EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPPYG00000005540 (Gene tree)
Gene ID: -
Gene Symbol: LIG4
Alias: DNL4
Full Name: Pongo abelii DNA ligase 4 (LIG4)%2C mRNA.
Gene Type: protein_coding
Species: Pongo_abelii
Status: putative
Strand: Minus strand
Length: 3869 bases
Position: chr13_random:4267958-4271826
Accession: NM_001133050
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPYP00000006314	RNA_ligase	PF09414.10	2.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPYT00000006562	-	3869	XM_024257627	ENSPPYP00000006314	911 (aa)	XP_024113395	H2NKF6

Gene Model

Click here to download ENSPPYG00000005540's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPYG00000005540's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPYG00000005540	LIG4	100	98.244	ENSG00000174405	LIG4	100	98.341	Homo_sapiens
ENSPPYG00000005540	LIG4	99	65.055	ENSAPOG00000000866	lig4	99	65.275	Acanthochromis_polyacanthus
ENSPPYG00000005540	LIG4	100	88.804	ENSAMEG00000019685	LIG4	99	88.804	Ailuropoda_melanoleuca
ENSPPYG00000005540	LIG4	99	65.897	ENSACIG00000018309	lig4	99	66.117	Amphilophus_citrinellus
ENSPPYG00000005540	LIG4	99	65.055	ENSAOCG00000011768	lig4	99	65.275	Amphiprion_ocellaris
ENSPPYG00000005540	LIG4	99	65.165	ENSAPEG00000017815	lig4	99	65.385	Amphiprion_percula
ENSPPYG00000005540	LIG4	99	65.055	ENSATEG00000005583	lig4	99	65.165	Anabas_testudineus
ENSPPYG00000005540	LIG4	97	75.227	ENSAPLG00000001673	LIG4	99	75.227	Anas_platyrhynchos
ENSPPYG00000005540	LIG4	99	76.080	ENSACAG00000014566	LIG4	99	76.080	Anolis_carolinensis
ENSPPYG00000005540	LIG4	100	96.048	ENSANAG00000012446	LIG4	100	96.048	Aotus_nancymaae
ENSPPYG00000005540	LIG4	99	65.237	ENSACLG00000027051	lig4	99	65.237	Astatotilapia_calliptera
ENSPPYG00000005540	LIG4	99	64.114	ENSAMXG00000008192	lig4	94	64.114	Astyanax_mexicanus
ENSPPYG00000005540	LIG4	100	88.804	ENSBTAG00000015868	LIG4	100	88.804	Bos_taurus
ENSPPYG00000005540	LIG4	100	95.499	ENSCJAG00000014689	LIG4	100	95.499	Callithrix_jacchus
ENSPPYG00000005540	LIG4	100	90.560	ENSCAFG00000006031	LIG4	100	90.560	Canis_familiaris
ENSPPYG00000005540	LIG4	100	90.560	ENSCAFG00020021230	LIG4	100	90.560	Canis_lupus_dingo
ENSPPYG00000005540	LIG4	100	88.804	ENSCHIG00000001019	LIG4	100	88.804	Capra_hircus
ENSPPYG00000005540	LIG4	99	87.929	ENSCAPG00000006284	LIG4	99	87.929	Cavia_aperea
ENSPPYG00000005540	LIG4	100	87.925	ENSCPOG00000014266	LIG4	100	87.925	Cavia_porcellus
ENSPPYG00000005540	LIG4	100	95.280	ENSCCAG00000019971	LIG4	100	95.280	Cebus_capucinus
