EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPPYG00000009752 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Pongo_abelii
Status: putative
Strand: Plus strand
Length: 35270 bases
Position: chr19:19239328-19274597
Accession: 9962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPYP00000010923	UPF1_Zn_bind	PF09416.10	4.6e-75	1	1
ENSPPYP00000010923	ResIII	PF04851.15	1.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPYT00000011348	UPF1-201	3532	-	ENSPPYP00000010923	1076 (aa)	-	H2NY45

Gene Model

Click here to download ENSPPYG00000009752's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPPYG00000009752's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPYG00000009752	UPF1	100	95.040	ENSG00000005007	UPF1	100	95.040	Homo_sapiens
ENSPPYG00000009752	UPF1	100	85.702	ENSAPOG00000023773	upf1	100	85.702	Acanthochromis_polyacanthus
ENSPPYG00000009752	UPF1	100	86.572	ENSAPOG00000010916	-	100	86.749	Acanthochromis_polyacanthus
ENSPPYG00000009752	UPF1	100	93.380	ENSAMEG00000011474	UPF1	100	93.380	Ailuropoda_melanoleuca
ENSPPYG00000009752	UPF1	100	84.737	ENSACIG00000019949	upf1	100	85.790	Amphilophus_citrinellus
ENSPPYG00000009752	UPF1	91	88.696	ENSACIG00000010985	-	100	88.696	Amphilophus_citrinellus
ENSPPYG00000009752	UPF1	100	85.195	ENSAOCG00000018519	upf1	100	85.340	Amphiprion_ocellaris
ENSPPYG00000009752	UPF1	100	86.661	ENSAOCG00000006352	-	100	86.837	Amphiprion_ocellaris
ENSPPYG00000009752	UPF1	100	86.661	ENSAPEG00000006292	-	100	86.837	Amphiprion_percula
ENSPPYG00000009752	UPF1	100	85.195	ENSAPEG00000016344	upf1	100	85.340	Amphiprion_percula
ENSPPYG00000009752	UPF1	100	84.146	ENSATEG00000017867	upf1	100	84.756	Anabas_testudineus
ENSPPYG00000009752	UPF1	100	86.661	ENSATEG00000016606	-	100	86.837	Anabas_testudineus
ENSPPYG00000009752	UPF1	93	92.864	ENSAPLG00000009175	UPF1	99	92.864	Anas_platyrhynchos
ENSPPYG00000009752	UPF1	95	92.000	ENSANAG00000024107	UPF1	97	92.000	Aotus_nancymaae
ENSPPYG00000009752	UPF1	100	86.384	ENSACLG00000022630	-	100	86.737	Astatotilapia_calliptera
ENSPPYG00000009752	UPF1	100	84.474	ENSACLG00000007181	upf1	100	85.525	Astatotilapia_calliptera
ENSPPYG00000009752	UPF1	100	87.367	ENSAMXG00000042187	upf1	100	87.721	Astyanax_mexicanus
ENSPPYG00000009752	UPF1	100	94.248	ENSBTAG00000020922	UPF1	100	94.248	Bos_taurus
ENSPPYG00000009752	UPF1	88	48.259	WBGene00004880	smg-2	95	46.168	Caenorhabditis_elegans
ENSPPYG00000009752	UPF1	100	95.040	ENSCJAG00000019627	UPF1	100	95.040	Callithrix_jacchus
