EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPPYG00000012217 (Gene tree)
Gene ID: -
Gene Symbol: POLR1A
Alias: DKFZP586M0122|FLJ21915|RPA1|RPO1-4
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Pongo_abelii
Status: putative
Strand: Plus strand
Length: 89303 bases
Position: chr2a:24024279-24113581
Accession: 17264
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPYP00000013623	RNA_pol_Rpb1_5	PF04998.17	3e-104	1	1
ENSPPYP00000013623	RNA_pol_Rpb1_4	PF05000.17	1e-25	1	1
ENSPPYP00000013623	RNA_pol_Rpb1_2	PF00623.20	2.4e-71	1	1
ENSPPYP00000013623	RNA_pol_Rpb1_3	PF04983.18	2.1e-36	1	1
ENSPPYP00000013623	RNA_pol_Rpb1_1	PF04997.12	1.3e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPYT00000014178	POLR1A-201	6633	-	ENSPPYP00000013623	1720 (aa)	-	H2P5L0

Gene Model

Click here to download ENSPPYG00000012217's gene model file

Pathways

Pathway ID	Pathway Name	Source
pon03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPYG00000012217's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPPYG00000012217	POLR1A	62	33.118	ENSPPYG00000002305	POLR3A	74	33.225
ENSPPYG00000012217	POLR1A	88	30.769	ENSPPYG00000007924	-	52	36.517

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPYG00000012217	POLR1A	100	97.674	ENSG00000068654	POLR1A	100	97.674	Homo_sapiens
ENSPPYG00000012217	POLR1A	69	67.593	ENSAPOG00000017945	polr1a	99	67.845	Acanthochromis_polyacanthus
ENSPPYG00000012217	POLR1A	100	90.233	ENSAMEG00000005807	POLR1A	100	90.779	Ailuropoda_melanoleuca
ENSPPYG00000012217	POLR1A	100	63.362	ENSACIG00000022147	polr1a	100	62.587	Amphilophus_citrinellus
ENSPPYG00000012217	POLR1A	100	65.422	ENSAOCG00000017336	polr1a	100	68.839	Amphiprion_ocellaris
ENSPPYG00000012217	POLR1A	100	65.307	ENSAPEG00000016105	polr1a	100	65.991	Amphiprion_percula
ENSPPYG00000012217	POLR1A	100	66.146	ENSATEG00000016773	polr1a	100	65.685	Anabas_testudineus
ENSPPYG00000012217	POLR1A	86	72.222	ENSAPLG00000013871	POLR1A	99	72.222	Anas_platyrhynchos
ENSPPYG00000012217	POLR1A	99	69.191	ENSACAG00000012141	POLR1A	99	68.145	Anolis_carolinensis
ENSPPYG00000012217	POLR1A	100	93.895	ENSANAG00000033927	POLR1A	100	93.605	Aotus_nancymaae
ENSPPYG00000012217	POLR1A	100	62.189	ENSACLG00000020541	polr1a	100	61.908	Astatotilapia_calliptera
ENSPPYG00000012217	POLR1A	100	89.715	ENSBTAG00000006481	POLR1A	100	89.715	Bos_taurus
ENSPPYG00000012217	POLR1A	99	38.239	WBGene00012999	rpoa-1	98	38.298	Caenorhabditis_elegans
ENSPPYG00000012217	POLR1A	100	93.779	ENSCJAG00000019547	POLR1A	100	93.779	Callithrix_jacchus
ENSPPYG00000012217	POLR1A	100	90.006	ENSCAFG00000007613	POLR1A	100	89.948	Canis_familiaris
ENSPPYG00000012217	POLR1A	100	89.803	ENSCAFG00020014752	POLR1A	100	89.745	Canis_lupus_dingo
ENSPPYG00000012217	POLR1A	100	87.775	ENSCHIG00000018204	POLR1A	100	87.717	Capra_hircus
ENSPPYG00000012217	POLR1A	100	89.483	ENSTSYG00000002761	POLR1A	100	89.076	Carlito_syrichta
