocephalus_glaber_female
ENSPPYG00000004756CPSF610099.637ENSHGLG00000000792CPSF610099.637Heterocephalus_glaber_female
ENSPPYG00000004756CPSF69996.909ENSHGLG00100013861CPSF610099.623Heterocephalus_glaber_male
ENSPPYG00000004756CPSF66855.897ENSHGLG00100013933-7856.000Heterocephalus_glaber_male
ENSPPYG00000004756CPSF65174.737ENSHCOG00000014555cpsf65174.386Hippocampus_comes
ENSPPYG00000004756CPSF69699.812ENSSTOG00000014133CPSF610099.812Ictidomys_tridecemlineatus
ENSPPYG00000004756CPSF66555.385ENSSTOG00000007708CPSF77156.000Ictidomys_tridecemlineatus
ENSPPYG00000004756CPSF69799.437ENSJJAG00000014647Cpsf69999.437Jaculus_jaculus
ENSPPYG00000004756CPSF66855.385ENSJJAG00000019390Cpsf77756.000Jaculus_jaculus
ENSPPYG00000004756CPSF68240.341ENSLBEG00000000947CPSF78533.010Labrus_bergylta
ENSPPYG00000004756CPSF66344.304ENSLACG00000005542CPSF77044.304Latimeria_chalumnae
ENSPPYG00000004756CPSF69493.090ENSLACG00000008625CPSF69493.282Latimeria_chalumnae
ENSPPYG00000004756CPSF66692.353ENSLOCG00000016190cpsf66792.353Lepisosteus_oculatus
ENSPPYG00000004756CPSF610099.819ENSLAFG00000030413CPSF610099.819Loxodonta_africana
ENSPPYG00000004756CPSF66555.897ENSLAFG00000032084CPSF77156.571Loxodonta_africana
ENSPPYG00000004756CPSF66554.872ENSMFAG00000001401CPSF77155.429Macaca_fascicularis
ENSPPYG00000004756CPSF610099.819ENSMFAG00000045318CPSF610099.819Macaca_fascicularis
ENSPPYG00000004756CPSF610099.638ENSMMUG00000002921CPSF610099.638Macaca_mulatta
ENSPPYG00000004756CPSF66854.872ENSMMUG00000015280CPSF77755.429Macaca_mulatta
ENSPPYG00000004756CPSF610099.819ENSMNEG00000036311CPSF610099.819Macaca_nemestrina
ENSPPYG00000004756CPSF66854.872ENSMNEG00000029585CPSF77755.429Macaca_nemestrina
ENSPPYG00000004756CPSF69699.812ENSMLEG00000003957CPSF610099.812Mandrillus_leucophaeus
ENSPPYG00000004756CPSF66554.872ENSMLEG00000031269CPSF76955.429Mandrillus_leucophaeus
ENSPPYG00000004756CPSF69992.844ENSMGAG00000010552CPSF69992.844Meleagris_gallopavo
ENSPPYG00000004756CPSF610099.819ENSMAUG00000013240Cpsf610099.819Mesocricetus_auratus
ENSPPYG00000004756CPSF66555.385ENSMAUG00000013020Cpsf77156.000Mesocricetus_auratus
ENSPPYG00000004756CPSF66555.385ENSMICG00000013788CPSF77156.000Microcebus_murinus
ENSPPYG00000004756CPSF610099.638ENSMICG00000007385-10099.638Microcebus_murinus
ENSPPYG00000004756CPSF66555.385ENSMOCG00000000072Cpsf77156.000Microtus_ochrogaster
ENSPPYG00000004756CPSF610099.638ENSMOCG00000013982Cpsf610099.638Microtus_ochrogaster
ENSPPYG00000004756CPSF66552.284ENSMODG00000020364CPSF77256.250Monodelphis_domestica
ENSPPYG00000004756CPSF610099.093ENSMODG00000007123CPSF610099.093Monodelphis_domestica
ENSPPYG00000004756CPSF67490.155ENSMALG00000014908cpsf67891.525Monopterus_albus
ENSPPYG00000004756CPSF610099.819MGP_CAROLIEiJ_G0015834Cpsf610099.819Mus_caroli
ENSPPYG00000004756CPSF66555.385MGP_CAROLIEiJ_G0022690Cpsf77156.000Mus_caroli
ENSPPYG00000004756CPSF66555.385ENSMUSG00000034820Cpsf77156.000Mus_musculus
ENSPPYG00000004756CPSF610099.456ENSMUSG00000055531Cpsf610099.456Mus_musculus
ENSPPYG00000004756CPSF68199.296MGP_PahariEiJ_G0031253Cpsf68799.095Mus_pahari
ENSPPYG00000004756CPSF66555.385MGP_PahariEiJ_G0014184Cpsf77156.000Mus_pahari
ENSPPYG00000004756CPSF66555.385MGP_SPRETEiJ_G0023604Cpsf77156.000Mus_spretus
ENSPPYG00000004756CPSF610099.456MGP_SPRETEiJ_G0016657Cpsf610099.456Mus_spretus
