EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPYG00000005186 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Pongo_abelii
Status: putative
Strand: Minus strand
Length: 82430 bases
Position: chr13:18772606-18855035
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPYP00000023883	RRM_1	PF00076.22	1.5e-32	1	2
ENSPPYP00000023883	RRM_1	PF00076.22	1.5e-32	2	2
ENSPPYP00000005907	RRM_1	PF00076.22	2e-32	1	2
ENSPPYP00000005907	RRM_1	PF00076.22	2e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPYT00000033147	PSPC1-202	1727	-	ENSPPYP00000023883	472 (aa)	-	K7ETL0
ENSPPYT00000006139	PSPC1-201	1566	-	ENSPPYP00000005907	521 (aa)	-	H2NJB9

Gene Model

Click here to download ENSPPYG00000005186's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPYG00000005186's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPYG00000005186	PSPC1	91	59.494	ENSPPYG00000020451	NONO	89	59.914
ENSPPYG00000005186	PSPC1	89	58.511	ENSPPYG00000001560	SFPQ	51	68.579

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPYG00000005186	PSPC1	100	99.235	ENSG00000121390	PSPC1	100	99.235	Homo_sapiens
ENSPPYG00000005186	PSPC1	89	74.408	ENSAPOG00000015946	pspc1	79	73.721	Acanthochromis_polyacanthus
ENSPPYG00000005186	PSPC1	100	98.279	ENSAMEG00000017420	PSPC1	100	98.279	Ailuropoda_melanoleuca
ENSPPYG00000005186	PSPC1	99	56.697	ENSACIG00000018695	pspc1	87	59.236	Amphilophus_citrinellus
ENSPPYG00000005186	PSPC1	85	76.179	ENSAOCG00000005279	pspc1	78	73.256	Amphiprion_ocellaris
ENSPPYG00000005186	PSPC1	85	76.179	ENSAPEG00000015927	pspc1	79	73.256	Amphiprion_percula
ENSPPYG00000005186	PSPC1	89	59.155	ENSATEG00000004878	pspc1	76	61.446	Anabas_testudineus
ENSPPYG00000005186	PSPC1	84	66.085	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSPPYG00000005186	PSPC1	77	93.317	ENSAPLG00000006246	PSPC1	100	93.317	Anas_platyrhynchos
ENSPPYG00000005186	PSPC1	90	52.292	ENSACAG00000013307	-	55	66.102	Anolis_carolinensis
ENSPPYG00000005186	PSPC1	99	82.931	ENSACAG00000002093	PSPC1	88	91.416	Anolis_carolinensis
ENSPPYG00000005186	PSPC1	100	98.088	ENSANAG00000000059	PSPC1	100	98.088	Aotus_nancymaae
ENSPPYG00000005186	PSPC1	99	56.434	ENSACLG00000027220	pspc1	87	58.458	Astatotilapia_calliptera
ENSPPYG00000005186	PSPC1	97	68.776	ENSAMXG00000036881	pspc1	80	72.644	Astyanax_mexicanus
ENSPPYG00000005186	PSPC1	100	95.602	ENSBTAG00000003934	PSPC1	100	94.242	Bos_taurus
ENSPPYG00000005186	PSPC1	100	98.088	ENSCJAG00000004554	PSPC1	100	98.088	Callithrix_jacchus
ENSPPYG00000005186	PSPC1	100	98.279	ENSCAFG00020002009	PSPC1	100	98.279	Canis_lupus_dingo
ENSPPYG00000005186	PSPC1	100	95.602	ENSCHIG00000016708	PSPC1	100	94.242	Capra_hircus
ENSPPYG00000005186	PSPC1	77	91.542	ENSTSYG00000032882	PSPC1	93	85.273	Carlito_syrichta
ENSPPYG00000005186	PSPC1	100	96.558	ENSCPOG00000000395	PSPC1	100	96.558	Cavia_porcellus
