EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPPYG00000012666 (Gene tree)
Gene ID
100174072
Gene Symbol
CPSF3
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Pongo_abelii
Status
putative
Strand
Minus strand
Length
52658 bases
Position
chr2a:103239162-103291819
Accession
2326
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPPYP00000014140CPSF73-100_CPF11718.86.6e-5511
ENSPPYP00000014140Beta-CaspPF10996.83.8e-2911
ENSPPYP00000014140Lactamase_BPF00753.278.3e-1911
ENSPPYP00000014140RMMBLPF07521.129e-2211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPPYT00000014713CPSF3-2013111-ENSPPYP00000014140654 (aa)-H2P703
Gene Model
Click here to download ENSPPYG00000012666's gene model file
Pathways
Pathway IDPathway NameSource
pon03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPPYG00000012666's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPPYG00000012666CPSF36932.932ENSPPYG00000002013INTS118233.333
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPPYG00000012666CPSF310095.322ENSG00000119203CPSF3100100.000Homo_sapiens
ENSPPYG00000012666CPSF39981.149ENSAPOG00000022087cpsf39881.149Acanthochromis_polyacanthus
ENSPPYG00000012666CPSF37291.383ENSAPOG00000012241CPSF39091.348Acanthochromis_polyacanthus
ENSPPYG00000012666CPSF310095.029ENSAMEG00000008493CPSF310095.029Ailuropoda_melanoleuca
ENSPPYG00000012666CPSF39181.905ENSACIG00000023663CPSF39981.905Amphilophus_citrinellus
ENSPPYG00000012666CPSF39178.185ENSACIG00000009846cpsf39978.185Amphilophus_citrinellus
ENSPPYG00000012666CPSF39983.676ENSAOCG00000010077CPSF39883.676Amphiprion_ocellaris
ENSPPYG00000012666CPSF39981.149ENSAOCG00000022056cpsf39486.395Amphiprion_ocellaris
ENSPPYG00000012666CPSF39983.676ENSAPEG00000021167CPSF39883.676Amphiprion_percula
ENSPPYG00000012666CPSF39981.296ENSAPEG00000019526cpsf39881.296Amphiprion_percula
ENSPPYG00000012666CPSF39978.971ENSATEG00000014525CPSF39878.971Anabas_testudineus
ENSPPYG00000012666CPSF39981.149ENSATEG00000003959cpsf39881.149Anabas_testudineus
ENSPPYG00000012666CPSF39890.774ENSAPLG00000006941CPSF39890.774Anas_platyrhynchos
ENSPPYG00000012666CPSF39288.189ENSACAG00000001759CPSF39988.189Anolis_carolinensis
ENSPPYG00000012666CPSF310088.743ENSANAG00000031254CPSF310088.743Aotus_nancymaae
ENSPPYG00000012666CPSF39181.746ENSACLG00000018846CPSF39981.746Astatotilapia_calliptera
ENSPPYG00000012666CPSF39781.353ENSACLG00000014484cpsf39981.353Astatotilapia_calliptera
ENSPPYG00000012666CPSF39983.971ENSAMXG00000004786cpsf39883.971Astyanax_mexicanus
ENSPPYG00000012666CPSF310095.175ENSBTAG00000019735CPSF310095.175Bos_taurus
ENSPPYG00000012666CPSF39055.591WBGene00013460cpsf-38955.591Caenorhabditis_elegans
ENSPPYG00000012666CPSF310095.322ENSCJAG00000006276CPSF310095.322Callithrix_jacchus
ENSPPYG00000012666CPSF310095.029ENSCAFG00000003375CPSF39595.029Canis_familiaris