ENSPPYG00000009752	UPF1	100	94.690	ENSCAFG00000014578	UPF1	100	94.690	Canis_familiaris
ENSPPYG00000009752	UPF1	100	93.717	ENSCAFG00020012347	UPF1	100	93.717	Canis_lupus_dingo
ENSPPYG00000009752	UPF1	100	93.800	ENSCHIG00000011018	UPF1	100	93.800	Capra_hircus
ENSPPYG00000009752	UPF1	96	92.791	ENSTSYG00000008877	UPF1	99	92.791	Carlito_syrichta
ENSPPYG00000009752	UPF1	93	93.441	ENSCAPG00000005758	UPF1	95	93.441	Cavia_aperea
ENSPPYG00000009752	UPF1	100	91.512	ENSCPOG00000025463	UPF1	100	91.512	Cavia_porcellus
ENSPPYG00000009752	UPF1	100	94.331	ENSCCAG00000032175	UPF1	100	94.331	Cebus_capucinus
ENSPPYG00000009752	UPF1	95	93.178	ENSCATG00000040306	UPF1	98	93.178	Cercocebus_atys
ENSPPYG00000009752	UPF1	96	92.287	ENSCLAG00000004037	UPF1	100	94.297	Chinchilla_lanigera
ENSPPYG00000009752	UPF1	100	93.977	ENSCSAG00000005276	UPF1	100	93.977	Chlorocebus_sabaeus
ENSPPYG00000009752	UPF1	100	90.925	ENSCPBG00000012513	UPF1	100	90.925	Chrysemys_picta_bellii
ENSPPYG00000009752	UPF1	77	73.529	ENSCING00000021399	-	99	73.529	Ciona_intestinalis
ENSPPYG00000009752	UPF1	99	68.426	ENSCSAVG00000006533	-	99	68.426	Ciona_savignyi
ENSPPYG00000009752	UPF1	95	94.019	ENSCANG00000029819	UPF1	99	94.019	Colobus_angolensis_palliatus
ENSPPYG00000009752	UPF1	100	92.648	ENSCGRG00001021067	Upf1	100	92.648	Cricetulus_griseus_chok1gshd
ENSPPYG00000009752	UPF1	94	92.891	ENSCGRG00000013480	Upf1	99	92.891	Cricetulus_griseus_crigri
ENSPPYG00000009752	UPF1	100	82.768	ENSCSEG00000017239	upf1	100	82.663	Cynoglossus_semilaevis
ENSPPYG00000009752	UPF1	100	86.737	ENSCSEG00000016159	-	100	86.649	Cynoglossus_semilaevis
ENSPPYG00000009752	UPF1	100	86.396	ENSCVAG00000010561	upf1	100	86.572	Cyprinodon_variegatus
ENSPPYG00000009752	UPF1	100	87.279	ENSDARG00000016302	upf1	100	87.633	Danio_rerio
ENSPPYG00000009752	UPF1	94	90.739	ENSDORG00000009984	Upf1	96	90.739	Dipodomys_ordii
ENSPPYG00000009752	UPF1	85	66.804	FBgn0030354	Upf1	84	63.576	Drosophila_melanogaster
ENSPPYG00000009752	UPF1	58	83.917	ENSEBUG00000010069	upf1	96	83.758	Eptatretus_burgeri
ENSPPYG00000009752	UPF1	100	93.274	ENSEASG00005006549	UPF1	100	93.274	Equus_asinus_asinus
ENSPPYG00000009752	UPF1	100	93.274	ENSECAG00000010639	UPF1	100	93.274	Equus_caballus
ENSPPYG00000009752	UPF1	100	85.940	ENSELUG00000012916	-	100	85.852	Esox_lucius
ENSPPYG00000009752	UPF1	100	84.697	ENSELUG00000020917	upf1	100	85.048	Esox_lucius
ENSPPYG00000009752	UPF1	100	94.602	ENSFCAG00000009757	UPF1	100	94.602	Felis_catus
ENSPPYG00000009752	UPF1	96	90.642	ENSFALG00000009312	UPF1	99	90.642	Ficedula_albicollis
