EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPPYG00000007790 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Pongo_abelii
Status: putative
Strand: Minus strand
Length: 259369 bases
Position: chr17:1935414-2194782
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPYP00000008776	EST1	PF10374.9	4.1e-15	1	1
ENSPPYP00000008776	EST1_DNA_bind	PF10373.9	2.3e-37	1	1
ENSPPYP00000008776	PIN_4	PF13638.6	4.7e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPYT00000009135	SMG6-201	8601	-	ENSPPYP00000008776	1421 (aa)	-	H2NS69

Gene Model

Click here to download ENSPPYG00000007790's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPYG00000007790's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPYG00000007790	SMG6	100	92.194	ENSG00000070366	SMG6	100	98.374	Homo_sapiens
ENSPPYG00000007790	SMG6	83	51.014	ENSAPOG00000019448	smg6	74	51.328	Acanthochromis_polyacanthus
ENSPPYG00000007790	SMG6	100	88.397	ENSAMEG00000007632	SMG6	100	88.397	Ailuropoda_melanoleuca
ENSPPYG00000007790	SMG6	71	54.703	ENSAOCG00000002630	smg6	74	50.935	Amphiprion_ocellaris
ENSPPYG00000007790	SMG6	71	54.795	ENSAPEG00000019101	smg6	74	51.090	Amphiprion_percula
ENSPPYG00000007790	SMG6	83	51.402	ENSATEG00000006483	smg6	73	50.658	Anabas_testudineus
ENSPPYG00000007790	SMG6	87	52.153	ENSACAG00000011783	SMG6	99	53.323	Anolis_carolinensis
ENSPPYG00000007790	SMG6	100	90.858	ENSANAG00000035760	SMG6	100	90.858	Aotus_nancymaae
ENSPPYG00000007790	SMG6	71	54.771	ENSACLG00000005288	smg6	80	51.400	Astatotilapia_calliptera
ENSPPYG00000007790	SMG6	73	56.345	ENSAMXG00000017326	smg6	99	46.909	Astyanax_mexicanus
ENSPPYG00000007790	SMG6	100	87.764	ENSBTAG00000000267	SMG6	100	87.764	Bos_taurus
ENSPPYG00000007790	SMG6	100	90.295	ENSCJAG00000001820	SMG6	100	90.295	Callithrix_jacchus
ENSPPYG00000007790	SMG6	100	88.397	ENSCAFG00000019260	SMG6	100	88.397	Canis_familiaris
ENSPPYG00000007790	SMG6	100	88.397	ENSCAFG00020009770	SMG6	100	88.397	Canis_lupus_dingo
ENSPPYG00000007790	SMG6	100	87.623	ENSCHIG00000021998	SMG6	100	87.623	Capra_hircus
ENSPPYG00000007790	SMG6	100	88.467	ENSTSYG00000003406	SMG6	100	88.467	Carlito_syrichta
ENSPPYG00000007790	SMG6	98	72.989	ENSCAPG00000016197	SMG6	99	80.468	Cavia_aperea
ENSPPYG00000007790	SMG6	100	86.456	ENSCPOG00000014878	SMG6	100	86.456	Cavia_porcellus
ENSPPYG00000007790	SMG6	100	91.069	ENSCCAG00000035801	SMG6	100	91.069	Cebus_capucinus
ENSPPYG00000007790	SMG6	100	92.124	ENSCATG00000031956	SMG6	100	92.124	Cercocebus_atys
ENSPPYG00000007790	SMG6	100	87.482	ENSCLAG00000006748	SMG6	100	87.482	Chinchilla_lanigera
ENSPPYG00000007790	SMG6	100	92.335	ENSCSAG00000013800	SMG6	100	92.335	Chlorocebus_sabaeus
ENSPPYG00000007790	SMG6	100	66.782	ENSCPBG00000020369	SMG6	100	67.405	Chrysemys_picta_bellii
ENSPPYG00000007790	SMG6	98	92.241	ENSCANG00000031764	SMG6	100	92.241	Colobus_angolensis_palliatus
ENSPPYG00000007790	SMG6	55	85.494	ENSCGRG00001019595	Smg6	100	85.494	Cricetulus_griseus_chok1gshd
ENSPPYG00000007790	SMG6	98	80.288	ENSCGRG00000007782	Smg6	100	80.432	Cricetulus_griseus_crigri