ENSPPYG00000012666CPSF39095.153ENSCAFG00020026799CPSF310095.153Canis_lupus_dingo
ENSPPYG00000012666CPSF310095.175ENSCHIG00000013973CPSF310095.175Capra_hircus
ENSPPYG00000012666CPSF310095.322ENSTSYG00000002967CPSF310095.322Carlito_syrichta
ENSPPYG00000012666CPSF39793.253ENSCAPG00000013851CPSF310093.253Cavia_aperea
ENSPPYG00000012666CPSF310093.421ENSCPOG00000011299CPSF310093.421Cavia_porcellus
ENSPPYG00000012666CPSF310095.468ENSCCAG00000036730CPSF310095.468Cebus_capucinus
ENSPPYG00000012666CPSF310092.993ENSCATG00000014770CPSF39994.836Cercocebus_atys
ENSPPYG00000012666CPSF310092.982ENSCLAG00000002727CPSF310092.982Chinchilla_lanigera
ENSPPYG00000012666CPSF310087.865ENSCSAG00000007125CPSF310087.865Chlorocebus_sabaeus
ENSPPYG00000012666CPSF386100.000ENSCHOG00000000180CPSF38567.018Choloepus_hoffmanni
ENSPPYG00000012666CPSF39991.056ENSCPBG00000014074CPSF39991.056Chrysemys_picta_bellii
ENSPPYG00000012666CPSF39964.035ENSCING00000007214-9864.035Ciona_intestinalis
ENSPPYG00000012666CPSF310089.908ENSCANG00000034435CPSF310089.908Colobus_angolensis_palliatus
ENSPPYG00000012666CPSF310094.444ENSCGRG00001013134Cpsf310094.444Cricetulus_griseus_chok1gshd
ENSPPYG00000012666CPSF310094.444ENSCGRG00000018319Cpsf310094.444Cricetulus_griseus_crigri
ENSPPYG00000012666CPSF39982.526ENSCSEG00000002021CPSF39982.071Cynoglossus_semilaevis
ENSPPYG00000012666CPSF39984.118ENSCVAG00000015067CPSF39884.118Cyprinodon_variegatus
ENSPPYG00000012666CPSF39984.706ENSDARG00000027649cpsf39884.706Danio_rerio
ENSPPYG00000012666CPSF310093.285ENSDNOG00000008940CPSF39593.285Dasypus_novemcinctus
ENSPPYG00000012666CPSF39594.470ENSDORG00000014263Cpsf310094.470Dipodomys_ordii
ENSPPYG00000012666CPSF39963.623FBgn0261065Cpsf739863.623Drosophila_melanogaster
ENSPPYG00000012666CPSF39584.793ENSETEG00000003893CPSF310084.793Echinops_telfairi
ENSPPYG00000012666CPSF39974.642ENSEBUG00000009018cpsf39874.785Eptatretus_burgeri
ENSPPYG00000012666CPSF310095.029ENSEASG00005003970CPSF310095.029Equus_asinus_asinus
ENSPPYG00000012666CPSF310095.029ENSECAG00000019911CPSF310095.029Equus_caballus
ENSPPYG00000012666CPSF310079.532ENSEEUG00000015422CPSF310079.532Erinaceus_europaeus
ENSPPYG00000012666CPSF39983.971ENSELUG00000013775cpsf39883.971Esox_lucius
ENSPPYG00000012666CPSF310095.175ENSFCAG00000007852CPSF310095.175Felis_catus
ENSPPYG00000012666CPSF39490.572ENSFALG00000006572CPSF310090.572Ficedula_albicollis
ENSPPYG00000012666CPSF39992.815ENSFDAG00000006317CPSF39992.815Fukomys_damarensis
ENSPPYG00000012666CPSF36268.537ENSFHEG00000012186CPSF39968.537Fundulus_heteroclitus
ENSPPYG00000012666CPSF39980.854ENSFHEG00000014774cpsf39880.854Fundulus_heteroclitus
ENSPPYG00000012666CPSF39982.353ENSGMOG00000003157cpsf39882.353Gadus_morhua
ENSPPYG00000012666CPSF39990.602ENSGALG00000016424CPSF39990.602Gallus_gallus
ENSPPYG00000012666CPSF39178.219ENSGAFG00000019449cpsf39978.219Gambusia_affinis