ENSPPYG00000009752	UPF1	95	92.937	ENSFDAG00000014816	UPF1	100	94.202	Fukomys_damarensis
ENSPPYG00000009752	UPF1	100	82.997	ENSFHEG00000006428	upf1	100	82.997	Fundulus_heteroclitus
ENSPPYG00000009752	UPF1	84	92.665	ENSFHEG00000016276	-	96	92.665	Fundulus_heteroclitus
ENSPPYG00000009752	UPF1	100	86.637	ENSGMOG00000007541	upf1	100	86.991	Gadus_morhua
ENSPPYG00000009752	UPF1	100	91.770	ENSGALG00000003220	UPF1	100	91.770	Gallus_gallus
ENSPPYG00000009752	UPF1	100	86.372	ENSGAFG00000004831	upf1	100	86.384	Gambusia_affinis
ENSPPYG00000009752	UPF1	61	86.809	ENSGAFG00000015443	-	85	86.809	Gambusia_affinis
ENSPPYG00000009752	UPF1	100	91.247	ENSGAGG00000022217	UPF1	100	91.247	Gopherus_agassizii
ENSPPYG00000009752	UPF1	93	93.637	ENSGGOG00000002608	UPF1	99	93.637	Gorilla_gorilla
ENSPPYG00000009752	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSPPYG00000009752	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSPPYG00000009752	UPF1	100	94.243	ENSHGLG00000010900	UPF1	100	94.243	Heterocephalus_glaber_female
ENSPPYG00000009752	UPF1	96	90.674	ENSHGLG00100005904	UPF1	99	90.674	Heterocephalus_glaber_male
ENSPPYG00000009752	UPF1	100	86.118	ENSHCOG00000008918	upf1	100	87.356	Hippocampus_comes
ENSPPYG00000009752	UPF1	100	87.809	ENSIPUG00000005108	UPF1	100	88.074	Ictalurus_punctatus
ENSPPYG00000009752	UPF1	100	94.243	ENSSTOG00000009196	UPF1	100	94.243	Ictidomys_tridecemlineatus
ENSPPYG00000009752	UPF1	100	93.357	ENSJJAG00000023151	Upf1	100	93.357	Jaculus_jaculus
ENSPPYG00000009752	UPF1	100	87.422	ENSKMAG00000004962	upf1	100	87.779	Kryptolebias_marmoratus
ENSPPYG00000009752	UPF1	100	86.484	ENSLBEG00000027848	-	100	86.661	Labrus_bergylta
ENSPPYG00000009752	UPF1	100	83.944	ENSLBEG00000014862	upf1	100	84.555	Labrus_bergylta
ENSPPYG00000009752	UPF1	60	89.527	ENSLACG00000008482	UPF1	100	89.527	Latimeria_chalumnae
ENSPPYG00000009752	UPF1	100	89.302	ENSLOCG00000002072	upf1	100	89.302	Lepisosteus_oculatus
ENSPPYG00000009752	UPF1	100	93.805	ENSLAFG00000014963	UPF1	100	93.805	Loxodonta_africana
ENSPPYG00000009752	UPF1	100	95.040	ENSMFAG00000037748	UPF1	100	95.040	Macaca_fascicularis
ENSPPYG00000009752	UPF1	100	95.040	ENSMMUG00000023286	UPF1	100	95.040	Macaca_mulatta
ENSPPYG00000009752	UPF1	100	95.040	ENSMNEG00000000046	UPF1	100	95.040	Macaca_nemestrina
ENSPPYG00000009752	UPF1	93	94.677	ENSMLEG00000028404	UPF1	100	94.677	Mandrillus_leucophaeus
ENSPPYG00000009752	UPF1	100	86.131	ENSMAMG00000006231	-	100	86.484	Mastacembelus_armatus
ENSPPYG00000009752	UPF1	100	83.972	ENSMAMG00000006229	upf1	100	84.756	Mastacembelus_armatus