ENSPPYG00000012217	POLR1A	97	83.542	ENSCAPG00000010132	POLR1A	100	83.453	Cavia_aperea
ENSPPYG00000012217	POLR1A	100	87.921	ENSCPOG00000012350	POLR1A	100	88.037	Cavia_porcellus
ENSPPYG00000012217	POLR1A	100	94.302	ENSCCAG00000019839	POLR1A	100	94.302	Cebus_capucinus
ENSPPYG00000012217	POLR1A	100	97.035	ENSCATG00000029786	POLR1A	100	97.035	Cercocebus_atys
ENSPPYG00000012217	POLR1A	100	88.348	ENSCLAG00000005187	POLR1A	100	88.174	Chinchilla_lanigera
ENSPPYG00000012217	POLR1A	100	96.919	ENSCSAG00000016251	POLR1A	100	96.919	Chlorocebus_sabaeus
ENSPPYG00000012217	POLR1A	99	73.739	ENSCPBG00000001115	POLR1A	99	73.730	Chrysemys_picta_bellii
ENSPPYG00000012217	POLR1A	99	47.096	ENSCSAVG00000007184	-	99	46.781	Ciona_savignyi
ENSPPYG00000012217	POLR1A	100	93.783	ENSCANG00000031785	POLR1A	100	93.783	Colobus_angolensis_palliatus
ENSPPYG00000012217	POLR1A	96	88.076	ENSCGRG00001006651	Polr1a	100	88.076	Cricetulus_griseus_chok1gshd
ENSPPYG00000012217	POLR1A	60	86.031	ENSCGRG00000010834	Polr1a	100	87.440	Cricetulus_griseus_crigri
ENSPPYG00000012217	POLR1A	100	61.943	ENSCSEG00000020190	polr1a	100	61.770	Cynoglossus_semilaevis
ENSPPYG00000012217	POLR1A	100	64.208	ENSCVAG00000020941	polr1a	100	64.774	Cyprinodon_variegatus
ENSPPYG00000012217	POLR1A	100	66.744	ENSDARG00000098375	polr1a	100	65.992	Danio_rerio
ENSPPYG00000012217	POLR1A	100	82.319	ENSDNOG00000010829	POLR1A	100	82.377	Dasypus_novemcinctus
ENSPPYG00000012217	POLR1A	100	87.334	ENSDORG00000008298	Polr1a	100	87.514	Dipodomys_ordii
ENSPPYG00000012217	POLR1A	80	43.871	FBgn0019938	RpI1	99	42.708	Drosophila_melanogaster
ENSPPYG00000012217	POLR1A	72	100.000	ENSETEG00000000412	-	72	100.000	Echinops_telfairi
ENSPPYG00000012217	POLR1A	81	66.667	ENSEBUG00000005667	-	99	47.616	Eptatretus_burgeri
ENSPPYG00000012217	POLR1A	100	91.453	ENSEASG00005001625	POLR1A	100	91.453	Equus_asinus_asinus
ENSPPYG00000012217	POLR1A	100	91.453	ENSECAG00000010092	POLR1A	100	92.857	Equus_caballus
ENSPPYG00000012217	POLR1A	100	91.453	ENSECAG00000036306	-	100	92.857	Equus_caballus
ENSPPYG00000012217	POLR1A	100	91.453	ENSECAG00000030510	-	100	92.857	Equus_caballus
ENSPPYG00000012217	POLR1A	81	94.681	ENSEEUG00000000676	POLR1A	85	94.444	Erinaceus_europaeus
ENSPPYG00000012217	POLR1A	100	66.686	ENSELUG00000012769	polr1a	99	66.454	Esox_lucius
ENSPPYG00000012217	POLR1A	100	91.163	ENSFCAG00000008966	POLR1A	100	90.814	Felis_catus
ENSPPYG00000012217	POLR1A	99	70.112	ENSFALG00000010082	POLR1A	99	70.346	Ficedula_albicollis
ENSPPYG00000012217	POLR1A	100	88.269	ENSFDAG00000013726	POLR1A	100	87.805	Fukomys_damarensis
ENSPPYG00000012217	POLR1A	100	61.731	ENSFHEG00000005996	polr1a	100	61.668	Fundulus_heteroclitus
ENSPPYG00000012217	POLR1A	100	59.791	ENSGMOG00000002230	polr1a	100	59.931	Gadus_morhua
ENSPPYG00000012217	POLR1A	90	68.786	ENSGALG00000038160	-	99	68.786	Gallus_gallus