ENSPPYG00000012666CPSF39983.800ENSGAFG00000008016CPSF39883.800Gambusia_affinis
ENSPPYG00000012666CPSF36786.938ENSGAGG00000025583CPSF39386.938Gopherus_agassizii
ENSPPYG00000012666CPSF310093.133ENSGGOG00000001757CPSF310095.118Gorilla_gorilla
ENSPPYG00000012666CPSF36281.235ENSHBUG00000014332CPSF39981.235Haplochromis_burtoni
ENSPPYG00000012666CPSF39981.351ENSHBUG00000001188cpsf39981.351Haplochromis_burtoni
ENSPPYG00000012666CPSF310092.398ENSHGLG00000000666CPSF39992.398Heterocephalus_glaber_female
ENSPPYG00000012666CPSF310092.398ENSHGLG00100007765CPSF39992.398Heterocephalus_glaber_male
ENSPPYG00000012666CPSF39980.645ENSHCOG00000007251cpsf39980.645Hippocampus_comes
ENSPPYG00000012666CPSF39982.059ENSHCOG00000015957CPSF39782.059Hippocampus_comes
ENSPPYG00000012666CPSF39982.794ENSIPUG00000023488cpsf39882.794Ictalurus_punctatus
ENSPPYG00000012666CPSF310094.444ENSSTOG00000004476CPSF310094.444Ictidomys_tridecemlineatus
ENSPPYG00000012666CPSF310093.275ENSJJAG00000023415Cpsf310093.275Jaculus_jaculus
ENSPPYG00000012666CPSF39983.382ENSKMAG00000007317CPSF39883.382Kryptolebias_marmoratus
ENSPPYG00000012666CPSF39980.560ENSKMAG00000002806cpsf39880.560Kryptolebias_marmoratus
ENSPPYG00000012666CPSF39974.963ENSLBEG00000020569cpsf39474.963Labrus_bergylta
ENSPPYG00000012666CPSF39584.438ENSLBEG00000013492CPSF39884.438Labrus_bergylta
ENSPPYG00000012666CPSF35779.357ENSLBEG00000015018-9979.357Labrus_bergylta
ENSPPYG00000012666CPSF39979.676ENSLACG00000008308CPSF39879.676Latimeria_chalumnae
ENSPPYG00000012666CPSF39985.022ENSLOCG00000016823cpsf39885.022Lepisosteus_oculatus
ENSPPYG00000012666CPSF39993.235ENSLAFG00000009467CPSF310093.235Loxodonta_africana
ENSPPYG00000012666CPSF310095.614ENSMFAG00000001339CPSF310095.614Macaca_fascicularis
ENSPPYG00000012666CPSF39495.363ENSMMUG00000018038CPSF310095.363Macaca_mulatta
ENSPPYG00000012666CPSF310092.049ENSMNEG00000039447CPSF310092.049Macaca_nemestrina
ENSPPYG00000012666CPSF310095.468ENSMLEG00000026825CPSF310095.468Mandrillus_leucophaeus
ENSPPYG00000012666CPSF39180.696ENSMAMG00000008835CPSF39980.696Mastacembelus_armatus
ENSPPYG00000012666CPSF39981.443ENSMAMG00000003076cpsf39881.443Mastacembelus_armatus
ENSPPYG00000012666CPSF39981.351ENSMZEG00005014358cpsf39981.351Maylandia_zebra
ENSPPYG00000012666CPSF39984.265ENSMZEG00005006258CPSF39884.265Maylandia_zebra
ENSPPYG00000012666CPSF39790.555ENSMGAG00000013995CPSF310090.555Meleagris_gallopavo
ENSPPYG00000012666CPSF35797.074ENSMAUG00000000166Cpsf310097.074Mesocricetus_auratus
ENSPPYG00000012666CPSF310089.474ENSMICG00000002363CPSF310089.474Microcebus_murinus
ENSPPYG00000012666CPSF310089.912ENSMOCG00000020067Cpsf310089.912Microtus_ochrogaster
ENSPPYG00000012666CPSF37972.078ENSMMOG00000011923CPSF38478.626Mola_mola
ENSPPYG00000012666CPSF39477.829ENSMMOG00000018212CPSF39877.829Mola_mola