ENSPPYG00000005540	LIG4	100	97.366	ENSCATG00000021075	LIG4	100	97.366	Cercocebus_atys
ENSPPYG00000005540	LIG4	100	89.243	ENSCLAG00000003376	LIG4	100	89.243	Chinchilla_lanigera
ENSPPYG00000005540	LIG4	100	97.475	ENSCSAG00000000211	LIG4	100	97.475	Chlorocebus_sabaeus
ENSPPYG00000005540	LIG4	99	79.470	ENSCPBG00000023291	LIG4	100	78.867	Chrysemys_picta_bellii
ENSPPYG00000005540	LIG4	68	45.469	ENSCING00000009536	-	95	45.469	Ciona_intestinalis
ENSPPYG00000005540	LIG4	83	45.466	ENSCSAVG00000010336	-	98	45.466	Ciona_savignyi
ENSPPYG00000005540	LIG4	100	97.475	ENSCANG00000005805	LIG4	100	97.475	Colobus_angolensis_palliatus
ENSPPYG00000005540	LIG4	100	86.952	ENSCGRG00001012072	Lig4	100	86.952	Cricetulus_griseus_chok1gshd
ENSPPYG00000005540	LIG4	100	86.952	ENSCGRG00000013417	Lig4	100	86.952	Cricetulus_griseus_crigri
ENSPPYG00000005540	LIG4	97	66.591	ENSCSEG00000013905	lig4	95	66.591	Cynoglossus_semilaevis
ENSPPYG00000005540	LIG4	99	65.891	ENSCVAG00000007896	lig4	99	65.891	Cyprinodon_variegatus
ENSPPYG00000005540	LIG4	99	63.898	ENSDARG00000060620	lig4	98	63.898	Danio_rerio
ENSPPYG00000005540	LIG4	100	89.912	ENSDNOG00000000513	LIG4	100	89.912	Dasypus_novemcinctus
ENSPPYG00000005540	LIG4	100	88.694	ENSDORG00000027303	Lig4	100	88.694	Dipodomys_ordii
ENSPPYG00000005540	LIG4	89	30.994	FBgn0030506	Lig4	91	30.994	Drosophila_melanogaster
ENSPPYG00000005540	LIG4	99	84.479	ENSETEG00000015563	LIG4	100	84.812	Echinops_telfairi
ENSPPYG00000005540	LIG4	99	43.337	ENSEBUG00000014243	lig4	99	43.337	Eptatretus_burgeri
ENSPPYG00000005540	LIG4	100	91.109	ENSEASG00005022073	LIG4	100	91.109	Equus_asinus_asinus
ENSPPYG00000005540	LIG4	100	90.670	ENSECAG00000003257	LIG4	100	90.670	Equus_caballus
ENSPPYG00000005540	LIG4	99	66.262	ENSELUG00000006787	lig4	99	66.373	Esox_lucius
ENSPPYG00000005540	LIG4	100	89.682	ENSFCAG00000031985	LIG4	100	89.682	Felis_catus
ENSPPYG00000005540	LIG4	89	75.769	ENSFALG00000004214	LIG4	98	75.769	Ficedula_albicollis
ENSPPYG00000005540	LIG4	100	89.791	ENSFDAG00000008973	LIG4	100	89.791	Fukomys_damarensis
ENSPPYG00000005540	LIG4	99	64.895	ENSFHEG00000007398	lig4	89	64.895	Fundulus_heteroclitus
ENSPPYG00000005540	LIG4	85	64.056	ENSGMOG00000012843	lig4	99	64.056	Gadus_morhua
ENSPPYG00000005540	LIG4	100	74.891	ENSGALG00000016854	LIG4	100	74.891	Gallus_gallus
ENSPPYG00000005540	LIG4	99	64.922	ENSGAFG00000019779	lig4	95	64.835	Gambusia_affinis
ENSPPYG00000005540	LIG4	99	63.123	ENSGACG00000014135	lig4	99	63.123	Gasterosteus_aculeatus