ENSPPYG00000007790	SMG6	86	49.849	ENSCSEG00000012757	smg6	82	49.437	Cynoglossus_semilaevis
ENSPPYG00000007790	SMG6	74	52.056	ENSCVAG00000012789	smg6	74	49.804	Cyprinodon_variegatus
ENSPPYG00000007790	SMG6	100	87.553	ENSDNOG00000048283	SMG6	100	87.553	Dasypus_novemcinctus
ENSPPYG00000007790	SMG6	100	85.273	ENSDORG00000016614	Smg6	100	85.273	Dipodomys_ordii
ENSPPYG00000007790	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSPPYG00000007790	SMG6	74	45.130	ENSEBUG00000005059	smg6	71	45.111	Eptatretus_burgeri
ENSPPYG00000007790	SMG6	99	88.732	ENSEASG00005009318	SMG6	99	88.732	Equus_asinus_asinus
ENSPPYG00000007790	SMG6	99	88.451	ENSECAG00000006519	SMG6	99	88.451	Equus_caballus
ENSPPYG00000007790	SMG6	96	85.774	ENSEEUG00000003493	SMG6	96	85.774	Erinaceus_europaeus
ENSPPYG00000007790	SMG6	71	55.207	ENSELUG00000005934	smg6	69	51.606	Esox_lucius
ENSPPYG00000007790	SMG6	100	89.451	ENSFCAG00000028817	SMG6	100	89.451	Felis_catus
ENSPPYG00000007790	SMG6	98	66.785	ENSFALG00000006538	SMG6	100	66.856	Ficedula_albicollis
ENSPPYG00000007790	SMG6	100	87.131	ENSFDAG00000015106	SMG6	100	87.131	Fukomys_damarensis
ENSPPYG00000007790	SMG6	83	48.607	ENSFHEG00000013282	smg6	75	49.071	Fundulus_heteroclitus
ENSPPYG00000007790	SMG6	53	61.860	ENSGMOG00000019077	smg6	68	61.860	Gadus_morhua
ENSPPYG00000007790	SMG6	100	66.874	ENSGALG00000003108	SMG6	98	66.644	Gallus_gallus
ENSPPYG00000007790	SMG6	79	51.151	ENSGAFG00000000379	smg6	74	50.078	Gambusia_affinis
ENSPPYG00000007790	SMG6	91	51.073	ENSGACG00000020521	smg6	100	50.330	Gasterosteus_aculeatus
ENSPPYG00000007790	SMG6	98	66.313	ENSGAGG00000025617	SMG6	100	66.950	Gopherus_agassizii
ENSPPYG00000007790	SMG6	100	93.319	ENSGGOG00000017156	SMG6	100	93.319	Gorilla_gorilla
ENSPPYG00000007790	SMG6	85	49.281	ENSHBUG00000021311	smg6	74	51.832	Haplochromis_burtoni
ENSPPYG00000007790	SMG6	100	86.657	ENSHGLG00000012882	SMG6	100	86.657	Heterocephalus_glaber_female
ENSPPYG00000007790	SMG6	100	86.728	ENSHGLG00100017815	SMG6	100	86.728	Heterocephalus_glaber_male
ENSPPYG00000007790	SMG6	71	54.346	ENSHCOG00000008761	smg6	83	54.198	Hippocampus_comes
ENSPPYG00000007790	SMG6	83	51.019	ENSIPUG00000012493	smg6	75	51.097	Ictalurus_punctatus
ENSPPYG00000007790	SMG6	100	88.889	ENSSTOG00000028127	SMG6	100	88.889	Ictidomys_tridecemlineatus
ENSPPYG00000007790	SMG6	78	83.393	ENSJJAG00000015367	Smg6	91	84.015	Jaculus_jaculus
ENSPPYG00000007790	SMG6	73	54.163	ENSKMAG00000000279	smg6	76	49.771	Kryptolebias_marmoratus
ENSPPYG00000007790	SMG6	86	49.286	ENSLBEG00000002184	smg6	76	49.478	Labrus_bergylta
ENSPPYG00000007790	SMG6	55	56.220	ENSLACG00000000806	-	98	57.196	Latimeria_chalumnae
ENSPPYG00000007790	SMG6	73	59.497	ENSLOCG00000006448	smg6	86	56.090	Lepisosteus_oculatus
ENSPPYG00000007790	SMG6	100	87.693	ENSLAFG00000001261	SMG6	100	87.693	Loxodonta_africana
ENSPPYG00000007790	SMG6	100	92.405	ENSMFAG00000003394	SMG6	100	92.405	Macaca_fascicularis
ENSPPYG00000007790	SMG6	100	92.335	ENSMMUG00000023161	SMG6	100	92.335	Macaca_mulatta
ENSPPYG00000007790	SMG6	100	87.316	ENSMNEG00000044592	SMG6	100	87.316	Macaca_nemestrina