ENSPPYG00000012217	POLR1A	100	64.522	ENSGAFG00000015266	polr1a	100	63.977	Gambusia_affinis
ENSPPYG00000012217	POLR1A	100	64.339	ENSGACG00000018791	polr1a	100	64.339	Gasterosteus_aculeatus
ENSPPYG00000012217	POLR1A	89	74.467	ENSGAGG00000004984	-	96	80.025	Gopherus_agassizii
ENSPPYG00000012217	POLR1A	100	97.733	ENSGGOG00000001788	POLR1A	100	97.733	Gorilla_gorilla
ENSPPYG00000012217	POLR1A	90	64.137	ENSHBUG00000020021	polr1a	99	64.137	Haplochromis_burtoni
ENSPPYG00000012217	POLR1A	100	88.269	ENSHGLG00000006334	POLR1A	100	88.560	Heterocephalus_glaber_female
ENSPPYG00000012217	POLR1A	100	88.014	ENSHGLG00100006614	POLR1A	100	88.303	Heterocephalus_glaber_male
ENSPPYG00000012217	POLR1A	100	61.591	ENSHCOG00000003345	polr1a	100	61.521	Hippocampus_comes
ENSPPYG00000012217	POLR1A	100	65.609	ENSIPUG00000013174	polr1a	100	64.919	Ictalurus_punctatus
ENSPPYG00000012217	POLR1A	99	86.853	ENSSTOG00000012580	POLR1A	99	86.969	Ictidomys_tridecemlineatus
ENSPPYG00000012217	POLR1A	100	86.543	ENSJJAG00000013113	Polr1a	100	86.775	Jaculus_jaculus
ENSPPYG00000012217	POLR1A	100	65.157	ENSKMAG00000007399	polr1a	100	64.679	Kryptolebias_marmoratus
ENSPPYG00000012217	POLR1A	94	68.454	ENSLBEG00000015401	polr1a	98	68.188	Labrus_bergylta
ENSPPYG00000012217	POLR1A	53	75.626	ENSLACG00000003218	polr1a	100	75.626	Latimeria_chalumnae
ENSPPYG00000012217	POLR1A	100	69.942	ENSLOCG00000010881	polr1a	100	69.595	Lepisosteus_oculatus
ENSPPYG00000012217	POLR1A	100	89.005	ENSLAFG00000014948	POLR1A	100	89.120	Loxodonta_africana
ENSPPYG00000012217	POLR1A	100	97.093	ENSMFAG00000046097	POLR1A	100	97.093	Macaca_fascicularis
ENSPPYG00000012217	POLR1A	100	96.977	ENSMMUG00000015815	POLR1A	100	96.977	Macaca_mulatta
ENSPPYG00000012217	POLR1A	100	97.035	ENSMNEG00000043313	POLR1A	100	97.035	Macaca_nemestrina
ENSPPYG00000012217	POLR1A	100	96.279	ENSMLEG00000042428	POLR1A	100	96.279	Mandrillus_leucophaeus
ENSPPYG00000012217	POLR1A	100	66.454	ENSMAMG00000016565	polr1a	100	66.048	Mastacembelus_armatus
ENSPPYG00000012217	POLR1A	100	65.721	ENSMZEG00005004915	polr1a	100	65.491	Maylandia_zebra
ENSPPYG00000012217	POLR1A	99	68.580	ENSMGAG00000013111	POLR1A	99	68.580	Meleagris_gallopavo
ENSPPYG00000012217	POLR1A	92	86.924	ENSMAUG00000008497	Polr1a	100	86.734	Mesocricetus_auratus
ENSPPYG00000012217	POLR1A	100	91.865	ENSMICG00000000757	POLR1A	100	91.575	Microcebus_murinus
ENSPPYG00000012217	POLR1A	100	86.450	ENSMOCG00000000122	Polr1a	100	87.145	Microtus_ochrogaster
ENSPPYG00000012217	POLR1A	100	64.555	ENSMMOG00000010216	polr1a	100	63.947	Mola_mola
ENSPPYG00000012217	POLR1A	100	74.899	ENSMODG00000009335	POLR1A	100	74.538	Monodelphis_domestica
ENSPPYG00000012217	POLR1A	100	65.411	ENSMALG00000013363	polr1a	100	64.594	Monopterus_albus
ENSPPYG00000012217	POLR1A	100	85.524	MGP_CAROLIEiJ_G0028494	Polr1a	100	85.119	Mus_caroli