ENSPPYG00000009752	UPF1	100	86.384	ENSMZEG00005016386	-	100	86.737	Maylandia_zebra
ENSPPYG00000009752	UPF1	100	83.695	ENSMZEG00005003489	upf1	100	84.952	Maylandia_zebra
ENSPPYG00000009752	UPF1	93	92.395	ENSMGAG00000004745	UPF1	100	92.395	Meleagris_gallopavo
ENSPPYG00000009752	UPF1	95	92.208	ENSMAUG00000011398	Upf1	97	92.208	Mesocricetus_auratus
ENSPPYG00000009752	UPF1	100	93.623	ENSMICG00000001659	UPF1	100	93.623	Microcebus_murinus
ENSPPYG00000009752	UPF1	100	93.446	ENSMOCG00000005699	Upf1	100	93.446	Microtus_ochrogaster
ENSPPYG00000009752	UPF1	93	86.515	ENSMMOG00000007537	-	99	86.515	Mola_mola
ENSPPYG00000009752	UPF1	100	85.195	ENSMMOG00000007881	upf1	100	85.310	Mola_mola
ENSPPYG00000009752	UPF1	100	93.204	ENSMODG00000003689	UPF1	100	93.204	Monodelphis_domestica
ENSPPYG00000009752	UPF1	100	86.007	ENSMALG00000000144	upf1	100	86.275	Monopterus_albus
ENSPPYG00000009752	UPF1	100	85.488	ENSMALG00000018100	-	100	85.664	Monopterus_albus
ENSPPYG00000009752	UPF1	100	93.534	MGP_CAROLIEiJ_G0031142	Upf1	100	93.534	Mus_caroli
ENSPPYG00000009752	UPF1	100	93.534	ENSMUSG00000058301	Upf1	100	93.534	Mus_musculus
ENSPPYG00000009752	UPF1	100	93.534	MGP_PahariEiJ_G0021607	Upf1	100	93.534	Mus_pahari
ENSPPYG00000009752	UPF1	100	93.534	MGP_SPRETEiJ_G0032260	Upf1	100	93.534	Mus_spretus
ENSPPYG00000009752	UPF1	100	93.717	ENSMPUG00000015516	UPF1	100	93.717	Mustela_putorius_furo
ENSPPYG00000009752	UPF1	99	93.339	ENSMLUG00000012122	UPF1	99	93.339	Myotis_lucifugus
ENSPPYG00000009752	UPF1	100	93.711	ENSNGAG00000024107	Upf1	100	93.711	Nannospalax_galili
ENSPPYG00000009752	UPF1	100	82.792	ENSNBRG00000000670	upf1	100	83.834	Neolamprologus_brichardi
ENSPPYG00000009752	UPF1	100	84.682	ENSNBRG00000022069	-	100	87.788	Neolamprologus_brichardi
ENSPPYG00000009752	UPF1	93	88.973	ENSNLEG00000006062	UPF1	100	88.973	Nomascus_leucogenys
ENSPPYG00000009752	UPF1	83	87.795	ENSMEUG00000014146	-	83	87.795	Notamacropus_eugenii
ENSPPYG00000009752	UPF1	93	85.823	ENSOPRG00000014018	UPF1	100	85.823	Ochotona_princeps
ENSPPYG00000009752	UPF1	100	93.003	ENSODEG00000012426	UPF1	100	93.003	Octodon_degus
ENSPPYG00000009752	UPF1	100	86.472	ENSONIG00000012729	-	100	86.826	Oreochromis_niloticus
ENSPPYG00000009752	UPF1	100	83.955	ENSONIG00000010452	upf1	100	85.214	Oreochromis_niloticus
ENSPPYG00000009752	UPF1	100	92.403	ENSOANG00000004568	UPF1	100	92.403	Ornithorhynchus_anatinus
ENSPPYG00000009752	UPF1	100	86.749	ENSORLG00000008453	upf1	100	86.749	Oryzias_latipes