ENSPPYG00000012666CPSF310091.606ENSMODG00000014703CPSF310091.606Monodelphis_domestica
ENSPPYG00000012666CPSF39981.791ENSMALG00000016416cpsf39981.791Monopterus_albus
ENSPPYG00000012666CPSF39278.906ENSMALG00000011474CPSF39978.906Monopterus_albus
ENSPPYG00000012666CPSF310094.152MGP_CAROLIEiJ_G0017640Cpsf310094.152Mus_caroli
ENSPPYG00000012666CPSF310094.152ENSMUSG00000054309Cpsf310094.152Mus_musculus
ENSPPYG00000012666CPSF310094.006MGP_PahariEiJ_G0029397Cpsf310094.006Mus_pahari
ENSPPYG00000012666CPSF310094.152MGP_SPRETEiJ_G0018481Cpsf310094.152Mus_spretus
ENSPPYG00000012666CPSF310094.298ENSMPUG00000013213CPSF310094.298Mustela_putorius_furo
ENSPPYG00000012666CPSF310094.015ENSMLUG00000010636CPSF310094.015Myotis_lucifugus
ENSPPYG00000012666CPSF310094.298ENSNGAG00000019836Cpsf310094.298Nannospalax_galili
ENSPPYG00000012666CPSF39181.746ENSNBRG00000010525CPSF39981.746Neolamprologus_brichardi
ENSPPYG00000012666CPSF39980.910ENSNBRG00000004770cpsf39980.910Neolamprologus_brichardi
ENSPPYG00000012666CPSF310095.614ENSNLEG00000013359CPSF310095.614Nomascus_leucogenys
ENSPPYG00000012666CPSF39174.194ENSMEUG00000013117-8774.194Notamacropus_eugenii
ENSPPYG00000012666CPSF39199.554ENSOPRG00000008902CPSF38799.554Ochotona_princeps
ENSPPYG00000012666CPSF310092.544ENSODEG00000003129CPSF310092.544Octodon_degus
ENSPPYG00000012666CPSF39981.498ENSONIG00000018812cpsf39981.498Oreochromis_niloticus
ENSPPYG00000012666CPSF38290.957ENSOANG00000008577CPSF310090.957Ornithorhynchus_anatinus
ENSPPYG00000012666CPSF310094.591ENSOCUG00000003728CPSF310094.591Oryctolagus_cuniculus
ENSPPYG00000012666CPSF39979.295ENSORLG00000018854cpsf39979.295Oryzias_latipes
ENSPPYG00000012666CPSF39979.295ENSORLG00020013331cpsf39979.295Oryzias_latipes_hni
ENSPPYG00000012666CPSF39979.295ENSORLG00015011017cpsf39979.295Oryzias_latipes_hsok
ENSPPYG00000012666CPSF39979.589ENSOMEG00000010647cpsf39479.589Oryzias_melastigma
ENSPPYG00000012666CPSF310085.234ENSOGAG00000001680CPSF310085.234Otolemur_garnettii
ENSPPYG00000012666CPSF310095.175ENSOARG00000015073CPSF310095.175Ovis_aries
ENSPPYG00000012666CPSF310095.468ENSPPAG00000042457CPSF310095.468Pan_paniscus
ENSPPYG00000012666CPSF310094.883ENSPPRG00000016790CPSF310094.883Panthera_pardus
ENSPPYG00000012666CPSF39994.853ENSPTIG00000003920CPSF310094.488Panthera_tigris_altaica
ENSPPYG00000012666CPSF310095.468ENSPTRG00000011638CPSF310095.468Pan_troglodytes
ENSPPYG00000012666CPSF310095.468ENSPANG00000016798CPSF310095.468Papio_anubis
ENSPPYG00000012666CPSF39985.294ENSPKIG00000023646cpsf39984.806Paramormyrops_kingsleyae
ENSPPYG00000012666CPSF39989.312ENSPSIG00000016144CPSF310089.312Pelodiscus_sinensis
ENSPPYG00000012666CPSF38280.454ENSPMGG00000006141-9980.454Periophthalmus_magnuspinnatus
ENSPPYG00000012666CPSF36279.012ENSPMGG00000015311CPSF39979.012Periophthalmus_magnuspinnatus
ENSPPYG00000012666CPSF310093.860ENSPEMG00000017668Cpsf310093.860Peromyscus_maniculatus_bairdii