ENSPPYG00000004756CPSF610094.928ENSMPUG00000017502CPSF610094.928Mustela_putorius_furo
ENSPPYG00000004756CPSF66154.359ENSMPUG00000014163CPSF76654.857Mustela_putorius_furo
ENSPPYG00000004756CPSF69995.446ENSMLUG00000004172-10095.446Myotis_lucifugus
ENSPPYG00000004756CPSF66855.385ENSMLUG00000013278CPSF77756.000Myotis_lucifugus
ENSPPYG00000004756CPSF66894.928ENSMLUG00000028728-9394.931Myotis_lucifugus
ENSPPYG00000004756CPSF66555.385ENSNGAG00000005031Cpsf77156.000Nannospalax_galili
ENSPPYG00000004756CPSF610099.638ENSNGAG00000015901Cpsf610099.638Nannospalax_galili
ENSPPYG00000004756CPSF66554.872ENSNLEG00000002529CPSF76555.429Nomascus_leucogenys
ENSPPYG00000004756CPSF610099.819ENSNLEG00000003798CPSF610099.819Nomascus_leucogenys
ENSPPYG00000004756CPSF610090.136ENSMEUG00000015041CPSF69984.185Notamacropus_eugenii
ENSPPYG00000004756CPSF66553.571ENSMEUG00000002261CPSF77155.814Notamacropus_eugenii
ENSPPYG00000004756CPSF69692.958ENSOPRG00000005199CPSF610092.958Ochotona_princeps
ENSPPYG00000004756CPSF671100.000ENSODEG00000004418-79100.000Octodon_degus
ENSPPYG00000004756CPSF610097.645ENSODEG00000018399-10097.645Octodon_degus
ENSPPYG00000004756CPSF66553.030ENSODEG00000002610CPSF77155.618Octodon_degus
ENSPPYG00000004756CPSF69180.318ENSOANG00000005944CPSF65087.594Ornithorhynchus_anatinus
ENSPPYG00000004756CPSF610093.537ENSOCUG00000013505CPSF610093.537Oryctolagus_cuniculus
ENSPPYG00000004756CPSF69942.059ENSOCUG00000024726CPSF77155.429Oryctolagus_cuniculus
ENSPPYG00000004756CPSF67635.931ENSORLG00000006495CPSF76343.939Oryzias_latipes
ENSPPYG00000004756CPSF69482.857ENSORLG00000013893cpsf69480.952Oryzias_latipes
ENSPPYG00000004756CPSF69482.857ENSORLG00020016593cpsf69480.952Oryzias_latipes_hni
ENSPPYG00000004756CPSF67536.087ENSORLG00020012657CPSF76641.667Oryzias_latipes_hni
ENSPPYG00000004756CPSF67635.931ENSORLG00015011091CPSF76343.939Oryzias_latipes_hsok
ENSPPYG00000004756CPSF69482.857ENSORLG00015015558cpsf69480.952Oryzias_latipes_hsok
ENSPPYG00000004756CPSF67236.797ENSOMEG00000000539CPSF77838.235Oryzias_melastigma
ENSPPYG00000004756CPSF69797.186ENSOGAG00000031988CPSF610097.186Otolemur_garnettii
ENSPPYG00000004756CPSF66555.385ENSOGAG00000027958CPSF76656.000Otolemur_garnettii
ENSPPYG00000004756CPSF66555.385ENSOARG00000012937CPSF76455.429Ovis_aries
ENSPPYG00000004756CPSF69792.995ENSOARG00000020532CPSF610092.995Ovis_aries
ENSPPYG00000004756CPSF66554.872ENSPPAG00000028232CPSF77055.429Pan_paniscus
ENSPPYG00000004756CPSF69540.590ENSPPRG00000008538CPSF77156.000Panthera_pardus
ENSPPYG00000004756CPSF6100100.000ENSPPRG00000021620CPSF6100100.000Panthera_pardus
ENSPPYG00000004756CPSF691100.000ENSPTIG00000004079CPSF6100100.000Panthera_tigris_altaica
ENSPPYG00000004756CPSF66555.385ENSPTIG00000021699CPSF77156.000Panthera_tigris_altaica
ENSPPYG00000004756CPSF610099.638ENSPTRG00000005205CPSF610099.638Pan_troglodytes
ENSPPYG00000004756CPSF66554.872ENSPTRG00000003742CPSF77155.429Pan_troglodytes
ENSPPYG00000004756CPSF66554.872ENSPANG00000006037CPSF76855.429Papio_anubis
ENSPPYG00000004756CPSF610099.819ENSPANG00000011641CPSF610099.819Papio_anubis
ENSPPYG00000004756CPSF69582.375ENSPKIG00000003081-9482.726Paramormyrops_kingsleyae
ENSPPYG00000004756CPSF66047.458ENSPKIG00000018054CPSF77247.205Paramormyrops_kingsleyae
ENSPPYG00000004756CPSF69699.436ENSPEMG00000007973Cpsf610099.436Peromyscus_maniculatus_bairdii