ENSPPYG00000005186	PSPC1	100	98.088	ENSCCAG00000033498	PSPC1	100	98.088	Cebus_capucinus
ENSPPYG00000005186	PSPC1	100	98.662	ENSCATG00000036434	PSPC1	100	98.662	Cercocebus_atys
ENSPPYG00000005186	PSPC1	88	87.905	ENSCLAG00000005241	PSPC1	99	87.905	Chinchilla_lanigera
ENSPPYG00000005186	PSPC1	100	91.396	ENSCHOG00000008913	PSPC1	100	90.440	Choloepus_hoffmanni
ENSPPYG00000005186	PSPC1	99	86.832	ENSCPBG00000020859	PSPC1	89	93.991	Chrysemys_picta_bellii
ENSPPYG00000005186	PSPC1	65	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSPPYG00000005186	PSPC1	78	85.679	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSPPYG00000005186	PSPC1	100	96.743	ENSCGRG00001018368	Pspc1	100	96.743	Cricetulus_griseus_chok1gshd
ENSPPYG00000005186	PSPC1	100	96.743	ENSCGRG00000011724	Pspc1	100	96.743	Cricetulus_griseus_crigri
ENSPPYG00000005186	PSPC1	83	70.380	ENSCVAG00000007679	-	78	68.009	Cyprinodon_variegatus
ENSPPYG00000005186	PSPC1	99	66.478	ENSDARG00000006621	pspc1	100	67.633	Danio_rerio
ENSPPYG00000005186	PSPC1	100	96.558	ENSDNOG00000011078	PSPC1	100	96.558	Dasypus_novemcinctus
ENSPPYG00000005186	PSPC1	100	93.881	ENSDORG00000016050	Pspc1	100	93.690	Dipodomys_ordii
ENSPPYG00000005186	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSPPYG00000005186	PSPC1	64	46.154	ENSEBUG00000010133	pspc1	72	51.273	Eptatretus_burgeri
ENSPPYG00000005186	PSPC1	86	65.610	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSPPYG00000005186	PSPC1	100	97.889	ENSEASG00005000119	PSPC1	100	97.889	Equus_asinus_asinus
ENSPPYG00000005186	PSPC1	100	97.889	ENSECAG00000017286	PSPC1	100	97.889	Equus_caballus
ENSPPYG00000005186	PSPC1	88	81.562	ENSEEUG00000011288	-	100	64.491	Erinaceus_europaeus
ENSPPYG00000005186	PSPC1	98	68.277	ENSELUG00000003746	pspc1	78	81.651	Esox_lucius
ENSPPYG00000005186	PSPC1	100	98.279	ENSFCAG00000027841	PSPC1	100	98.279	Felis_catus
ENSPPYG00000005186	PSPC1	89	94.218	ENSFALG00000008750	PSPC1	88	94.421	Ficedula_albicollis
ENSPPYG00000005186	PSPC1	100	94.818	ENSFDAG00000002617	PSPC1	100	94.818	Fukomys_damarensis
ENSPPYG00000005186	PSPC1	84	70.823	ENSGMOG00000015074	pspc1	86	65.443	Gadus_morhua
ENSPPYG00000005186	PSPC1	99	87.262	ENSGALG00000017142	PSPC1	99	87.452	Gallus_gallus
ENSPPYG00000005186	PSPC1	68	78.154	ENSGAFG00000006327	pspc1	67	78.154	Gambusia_affinis
ENSPPYG00000005186	PSPC1	85	69.975	ENSGACG00000014901	pspc1	92	73.414	Gasterosteus_aculeatus
ENSPPYG00000005186	PSPC1	99	86.832	ENSGAGG00000019164	PSPC1	89	93.991	Gopherus_agassizii
ENSPPYG00000005186	PSPC1	89	60.086	ENSGAGG00000017325	-	56	68.306	Gopherus_agassizii
ENSPPYG00000005186	PSPC1	100	99.044	ENSGGOG00000003414	PSPC1	100	99.044	Gorilla_gorilla
ENSPPYG00000005186	PSPC1	97	66.597	ENSHBUG00000001139	pspc1	87	69.313	Haplochromis_burtoni