ENSPPYG00000007790	SMG6	98	89.856	ENSMLEG00000029353	SMG6	100	94.275	Mandrillus_leucophaeus
ENSPPYG00000007790	SMG6	83	52.292	ENSMAMG00000020119	smg6	98	46.316	Mastacembelus_armatus
ENSPPYG00000007790	SMG6	71	54.803	ENSMZEG00005024736	smg6	74	51.562	Maylandia_zebra
ENSPPYG00000007790	SMG6	73	64.057	ENSMGAG00000005401	-	99	64.057	Meleagris_gallopavo
ENSPPYG00000007790	SMG6	100	89.944	ENSMICG00000012913	SMG6	100	89.944	Microcebus_murinus
ENSPPYG00000007790	SMG6	100	44.836	ENSMMOG00000010883	smg6	100	45.415	Mola_mola
ENSPPYG00000007790	SMG6	100	80.632	ENSMODG00000010622	SMG6	100	80.632	Monodelphis_domestica
ENSPPYG00000007790	SMG6	83	51.006	ENSMALG00000001106	smg6	73	51.236	Monopterus_albus
ENSPPYG00000007790	SMG6	100	86.217	MGP_CAROLIEiJ_G0016729	Smg6	100	86.217	Mus_caroli
ENSPPYG00000007790	SMG6	100	86.006	ENSMUSG00000038290	Smg6	100	86.006	Mus_musculus
ENSPPYG00000007790	SMG6	100	85.654	MGP_PahariEiJ_G0017866	Smg6	100	85.654	Mus_pahari
ENSPPYG00000007790	SMG6	100	86.006	MGP_SPRETEiJ_G0017572	Smg6	100	86.006	Mus_spretus
ENSPPYG00000007790	SMG6	100	88.397	ENSMPUG00000013046	SMG6	100	88.397	Mustela_putorius_furo
ENSPPYG00000007790	SMG6	100	87.834	ENSMLUG00000005739	SMG6	100	87.834	Myotis_lucifugus
ENSPPYG00000007790	SMG6	98	85.560	ENSNGAG00000007287	Smg6	100	85.560	Nannospalax_galili
ENSPPYG00000007790	SMG6	85	48.336	ENSNBRG00000009511	smg6	81	50.627	Neolamprologus_brichardi
ENSPPYG00000007790	SMG6	98	92.341	ENSNLEG00000017171	SMG6	99	92.341	Nomascus_leucogenys
ENSPPYG00000007790	SMG6	98	76.631	ENSMEUG00000015804	SMG6	100	76.631	Notamacropus_eugenii
ENSPPYG00000007790	SMG6	57	97.475	ENSOPRG00000000579	SMG6	82	97.368	Ochotona_princeps
ENSPPYG00000007790	SMG6	100	83.345	ENSODEG00000008038	SMG6	100	83.345	Octodon_degus
ENSPPYG00000007790	SMG6	100	47.820	ENSONIG00000005594	smg6	100	48.834	Oreochromis_niloticus
ENSPPYG00000007790	SMG6	100	87.781	ENSOCUG00000013018	SMG6	100	87.992	Oryctolagus_cuniculus
ENSPPYG00000007790	SMG6	83	50.196	ENSORLG00000003317	smg6	74	50.625	Oryzias_latipes
ENSPPYG00000007790	SMG6	83	50.196	ENSORLG00020015343	smg6	74	50.391	Oryzias_latipes_hni
ENSPPYG00000007790	SMG6	83	50.000	ENSORLG00015020454	smg6	74	50.429	Oryzias_latipes_hsok
ENSPPYG00000007790	SMG6	83	49.726	ENSOMEG00000010838	smg6	75	50.000	Oryzias_melastigma
ENSPPYG00000007790	SMG6	100	89.389	ENSOGAG00000004483	SMG6	100	89.389	Otolemur_garnettii
ENSPPYG00000007790	SMG6	100	85.875	ENSOARG00000015076	SMG6	100	87.320	Ovis_aries
ENSPPYG00000007790	SMG6	100	93.038	ENSPPAG00000043296	SMG6	100	93.038	Pan_paniscus
ENSPPYG00000007790	SMG6	100	89.522	ENSPPRG00000014581	SMG6	100	89.522	Panthera_pardus
ENSPPYG00000007790	SMG6	98	89.481	ENSPTIG00000008925	SMG6	98	89.481	Panthera_tigris_altaica
ENSPPYG00000007790	SMG6	100	93.038	ENSPTRG00000008544	SMG6	100	93.038	Pan_troglodytes
ENSPPYG00000007790	SMG6	100	92.335	ENSPANG00000024588	SMG6	100	92.335	Papio_anubis
ENSPPYG00000007790	SMG6	89	65.211	ENSPSIG00000006660	SMG6	96	65.289	Pelodiscus_sinensis
ENSPPYG00000007790	SMG6	100	46.715	ENSPMGG00000000844	smg6	100	53.934	Periophthalmus_magnuspinnatus