ENSPPYG00000004756CPSF66855.385ENSPEMG00000012648Cpsf77756.000Peromyscus_maniculatus_bairdii
ENSPPYG00000004756CPSF66552.239ENSPCIG00000002551CPSF78455.191Phascolarctos_cinereus
ENSPPYG00000004756CPSF610099.093ENSPCIG00000019063CPSF610099.093Phascolarctos_cinereus
ENSPPYG00000004756CPSF69479.350ENSPLAG00000005715cpsf69481.369Poecilia_latipinna
ENSPPYG00000004756CPSF69479.350ENSPMEG00000001353cpsf69481.369Poecilia_mexicana
ENSPPYG00000004756CPSF65278.472ENSPREG00000004417cpsf65281.690Poecilia_reticulata
ENSPPYG00000004756CPSF610093.537ENSPCAG00000011574CPSF610093.537Procavia_capensis
ENSPPYG00000004756CPSF610099.457ENSPCOG00000024384CPSF610099.457Propithecus_coquereli
ENSPPYG00000004756CPSF66555.385ENSPCOG00000011976CPSF77156.000Propithecus_coquereli
ENSPPYG00000004756CPSF66555.385ENSPVAG00000010675CPSF77156.000Pteropus_vampyrus
ENSPPYG00000004756CPSF65446.497ENSPNAG00000015073CPSF76946.061Pygocentrus_nattereri
ENSPPYG00000004756CPSF65179.930ENSPNAG00000024098CPSF65279.577Pygocentrus_nattereri
ENSPPYG00000004756CPSF610099.637ENSRNOG00000005927Cpsf610099.637Rattus_norvegicus
ENSPPYG00000004756CPSF68754.872ENSRNOG00000020668Cpsf77755.814Rattus_norvegicus
ENSPPYG00000004756CPSF67652.747ENSRBIG00000031429CPSF79154.857Rhinopithecus_bieti
ENSPPYG00000004756CPSF610099.457ENSRBIG00000042827CPSF610099.457Rhinopithecus_bieti
ENSPPYG00000004756CPSF66554.872ENSRROG00000045009CPSF77155.429Rhinopithecus_roxellana
ENSPPYG00000004756CPSF610099.637ENSRROG00000042758CPSF610099.637Rhinopithecus_roxellana
ENSPPYG00000004756CPSF69199.800ENSSBOG00000010652CPSF610099.800Saimiri_boliviensis_boliviensis
ENSPPYG00000004756CPSF66554.872ENSSBOG00000018431CPSF77155.429Saimiri_boliviensis_boliviensis
ENSPPYG00000004756CPSF66254.822ENSSHAG00000011964CPSF76956.395Sarcophilus_harrisii
ENSPPYG00000004756CPSF69583.397ENSSFOG00015015803CPSF69480.880Scleropages_formosus
ENSPPYG00000004756CPSF67042.157ENSSFOG00015010288cpsf77840.000Scleropages_formosus
ENSPPYG00000004756CPSF69579.732ENSSFOG00015001688CPSF68282.184Scleropages_formosus
ENSPPYG00000004756CPSF69498.947ENSSARG00000006743CPSF68898.947Sorex_araneus
ENSPPYG00000004756CPSF66556.250ENSSPUG00000019344CPSF77356.977Sphenodon_punctatus
ENSPPYG00000004756CPSF69492.377ENSSPUG00000001238CPSF610092.784Sphenodon_punctatus
ENSPPYG00000004756CPSF66555.385ENSSSCG00000013083CPSF78455.429Sus_scrofa
ENSPPYG00000004756CPSF610099.819ENSSSCG00000038031CPSF610099.819Sus_scrofa
ENSPPYG00000004756CPSF66251.111ENSTGUG00000006513CPSF77156.322Taeniopygia_guttata
ENSPPYG00000004756CPSF66154.872ENSTTRG00000011085CPSF77056.000Tursiops_truncatus
ENSPPYG00000004756CPSF66555.385ENSUAMG00000017809CPSF77156.000Ursus_americanus
ENSPPYG00000004756CPSF69199.800ENSUAMG00000023492CPSF610099.800Ursus_americanus
ENSPPYG00000004756CPSF69199.800ENSUMAG00000020779CPSF610099.800Ursus_maritimus
ENSPPYG00000004756CPSF66855.385ENSUMAG00000011825CPSF77756.000Ursus_maritimus
ENSPPYG00000004756CPSF69693.310ENSVPAG00000008469CPSF610093.310Vicugna_pacos
ENSPPYG00000004756CPSF66555.385ENSVVUG00000004939CPSF78455.429Vulpes_vulpes
ENSPPYG00000004756CPSF69192.910ENSVVUG00000010156-10092.910Vulpes_vulpes
ENSPPYG00000004756CPSF69741.468ENSXETG00000006715cpsf75445.198Xenopus_tropicalis
ENSPPYG00000004756CPSF65278.472ENSXCOG00000013423cpsf65281.690Xiphophorus_couchianus

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