ENSPPYG00000005186	PSPC1	100	96.750	ENSHGLG00000018811	PSPC1	100	96.750	Heterocephalus_glaber_female
ENSPPYG00000005186	PSPC1	74	92.816	ENSHGLG00100007962	PSPC1	100	92.816	Heterocephalus_glaber_male
ENSPPYG00000005186	PSPC1	80	69.452	ENSHCOG00000013251	pspc1	83	71.658	Hippocampus_comes
ENSPPYG00000005186	PSPC1	97	70.842	ENSIPUG00000013192	pspc1	88	73.461	Ictalurus_punctatus
ENSPPYG00000005186	PSPC1	100	97.514	ENSSTOG00000026833	PSPC1	100	97.514	Ictidomys_tridecemlineatus
ENSPPYG00000005186	PSPC1	100	97.126	ENSJJAG00000018334	Pspc1	100	97.126	Jaculus_jaculus
ENSPPYG00000005186	PSPC1	88	55.292	ENSKMAG00000013525	-	84	53.548	Kryptolebias_marmoratus
ENSPPYG00000005186	PSPC1	93	69.526	ENSLBEG00000004474	pspc1	72	75.510	Labrus_bergylta
ENSPPYG00000005186	PSPC1	99	76.022	ENSLACG00000010762	PSPC1	88	84.914	Latimeria_chalumnae
ENSPPYG00000005186	PSPC1	88	83.948	ENSLOCG00000010832	pspc1	91	83.948	Lepisosteus_oculatus
ENSPPYG00000005186	PSPC1	100	96.935	ENSLAFG00000010968	PSPC1	100	96.935	Loxodonta_africana
ENSPPYG00000005186	PSPC1	100	98.662	ENSMFAG00000032728	PSPC1	100	98.662	Macaca_fascicularis
ENSPPYG00000005186	PSPC1	100	98.734	ENSMMUG00000020262	PSPC1	100	98.734	Macaca_mulatta
ENSPPYG00000005186	PSPC1	100	98.662	ENSMNEG00000027401	PSPC1	100	98.662	Macaca_nemestrina
ENSPPYG00000005186	PSPC1	100	99.248	ENSMLEG00000039043	PSPC1	100	99.248	Mandrillus_leucophaeus
ENSPPYG00000005186	PSPC1	85	73.449	ENSMAMG00000004333	pspc1	77	71.163	Mastacembelus_armatus
ENSPPYG00000005186	PSPC1	99	56.434	ENSMZEG00005005726	pspc1	87	58.458	Maylandia_zebra
ENSPPYG00000005186	PSPC1	78	93.103	ENSMGAG00000015134	PSPC1	100	93.103	Meleagris_gallopavo
ENSPPYG00000005186	PSPC1	98	91.183	ENSMAUG00000021067	Pspc1	100	90.753	Mesocricetus_auratus
ENSPPYG00000005186	PSPC1	100	98.273	ENSMICG00000013970	PSPC1	100	98.927	Microcebus_murinus
ENSPPYG00000005186	PSPC1	100	97.126	ENSMOCG00000006060	Pspc1	100	97.126	Microtus_ochrogaster
ENSPPYG00000005186	PSPC1	73	54.519	ENSMMOG00000004352	pspc1	58	52.923	Mola_mola
ENSPPYG00000005186	PSPC1	97	96.970	ENSMODG00000008029	PSPC1	78	96.289	Monodelphis_domestica
ENSPPYG00000005186	PSPC1	85	72.705	ENSMALG00000008914	pspc1	88	67.164	Monopterus_albus
ENSPPYG00000005186	PSPC1	100	96.941	MGP_CAROLIEiJ_G0019341	Pspc1	100	97.210	Mus_caroli
ENSPPYG00000005186	PSPC1	100	97.132	ENSMUSG00000021938	Pspc1	100	97.425	Mus_musculus
ENSPPYG00000005186	PSPC1	100	96.941	MGP_PahariEiJ_G0030359	Pspc1	100	97.210	Mus_pahari
ENSPPYG00000005186	PSPC1	100	96.941	MGP_SPRETEiJ_G0020232	Pspc1	100	97.210	Mus_spretus
ENSPPYG00000005186	PSPC1	100	98.088	ENSMPUG00000013347	PSPC1	100	98.088	Mustela_putorius_furo
ENSPPYG00000005186	PSPC1	100	96.008	ENSMLUG00000017663	PSPC1	100	96.008	Myotis_lucifugus