ENSPPYG00000007790	SMG6	100	86.990	ENSPEMG00000020707	Smg6	100	86.990	Peromyscus_maniculatus_bairdii
ENSPPYG00000007790	SMG6	100	48.141	ENSPFOG00000012035	smg6	100	48.035	Poecilia_formosa
ENSPPYG00000007790	SMG6	77	52.292	ENSPLAG00000017660	smg6	74	50.078	Poecilia_latipinna
ENSPPYG00000007790	SMG6	77	51.990	ENSPMEG00000000258	smg6	74	50.273	Poecilia_mexicana
ENSPPYG00000007790	SMG6	83	50.584	ENSPREG00000010066	smg6	74	50.428	Poecilia_reticulata
ENSPPYG00000007790	SMG6	100	83.263	ENSPCAG00000000552	SMG6	100	83.263	Procavia_capensis
ENSPPYG00000007790	SMG6	100	89.944	ENSPCOG00000020925	SMG6	100	89.944	Propithecus_coquereli
ENSPPYG00000007790	SMG6	86	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSPPYG00000007790	SMG6	85	50.903	ENSPNYG00000024151	smg6	79	53.505	Pundamilia_nyererei
ENSPPYG00000007790	SMG6	85	48.419	ENSPNAG00000015480	smg6	87	57.672	Pygocentrus_nattereri
ENSPPYG00000007790	SMG6	100	86.498	ENSRNOG00000003041	Smg6	100	86.498	Rattus_norvegicus
ENSPPYG00000007790	SMG6	100	92.335	ENSRBIG00000024746	SMG6	100	92.335	Rhinopithecus_bieti
ENSPPYG00000007790	SMG6	100	92.405	ENSRROG00000030423	SMG6	100	92.405	Rhinopithecus_roxellana
ENSPPYG00000007790	SMG6	100	90.717	ENSSBOG00000022518	SMG6	100	89.100	Saimiri_boliviensis_boliviensis
ENSPPYG00000007790	SMG6	98	79.885	ENSSHAG00000010045	SMG6	98	79.885	Sarcophilus_harrisii
ENSPPYG00000007790	SMG6	72	57.368	ENSSFOG00015005436	smg6	75	50.514	Scleropages_formosus
ENSPPYG00000007790	SMG6	83	51.433	ENSSMAG00000019777	smg6	73	50.894	Scophthalmus_maximus
ENSPPYG00000007790	SMG6	83	51.204	ENSSDUG00000016412	smg6	74	51.165	Seriola_dumerili
ENSPPYG00000007790	SMG6	80	50.322	ENSSLDG00000020747	smg6	96	44.677	Seriola_lalandi_dorsalis
ENSPPYG00000007790	SMG6	99	64.812	ENSSPUG00000007152	SMG6	99	64.882	Sphenodon_punctatus
ENSPPYG00000007790	SMG6	83	50.548	ENSSPAG00000015633	smg6	74	50.782	Stegastes_partitus
ENSPPYG00000007790	SMG6	100	87.280	ENSSSCG00000017826	SMG6	100	87.280	Sus_scrofa
ENSPPYG00000007790	SMG6	100	67.273	ENSTGUG00000005836	SMG6	100	67.413	Taeniopygia_guttata
ENSPPYG00000007790	SMG6	100	44.685	ENSTRUG00000000358	smg6	100	44.722	Takifugu_rubripes
ENSPPYG00000007790	SMG6	100	46.398	ENSTNIG00000016164	smg6	100	46.746	Tetraodon_nigroviridis
ENSPPYG00000007790	SMG6	100	84.177	ENSTBEG00000011424	SMG6	100	84.177	Tupaia_belangeri
ENSPPYG00000007790	SMG6	90	88.376	ENSTTRG00000001175	SMG6	90	88.376	Tursiops_truncatus
ENSPPYG00000007790	SMG6	100	88.632	ENSUAMG00000025152	SMG6	100	88.561	Ursus_americanus
ENSPPYG00000007790	SMG6	98	88.833	ENSUMAG00000009306	SMG6	100	88.833	Ursus_maritimus
ENSPPYG00000007790	SMG6	85	92.593	ENSVPAG00000000225	SMG6	88	92.593	Vicugna_pacos
ENSPPYG00000007790	SMG6	100	88.256	ENSVVUG00000021727	SMG6	100	88.256	Vulpes_vulpes
ENSPPYG00000007790	SMG6	98	57.063	ENSXETG00000023799	SMG6	100	56.783	Xenopus_tropicalis
ENSPPYG00000007790	SMG6	72	55.239	ENSXCOG00000009867	smg6	74	51.386	Xiphophorus_couchianus
ENSPPYG00000007790	SMG6	83	50.582	ENSXMAG00000010321	smg6	74	50.311	Xiphophorus_maculatus