ENSPPYG00000012217	POLR1A	100	85.814	ENSMUSG00000049553	Polr1a	100	85.408	Mus_musculus
ENSPPYG00000012217	POLR1A	100	85.929	MGP_PahariEiJ_G0022230	Polr1a	100	85.582	Mus_pahari
ENSPPYG00000012217	POLR1A	100	84.121	MGP_SPRETEiJ_G0029499	Polr1a	100	84.132	Mus_spretus
ENSPPYG00000012217	POLR1A	100	90.116	ENSMPUG00000009135	POLR1A	100	90.058	Mustela_putorius_furo
ENSPPYG00000012217	POLR1A	100	89.011	ENSMLUG00000015723	POLR1A	100	88.664	Myotis_lucifugus
ENSPPYG00000012217	POLR1A	100	87.616	ENSNGAG00000017907	Polr1a	100	87.789	Nannospalax_galili
ENSPPYG00000012217	POLR1A	100	65.072	ENSNBRG00000000519	polr1a	100	65.607	Neolamprologus_brichardi
ENSPPYG00000012217	POLR1A	100	95.428	ENSNLEG00000002264	POLR1A	100	95.428	Nomascus_leucogenys
ENSPPYG00000012217	POLR1A	75	93.701	ENSMEUG00000011665	-	75	93.701	Notamacropus_eugenii
ENSPPYG00000012217	POLR1A	99	82.155	ENSOPRG00000008269	POLR1A	100	82.097	Ochotona_princeps
ENSPPYG00000012217	POLR1A	100	88.792	ENSODEG00000003542	POLR1A	100	88.618	Octodon_degus
ENSPPYG00000012217	POLR1A	100	65.895	ENSONIG00000015895	polr1a	100	65.953	Oreochromis_niloticus
ENSPPYG00000012217	POLR1A	100	90.471	ENSOCUG00000010138	POLR1A	100	90.471	Oryctolagus_cuniculus
ENSPPYG00000012217	POLR1A	100	64.815	ENSORLG00000008753	polr1a	99	64.641	Oryzias_latipes
ENSPPYG00000012217	POLR1A	100	63.863	ENSORLG00020020726	polr1a	99	63.436	Oryzias_latipes_hni
ENSPPYG00000012217	POLR1A	96	73.404	ENSORLG00015016071	polr1a	99	73.333	Oryzias_latipes_hsok
ENSPPYG00000012217	POLR1A	100	90.407	ENSOGAG00000004031	POLR1A	100	90.407	Otolemur_garnettii
ENSPPYG00000012217	POLR1A	100	89.263	ENSOARG00000020601	POLR1A	100	89.321	Ovis_aries
ENSPPYG00000012217	POLR1A	100	97.326	ENSPPAG00000042450	POLR1A	100	97.326	Pan_paniscus
ENSPPYG00000012217	POLR1A	100	91.163	ENSPPRG00000006702	POLR1A	100	90.814	Panthera_pardus
ENSPPYG00000012217	POLR1A	100	90.614	ENSPTIG00000018783	POLR1A	100	90.267	Panthera_tigris_altaica
ENSPPYG00000012217	POLR1A	100	97.151	ENSPTRG00000012147	POLR1A	100	97.151	Pan_troglodytes
ENSPPYG00000012217	POLR1A	100	96.919	ENSPANG00000025908	POLR1A	100	96.919	Papio_anubis
ENSPPYG00000012217	POLR1A	94	75.172	ENSPKIG00000005468	polr1a	99	75.172	Paramormyrops_kingsleyae
ENSPPYG00000012217	POLR1A	63	71.835	ENSPSIG00000009321	-	99	71.952	Pelodiscus_sinensis
ENSPPYG00000012217	POLR1A	54	67.594	ENSPMGG00000009718	polr1a	95	67.594	Periophthalmus_magnuspinnatus
ENSPPYG00000012217	POLR1A	100	87.435	ENSPEMG00000022224	Polr1a	100	87.666	Peromyscus_maniculatus_bairdii
ENSPPYG00000012217	POLR1A	95	78.446	ENSPCIG00000004222	POLR1A	99	77.872	Phascolarctos_cinereus
ENSPPYG00000012217	POLR1A	100	65.353	ENSPFOG00000005025	polr1a	100	65.295	Poecilia_formosa
ENSPPYG00000012217	POLR1A	100	65.469	ENSPLAG00000021389	polr1a	100	65.411	Poecilia_latipinna