ENSPPYG00000005540	LIG4	100	98.353	ENSGGOG00000027771	LIG4	100	98.353	Gorilla_gorilla
ENSPPYG00000005540	LIG4	99	65.017	ENSHBUG00000006245	lig4	99	65.017	Haplochromis_burtoni
ENSPPYG00000005540	LIG4	100	89.462	ENSHGLG00000000718	LIG4	100	89.462	Heterocephalus_glaber_female
ENSPPYG00000005540	LIG4	100	89.462	ENSHGLG00100003265	LIG4	100	89.462	Heterocephalus_glaber_male
ENSPPYG00000005540	LIG4	99	64.066	ENSHCOG00000012010	lig4	99	64.066	Hippocampus_comes
ENSPPYG00000005540	LIG4	99	65.093	ENSIPUG00000013748	lig4	99	65.093	Ictalurus_punctatus
ENSPPYG00000005540	LIG4	100	90.340	ENSSTOG00000024303	LIG4	100	90.340	Ictidomys_tridecemlineatus
ENSPPYG00000005540	LIG4	100	87.377	ENSJJAG00000006750	Lig4	100	87.377	Jaculus_jaculus
ENSPPYG00000005540	LIG4	99	65.227	ENSKMAG00000001149	lig4	99	65.227	Kryptolebias_marmoratus
ENSPPYG00000005540	LIG4	91	65.865	ENSLBEG00000014578	lig4	100	66.106	Labrus_bergylta
ENSPPYG00000005540	LIG4	99	72.345	ENSLACG00000003282	LIG4	99	72.345	Latimeria_chalumnae
ENSPPYG00000005540	LIG4	99	70.395	ENSLOCG00000008901	lig4	98	70.395	Lepisosteus_oculatus
ENSPPYG00000005540	LIG4	100	87.842	ENSLAFG00000031152	LIG4	100	87.842	Loxodonta_africana
ENSPPYG00000005540	LIG4	100	97.585	ENSMFAG00000037235	LIG4	100	97.585	Macaca_fascicularis
ENSPPYG00000005540	LIG4	100	97.585	ENSMMUG00000008874	LIG4	100	97.585	Macaca_mulatta
ENSPPYG00000005540	LIG4	100	97.585	ENSMNEG00000023575	LIG4	100	97.585	Macaca_nemestrina
ENSPPYG00000005540	LIG4	100	97.366	ENSMLEG00000026720	LIG4	100	97.366	Mandrillus_leucophaeus
ENSPPYG00000005540	LIG4	99	65.495	ENSMAMG00000008472	lig4	99	65.714	Mastacembelus_armatus
ENSPPYG00000005540	LIG4	99	65.237	ENSMZEG00005001855	lig4	99	65.237	Maylandia_zebra
ENSPPYG00000005540	LIG4	99	75.741	ENSMGAG00000015532	LIG4	99	75.741	Meleagris_gallopavo
ENSPPYG00000005540	LIG4	100	84.523	ENSMOCG00000019000	Lig4	100	84.523	Microtus_ochrogaster
ENSPPYG00000005540	LIG4	99	64.895	ENSMMOG00000004390	lig4	99	64.895	Mola_mola
ENSPPYG00000005540	LIG4	100	83.644	ENSMODG00000025064	LIG4	100	84.101	Monodelphis_domestica
ENSPPYG00000005540	LIG4	99	65.338	ENSMALG00000008555	lig4	99	65.338	Monopterus_albus
ENSPPYG00000005540	LIG4	100	86.718	MGP_CAROLIEiJ_G0030809	Lig4	100	86.718	Mus_caroli
ENSPPYG00000005540	LIG4	100	86.718	ENSMUSG00000049717	Lig4	100	86.718	Mus_musculus
ENSPPYG00000005540	LIG4	100	86.718	MGP_PahariEiJ_G0021270	Lig4	100	86.718	Mus_pahari
ENSPPYG00000005540	LIG4	100	86.718	MGP_SPRETEiJ_G0031917	Lig4	100	86.718	Mus_spretus