ENSPPYG00000005186	PSPC1	100	96.935	ENSNGAG00000011271	Pspc1	100	96.935	Nannospalax_galili
ENSPPYG00000005186	PSPC1	81	63.591	ENSNBRG00000014059	pspc1	76	69.207	Neolamprologus_brichardi
ENSPPYG00000005186	PSPC1	100	98.853	ENSNLEG00000001294	PSPC1	100	98.853	Nomascus_leucogenys
ENSPPYG00000005186	PSPC1	100	75.908	ENSMEUG00000000476	PSPC1	100	75.908	Notamacropus_eugenii
ENSPPYG00000005186	PSPC1	100	85.277	ENSODEG00000007817	-	100	80.076	Octodon_degus
ENSPPYG00000005186	PSPC1	99	86.681	ENSODEG00000019012	-	100	85.824	Octodon_degus
ENSPPYG00000005186	PSPC1	97	66.806	ENSONIG00000012010	pspc1	87	68.432	Oreochromis_niloticus
ENSPPYG00000005186	PSPC1	99	66.348	ENSOANG00000011381	-	99	64.176	Ornithorhynchus_anatinus
ENSPPYG00000005186	PSPC1	77	97.243	ENSOANG00000009017	-	100	97.243	Ornithorhynchus_anatinus
ENSPPYG00000005186	PSPC1	100	97.514	ENSOCUG00000006153	PSPC1	100	97.514	Oryctolagus_cuniculus
ENSPPYG00000005186	PSPC1	84	74.564	ENSORLG00000004232	-	87	63.768	Oryzias_latipes
ENSPPYG00000005186	PSPC1	85	73.449	ENSORLG00020000578	PSPC1	87	64.990	Oryzias_latipes_hni
ENSPPYG00000005186	PSPC1	85	74.690	ENSORLG00015017480	pspc1	82	68.192	Oryzias_latipes_hsok
ENSPPYG00000005186	PSPC1	100	98.279	ENSOGAG00000012643	PSPC1	100	98.279	Otolemur_garnettii
ENSPPYG00000005186	PSPC1	100	91.013	ENSOARG00000014163	PSPC1	100	91.013	Ovis_aries
ENSPPYG00000005186	PSPC1	89	92.688	ENSPPAG00000009836	PSPC1	93	99.695	Pan_paniscus
ENSPPYG00000005186	PSPC1	100	98.279	ENSPPRG00000008833	PSPC1	100	98.279	Panthera_pardus
ENSPPYG00000005186	PSPC1	100	82.726	ENSPTIG00000016917	PSPC1	100	82.726	Panthera_tigris_altaica
ENSPPYG00000005186	PSPC1	97	99.567	ENSPTRG00000005677	PSPC1	99	99.177	Pan_troglodytes
ENSPPYG00000005186	PSPC1	100	98.853	ENSPANG00000001992	PSPC1	100	98.853	Papio_anubis
ENSPPYG00000005186	PSPC1	86	79.703	ENSPKIG00000003578	pspc1	81	77.650	Paramormyrops_kingsleyae
ENSPPYG00000005186	PSPC1	99	86.792	ENSPSIG00000005168	PSPC1	99	86.513	Pelodiscus_sinensis
ENSPPYG00000005186	PSPC1	69	67.278	ENSPMGG00000015135	pspc1	80	73.611	Periophthalmus_magnuspinnatus
ENSPPYG00000005186	PSPC1	100	97.318	ENSPEMG00000015214	Pspc1	100	97.318	Peromyscus_maniculatus_bairdii
ENSPPYG00000005186	PSPC1	54	47.692	ENSPMAG00000004618	pspc1	79	47.692	Petromyzon_marinus
ENSPPYG00000005186	PSPC1	99	96.743	ENSPCIG00000017680	PSPC1	100	96.743	Phascolarctos_cinereus
ENSPPYG00000005186	PSPC1	93	66.402	ENSPFOG00000003362	pspc1	88	67.653	Poecilia_formosa
ENSPPYG00000005186	PSPC1	76	65.097	ENSPLAG00000004407	-	50	61.326	Poecilia_latipinna
ENSPPYG00000005186	PSPC1	96	66.596	ENSPLAG00000011540	pspc1	87	67.653	Poecilia_latipinna
ENSPPYG00000005186	PSPC1	96	66.170	ENSPMEG00000008322	pspc1	87	67.230	Poecilia_mexicana
ENSPPYG00000005186	PSPC1	77	64.674	ENSPMEG00000001025	-	50	61.326	Poecilia_mexicana