ENSPPYG00000009752	UPF1	100	86.584	ENSORLG00020014758	upf1	100	86.584	Oryzias_latipes_hni
ENSPPYG00000009752	UPF1	97	91.351	ENSORLG00015010165	upf1	100	86.584	Oryzias_latipes_hsok
ENSPPYG00000009752	UPF1	100	86.837	ENSOMEG00000003665	upf1	100	86.749	Oryzias_melastigma
ENSPPYG00000009752	UPF1	100	93.977	ENSOGAG00000012866	UPF1	100	93.977	Otolemur_garnettii
ENSPPYG00000009752	UPF1	96	91.812	ENSOARG00000010739	UPF1	100	91.805	Ovis_aries
ENSPPYG00000009752	UPF1	95	93.832	ENSPPAG00000043884	UPF1	97	93.832	Pan_paniscus
ENSPPYG00000009752	UPF1	100	94.602	ENSPPRG00000023470	UPF1	100	94.602	Panthera_pardus
ENSPPYG00000009752	UPF1	93	91.246	ENSPTIG00000010159	UPF1	99	91.246	Panthera_tigris_altaica
ENSPPYG00000009752	UPF1	100	95.040	ENSPTRG00000010721	UPF1	100	95.040	Pan_troglodytes
ENSPPYG00000009752	UPF1	100	95.040	ENSPANG00000008847	UPF1	100	95.040	Papio_anubis
ENSPPYG00000009752	UPF1	91	88.533	ENSPKIG00000006069	upf1	96	88.921	Paramormyrops_kingsleyae
ENSPPYG00000009752	UPF1	66	90.588	ENSPSIG00000009491	UPF1	100	90.588	Pelodiscus_sinensis
ENSPPYG00000009752	UPF1	100	83.157	ENSPMGG00000017327	upf1	100	83.803	Periophthalmus_magnuspinnatus
ENSPPYG00000009752	UPF1	100	93.623	ENSPEMG00000001085	Upf1	100	93.623	Peromyscus_maniculatus_bairdii
ENSPPYG00000009752	UPF1	100	81.842	ENSPMAG00000001206	upf1	100	81.570	Petromyzon_marinus
ENSPPYG00000009752	UPF1	100	92.743	ENSPCIG00000006156	UPF1	100	92.743	Phascolarctos_cinereus
ENSPPYG00000009752	UPF1	100	83.786	ENSPLAG00000018155	-	100	83.699	Poecilia_latipinna
ENSPPYG00000009752	UPF1	100	86.460	ENSPLAG00000016232	-	100	86.472	Poecilia_latipinna
ENSPPYG00000009752	UPF1	100	86.549	ENSPMEG00000016319	-	100	86.561	Poecilia_mexicana
ENSPPYG00000009752	UPF1	100	84.527	ENSPMEG00000011443	-	100	84.439	Poecilia_mexicana
ENSPPYG00000009752	UPF1	100	85.841	ENSPREG00000011247	-	100	86.295	Poecilia_reticulata
ENSPPYG00000009752	UPF1	100	83.874	ENSPREG00000009940	upf1	100	83.874	Poecilia_reticulata
ENSPPYG00000009752	UPF1	75	91.515	ENSPCAG00000012962	UPF1	76	91.515	Procavia_capensis
ENSPPYG00000009752	UPF1	100	94.508	ENSPCOG00000023813	UPF1	100	94.508	Propithecus_coquereli
ENSPPYG00000009752	UPF1	72	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSPPYG00000009752	UPF1	100	86.384	ENSPNYG00000016731	-	100	86.737	Pundamilia_nyererei
ENSPPYG00000009752	UPF1	100	83.695	ENSPNYG00000003694	upf1	100	84.952	Pundamilia_nyererei
ENSPPYG00000009752	UPF1	100	87.367	ENSPNAG00000025614	upf1	100	87.721	Pygocentrus_nattereri
ENSPPYG00000009752	UPF1	100	93.534	ENSRNOG00000020134	Upf1	100	93.534	Rattus_norvegicus