ENSPPYG00000005540	LIG4	100	88.474	ENSMPUG00000018675	LIG4	100	88.474	Mustela_putorius_furo
ENSPPYG00000005540	LIG4	100	91.438	ENSMLUG00000001267	LIG4	100	91.438	Myotis_lucifugus
ENSPPYG00000005540	LIG4	100	86.608	ENSNGAG00000013258	Lig4	100	86.608	Nannospalax_galili
ENSPPYG00000005540	LIG4	99	65.457	ENSNBRG00000021252	lig4	99	65.457	Neolamprologus_brichardi
ENSPPYG00000005540	LIG4	100	97.585	ENSNLEG00000007888	LIG4	100	97.585	Nomascus_leucogenys
ENSPPYG00000005540	LIG4	100	88.145	ENSOPRG00000005765	LIG4	100	88.145	Ochotona_princeps
ENSPPYG00000005540	LIG4	100	87.596	ENSODEG00000019683	LIG4	100	87.596	Octodon_degus
ENSPPYG00000005540	LIG4	99	65.127	ENSONIG00000011969	lig4	98	65.347	Oreochromis_niloticus
ENSPPYG00000005540	LIG4	100	91.328	ENSOCUG00000015734	LIG4	100	91.328	Oryctolagus_cuniculus
ENSPPYG00000005540	LIG4	99	63.736	ENSORLG00000004041	lig4	99	63.736	Oryzias_latipes
ENSPPYG00000005540	LIG4	99	64.176	ENSORLG00020019607	lig4	99	64.176	Oryzias_latipes_hni
ENSPPYG00000005540	LIG4	99	63.846	ENSORLG00015017754	lig4	99	63.846	Oryzias_latipes_hsok
ENSPPYG00000005540	LIG4	74	69.822	ENSOMEG00000003459	lig4	98	69.822	Oryzias_melastigma
ENSPPYG00000005540	LIG4	100	92.105	ENSOGAG00000032120	LIG4	99	92.105	Otolemur_garnettii
ENSPPYG00000005540	LIG4	82	90.336	ENSOARG00000005590	LIG4	98	90.336	Ovis_aries
ENSPPYG00000005540	LIG4	100	97.805	ENSPPAG00000032998	LIG4	100	97.805	Pan_paniscus
ENSPPYG00000005540	LIG4	100	90.121	ENSPPRG00000017804	LIG4	100	90.121	Panthera_pardus
ENSPPYG00000005540	LIG4	100	90.011	ENSPTIG00000010051	LIG4	100	90.011	Panthera_tigris_altaica
ENSPPYG00000005540	LIG4	100	97.914	ENSPTRG00000006025	LIG4	100	97.914	Pan_troglodytes
ENSPPYG00000005540	LIG4	100	97.475	ENSPANG00000007562	LIG4	100	97.475	Papio_anubis
ENSPPYG00000005540	LIG4	99	66.191	ENSPKIG00000011645	lig4	98	66.191	Paramormyrops_kingsleyae
ENSPPYG00000005540	LIG4	99	78.901	ENSPSIG00000001504	LIG4	99	78.901	Pelodiscus_sinensis
ENSPPYG00000005540	LIG4	99	63.444	ENSPMGG00000013486	lig4	99	63.008	Periophthalmus_magnuspinnatus
ENSPPYG00000005540	LIG4	100	87.061	ENSPEMG00000000076	Lig4	100	87.061	Peromyscus_maniculatus_bairdii
ENSPPYG00000005540	LIG4	100	83.553	ENSPCIG00000021882	LIG4	100	83.553	Phascolarctos_cinereus
ENSPPYG00000005540	LIG4	99	65.072	ENSPFOG00000000797	lig4	99	64.835	Poecilia_formosa
ENSPPYG00000005540	LIG4	99	64.961	ENSPLAG00000001196	lig4	99	64.725	Poecilia_latipinna