ENSPPYG00000005186	PSPC1	96	65.957	ENSPREG00000007786	pspc1	87	67.230	Poecilia_reticulata
ENSPPYG00000005186	PSPC1	66	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSPPYG00000005186	PSPC1	100	93.690	ENSPCOG00000014364	PSPC1	100	93.690	Propithecus_coquereli
ENSPPYG00000005186	PSPC1	100	93.282	ENSPVAG00000005036	PSPC1	100	94.242	Pteropus_vampyrus
ENSPPYG00000005186	PSPC1	99	56.801	ENSPNYG00000008893	pspc1	87	58.458	Pundamilia_nyererei
ENSPPYG00000005186	PSPC1	97	71.030	ENSPNAG00000016511	pspc1	89	72.399	Pygocentrus_nattereri
ENSPPYG00000005186	PSPC1	100	97.318	ENSRNOG00000020782	Pspc1	100	97.318	Rattus_norvegicus
ENSPPYG00000005186	PSPC1	93	98.973	ENSRBIG00000036057	PSPC1	100	98.973	Rhinopithecus_bieti
ENSPPYG00000005186	PSPC1	100	98.853	ENSRROG00000036334	PSPC1	100	98.853	Rhinopithecus_roxellana
ENSPPYG00000005186	PSPC1	79	88.620	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSPPYG00000005186	PSPC1	100	91.429	ENSSHAG00000004696	PSPC1	100	91.238	Sarcophilus_harrisii
ENSPPYG00000005186	PSPC1	85	81.095	ENSSFOG00015001395	pspc1	90	77.829	Scleropages_formosus
ENSPPYG00000005186	PSPC1	92	67.105	ENSSMAG00000001761	pspc1	82	76.970	Scophthalmus_maximus
ENSPPYG00000005186	PSPC1	85	76.427	ENSSDUG00000010651	pspc1	88	67.546	Seriola_dumerili
ENSPPYG00000005186	PSPC1	88	64.286	ENSSLDG00000004284	pspc1	81	61.574	Seriola_lalandi_dorsalis
ENSPPYG00000005186	PSPC1	100	89.060	ENSSARG00000000888	PSPC1	100	89.635	Sorex_araneus
ENSPPYG00000005186	PSPC1	99	75.189	ENSSPUG00000008550	PSPC1	88	81.034	Sphenodon_punctatus
ENSPPYG00000005186	PSPC1	85	58.168	ENSSPUG00000001136	-	53	61.625	Sphenodon_punctatus
ENSPPYG00000005186	PSPC1	85	75.931	ENSSPAG00000001921	pspc1	77	72.791	Stegastes_partitus
ENSPPYG00000005186	PSPC1	100	96.374	ENSSSCG00000009569	PSPC1	100	96.374	Sus_scrofa
ENSPPYG00000005186	PSPC1	89	94.218	ENSTGUG00000011295	PSPC1	99	94.421	Taeniopygia_guttata
ENSPPYG00000005186	PSPC1	95	60.311	ENSTRUG00000011335	pspc1	77	65.693	Takifugu_rubripes
ENSPPYG00000005186	PSPC1	95	61.252	ENSTNIG00000010358	pspc1	86	65.957	Tetraodon_nigroviridis
ENSPPYG00000005186	PSPC1	100	78.119	ENSTBEG00000002361	PSPC1	100	76.200	Tupaia_belangeri
ENSPPYG00000005186	PSPC1	100	96.552	ENSTTRG00000003343	PSPC1	100	96.552	Tursiops_truncatus
ENSPPYG00000005186	PSPC1	74	98.575	ENSUAMG00000012309	PSPC1	100	98.575	Ursus_americanus
ENSPPYG00000005186	PSPC1	93	98.563	ENSUMAG00000013993	PSPC1	100	98.563	Ursus_maritimus
ENSPPYG00000005186	PSPC1	77	98.997	ENSVPAG00000010029	PSPC1	100	98.997	Vicugna_pacos
ENSPPYG00000005186	PSPC1	100	98.279	ENSVVUG00000006414	PSPC1	100	98.705	Vulpes_vulpes
ENSPPYG00000005186	PSPC1	76	71.429	ENSXCOG00000017438	pspc1	77	76.994	Xiphophorus_couchianus
ENSPPYG00000005186	PSPC1	76	71.698	ENSXMAG00000007929	pspc1	77	77.301	Xiphophorus_maculatus