ENSPPYG00000012217	POLR1A	100	63.968	ENSPMEG00000006463	polr1a	100	64.042	Poecilia_mexicana
ENSPPYG00000012217	POLR1A	100	65.238	ENSPREG00000002389	polr1a	100	65.200	Poecilia_reticulata
ENSPPYG00000012217	POLR1A	88	92.000	ENSPCAG00000011582	POLR1A	92	92.000	Procavia_capensis
ENSPPYG00000012217	POLR1A	100	91.342	ENSPCOG00000026987	POLR1A	100	91.110	Propithecus_coquereli
ENSPPYG00000012217	POLR1A	95	91.912	ENSPVAG00000012674	POLR1A	95	90.426	Pteropus_vampyrus
ENSPPYG00000012217	POLR1A	100	65.721	ENSPNYG00000000026	polr1a	100	65.491	Pundamilia_nyererei
ENSPPYG00000012217	POLR1A	100	66.879	ENSPNAG00000019223	polr1a	99	67.483	Pygocentrus_nattereri
ENSPPYG00000012217	POLR1A	100	87.145	ENSRNOG00000009545	Polr1a	100	86.856	Rattus_norvegicus
ENSPPYG00000012217	POLR1A	100	96.163	ENSRBIG00000028335	POLR1A	100	96.163	Rhinopithecus_bieti
ENSPPYG00000012217	POLR1A	100	96.105	ENSRROG00000031473	POLR1A	100	96.105	Rhinopithecus_roxellana
ENSPPYG00000012217	POLR1A	99	36.833	YOR341W	RPA190	99	36.756	Saccharomyces_cerevisiae
ENSPPYG00000012217	POLR1A	100	93.430	ENSSBOG00000030262	POLR1A	100	93.430	Saimiri_boliviensis_boliviensis
ENSPPYG00000012217	POLR1A	100	73.314	ENSSHAG00000014739	POLR1A	100	73.145	Sarcophilus_harrisii
ENSPPYG00000012217	POLR1A	100	67.169	ENSSFOG00015019716	polr1a	100	67.073	Scleropages_formosus
ENSPPYG00000012217	POLR1A	100	65.438	ENSSMAG00000014342	polr1a	100	65.721	Scophthalmus_maximus
ENSPPYG00000012217	POLR1A	100	66.242	ENSSDUG00000014631	polr1a	100	66.068	Seriola_dumerili
ENSPPYG00000012217	POLR1A	100	64.794	ENSSLDG00000024095	polr1a	100	64.621	Seriola_lalandi_dorsalis
ENSPPYG00000012217	POLR1A	75	97.872	ENSSARG00000003136	-	74	97.872	Sorex_araneus
ENSPPYG00000012217	POLR1A	94	79.592	ENSSPUG00000004215	POLR1A	98	79.592	Sphenodon_punctatus
ENSPPYG00000012217	POLR1A	63	71.995	ENSSPAG00000016341	polr1a	94	71.995	Stegastes_partitus
ENSPPYG00000012217	POLR1A	83	90.259	ENSSSCG00000008226	POLR1A	99	90.232	Sus_scrofa
ENSPPYG00000012217	POLR1A	99	69.412	ENSTGUG00000010704	POLR1A	100	69.425	Taeniopygia_guttata
ENSPPYG00000012217	POLR1A	100	63.652	ENSTRUG00000002210	polr1a	99	63.322	Takifugu_rubripes
ENSPPYG00000012217	POLR1A	100	60.172	ENSTNIG00000010116	polr1a	100	60.150	Tetraodon_nigroviridis
ENSPPYG00000012217	POLR1A	74	96.460	ENSTBEG00000008646	POLR1A	74	96.460	Tupaia_belangeri
ENSPPYG00000012217	POLR1A	100	85.938	ENSTTRG00000008597	POLR1A	100	85.532	Tursiops_truncatus
ENSPPYG00000012217	POLR1A	69	91.293	ENSUAMG00000012158	-	94	90.702	Ursus_americanus
ENSPPYG00000012217	POLR1A	100	89.593	ENSUMAG00000006700	POLR1A	100	89.419	Ursus_maritimus
ENSPPYG00000012217	POLR1A	100	89.831	ENSVVUG00000001245	POLR1A	100	89.773	Vulpes_vulpes
ENSPPYG00000012217	POLR1A	100	67.380	ENSXETG00000001952	polr1a	100	68.768	Xenopus_tropicalis
ENSPPYG00000012217	POLR1A	100	65.240	ENSXMAG00000004032	polr1a	100	64.351	Xiphophorus_maculatus