ENSPPYG00000005540	LIG4	99	65.072	ENSPMEG00000021353	lig4	99	64.945	Poecilia_mexicana
ENSPPYG00000005540	LIG4	99	64.850	ENSPREG00000007323	lig4	99	64.505	Poecilia_reticulata
ENSPPYG00000005540	LIG4	100	90.560	ENSPVAG00000016403	LIG4	100	90.560	Pteropus_vampyrus
ENSPPYG00000005540	LIG4	99	65.127	ENSPNYG00000009660	lig4	99	65.127	Pundamilia_nyererei
ENSPPYG00000005540	LIG4	100	64.145	ENSPNAG00000028069	LIG4	100	64.145	Pygocentrus_nattereri
ENSPPYG00000005540	LIG4	100	64.145	ENSPNAG00000028056	lig4	100	64.145	Pygocentrus_nattereri
ENSPPYG00000005540	LIG4	100	85.401	ENSRNOG00000014605	Lig4	100	85.401	Rattus_norvegicus
ENSPPYG00000005540	LIG4	100	95.939	ENSRBIG00000039962	LIG4	100	95.939	Rhinopithecus_bieti
ENSPPYG00000005540	LIG4	100	96.926	ENSRROG00000006040	LIG4	100	96.926	Rhinopithecus_roxellana
ENSPPYG00000005540	LIG4	100	94.951	ENSSBOG00000019029	LIG4	100	94.951	Saimiri_boliviensis_boliviensis
ENSPPYG00000005540	LIG4	100	80.132	ENSSHAG00000009525	LIG4	100	80.702	Sarcophilus_harrisii
ENSPPYG00000005540	LIG4	100	65.393	ENSSFOG00015012835	lig4	100	65.393	Scleropages_formosus
ENSPPYG00000005540	LIG4	99	63.344	ENSSMAG00000011267	lig4	99	63.344	Scophthalmus_maximus
ENSPPYG00000005540	LIG4	99	66.630	ENSSDUG00000010343	lig4	98	66.630	Seriola_dumerili
ENSPPYG00000005540	LIG4	99	64.725	ENSSLDG00000003239	lig4	99	64.725	Seriola_lalandi_dorsalis
ENSPPYG00000005540	LIG4	100	83.260	ENSSARG00000006573	LIG4	100	83.260	Sorex_araneus
ENSPPYG00000005540	LIG4	93	77.725	ENSSPUG00000002444	LIG4	100	77.725	Sphenodon_punctatus
ENSPPYG00000005540	LIG4	99	65.165	ENSSPAG00000001609	lig4	99	65.165	Stegastes_partitus
ENSPPYG00000005540	LIG4	100	88.584	ENSSSCG00000009540	LIG4	100	88.584	Sus_scrofa
ENSPPYG00000005540	LIG4	99	75.111	ENSTGUG00000010795	LIG4	99	75.111	Taeniopygia_guttata
ENSPPYG00000005540	LIG4	99	65.055	ENSTRUG00000009984	lig4	99	65.055	Takifugu_rubripes
ENSPPYG00000005540	LIG4	99	64.945	ENSTNIG00000010348	lig4	99	65.275	Tetraodon_nigroviridis
ENSPPYG00000005540	LIG4	100	91.218	ENSTBEG00000017741	LIG4	100	91.218	Tupaia_belangeri
ENSPPYG00000005540	LIG4	100	89.352	ENSTTRG00000012660	LIG4	100	89.352	Tursiops_truncatus
ENSPPYG00000005540	LIG4	100	88.913	ENSUAMG00000003773	LIG4	100	88.913	Ursus_americanus
ENSPPYG00000005540	LIG4	99	72.577	ENSXETG00000002654	lig4	99	72.577	Xenopus_tropicalis
ENSPPYG00000005540	LIG4	99	65.072	ENSXCOG00000017401	lig4	99	64.615	Xiphophorus_couchianus
ENSPPYG00000005540	LIG4	99	65.111	ENSXMAG00000015142	lig4	99	64.654	Xiphophorus_maculatus