ENSPPYG00000009752	UPF1	95	91.682	ENSRBIG00000013894	UPF1	99	91.682	Rhinopithecus_bieti
ENSPPYG00000009752	UPF1	95	94.019	ENSRROG00000040935	UPF1	99	94.019	Rhinopithecus_roxellana
ENSPPYG00000009752	UPF1	75	52.859	YMR080C	NAM7	86	52.859	Saccharomyces_cerevisiae
ENSPPYG00000009752	UPF1	95	93.209	ENSSBOG00000023632	UPF1	98	93.209	Saimiri_boliviensis_boliviensis
ENSPPYG00000009752	UPF1	93	93.542	ENSSHAG00000010499	UPF1	100	93.542	Sarcophilus_harrisii
ENSPPYG00000009752	UPF1	100	88.506	ENSSFOG00015021095	upf1	99	90.970	Scleropages_formosus
ENSPPYG00000009752	UPF1	100	86.661	ENSSMAG00000021018	-	100	86.837	Scophthalmus_maximus
ENSPPYG00000009752	UPF1	100	83.246	ENSSMAG00000005055	upf1	100	84.045	Scophthalmus_maximus
ENSPPYG00000009752	UPF1	100	86.837	ENSSDUG00000009629	-	100	87.014	Seriola_dumerili
ENSPPYG00000009752	UPF1	100	84.233	ENSSDUG00000013320	upf1	100	85.017	Seriola_dumerili
ENSPPYG00000009752	UPF1	100	86.837	ENSSLDG00000006878	-	100	87.014	Seriola_lalandi_dorsalis
ENSPPYG00000009752	UPF1	100	84.974	ENSSLDG00000020868	upf1	100	85.501	Seriola_lalandi_dorsalis
ENSPPYG00000009752	UPF1	100	91.150	ENSSPUG00000010538	UPF1	100	91.150	Sphenodon_punctatus
ENSPPYG00000009752	UPF1	100	86.826	ENSSPAG00000011521	-	100	86.914	Stegastes_partitus
ENSPPYG00000009752	UPF1	100	83.378	ENSSPAG00000000003	upf1	100	83.569	Stegastes_partitus
ENSPPYG00000009752	UPF1	100	94.159	ENSSSCG00000039301	UPF1	100	94.159	Sus_scrofa
ENSPPYG00000009752	UPF1	83	84.607	ENSTGUG00000001057	UPF1	100	95.280	Taeniopygia_guttata
ENSPPYG00000009752	UPF1	100	84.704	ENSTRUG00000000150	upf1	100	84.704	Takifugu_rubripes
ENSPPYG00000009752	UPF1	100	85.752	ENSTRUG00000005131	-	100	85.664	Takifugu_rubripes
ENSPPYG00000009752	UPF1	100	89.469	ENSTTRG00000011544	UPF1	100	88.850	Tursiops_truncatus
ENSPPYG00000009752	UPF1	100	93.628	ENSUAMG00000007093	UPF1	100	93.628	Ursus_americanus
ENSPPYG00000009752	UPF1	95	92.771	ENSUMAG00000006652	UPF1	99	93.340	Ursus_maritimus
ENSPPYG00000009752	UPF1	100	93.717	ENSVVUG00000007797	UPF1	100	93.717	Vulpes_vulpes
ENSPPYG00000009752	UPF1	100	80.000	ENSXETG00000013602	upf1	100	80.000	Xenopus_tropicalis
ENSPPYG00000009752	UPF1	92	88.580	ENSXCOG00000005764	-	100	88.580	Xiphophorus_couchianus
ENSPPYG00000009752	UPF1	97	83.960	ENSXCOG00000015275	-	96	83.868	Xiphophorus_couchianus
ENSPPYG00000009752	UPF1	100	84.397	ENSXMAG00000001703	-	100	84.309	Xiphophorus_maculatus
ENSPPYG00000009752	UPF1	100	86.372	ENSXMAG00000002540	-	100	86.384	Xiphophorus_maculatus