ENSPPYG00000012666CPSF37785.102ENSPMAG00000004841cpsf39985.102Petromyzon_marinus
ENSPPYG00000012666CPSF39792.954ENSPCIG00000009823CPSF39892.954Phascolarctos_cinereus
ENSPPYG00000012666CPSF39983.505ENSPFOG00000010418-9883.505Poecilia_formosa
ENSPPYG00000012666CPSF39980.499ENSPFOG00000015922cpsf39980.499Poecilia_formosa
ENSPPYG00000012666CPSF36280.446ENSPLAG00000021300-9980.446Poecilia_latipinna
ENSPPYG00000012666CPSF39980.499ENSPLAG00000000882cpsf39980.499Poecilia_latipinna
ENSPPYG00000012666CPSF39980.645ENSPMEG00000018309cpsf39980.645Poecilia_mexicana
ENSPPYG00000012666CPSF39178.060ENSPREG00000014875cpsf39978.060Poecilia_reticulata
ENSPPYG00000012666CPSF39978.498ENSPREG00000004482CPSF39878.498Poecilia_reticulata
ENSPPYG00000012666CPSF39562.058ENSPCAG00000015042CPSF310062.058Procavia_capensis
ENSPPYG00000012666CPSF310076.067ENSPCOG00000023016CPSF310076.067Propithecus_coquereli
ENSPPYG00000012666CPSF39995.015ENSPVAG00000005324CPSF39995.015Pteropus_vampyrus
ENSPPYG00000012666CPSF37886.372ENSPNYG00000021047CPSF39186.372Pundamilia_nyererei
ENSPPYG00000012666CPSF39981.351ENSPNYG00000004405cpsf39981.351Pundamilia_nyererei
ENSPPYG00000012666CPSF39983.382ENSPNAG00000023060cpsf39883.382Pygocentrus_nattereri
ENSPPYG00000012666CPSF39994.135ENSRNOG00000052418Cpsf39994.135Rattus_norvegicus
ENSPPYG00000012666CPSF310089.474ENSRBIG00000041615CPSF39990.572Rhinopithecus_bieti
ENSPPYG00000012666CPSF310095.468ENSRROG00000033792CPSF310095.468Rhinopithecus_roxellana
ENSPPYG00000012666CPSF39337.987YLR277CYSH19537.987Saccharomyces_cerevisiae
ENSPPYG00000012666CPSF310089.420ENSSBOG00000027263CPSF310089.420Saimiri_boliviensis_boliviensis
ENSPPYG00000012666CPSF310093.275ENSSHAG00000007024CPSF310093.275Sarcophilus_harrisii
ENSPPYG00000012666CPSF39985.316ENSSFOG00015002108cpsf39985.316Scleropages_formosus
ENSPPYG00000012666CPSF39582.923ENSSMAG00000020534CPSF39682.923Scophthalmus_maximus
ENSPPYG00000012666CPSF39981.351ENSSDUG00000002828cpsf39681.351Seriola_dumerili
ENSPPYG00000012666CPSF39983.824ENSSDUG00000018498CPSF39883.824Seriola_dumerili
ENSPPYG00000012666CPSF39983.824ENSSLDG00000005234CPSF39883.824Seriola_lalandi_dorsalis
ENSPPYG00000012666CPSF39981.351ENSSLDG00000008469cpsf39681.351Seriola_lalandi_dorsalis
ENSPPYG00000012666CPSF310076.901ENSSARG00000005186CPSF310076.901Sorex_araneus
ENSPPYG00000012666CPSF39787.779ENSSPUG00000015525CPSF39787.779Sphenodon_punctatus
ENSPPYG00000012666CPSF39981.296ENSSPAG00000018579cpsf39881.296Stegastes_partitus
ENSPPYG00000012666CPSF39983.529ENSSPAG00000002906CPSF39883.529Stegastes_partitus
ENSPPYG00000012666CPSF39994.876ENSSSCG00000020799CPSF39994.876Sus_scrofa
ENSPPYG00000012666CPSF39990.896ENSTGUG00000013016CPSF39990.896Taeniopygia_guttata
ENSPPYG00000012666CPSF36272.973ENSTRUG00000013905CPSF39972.973Takifugu_rubripes
ENSPPYG00000012666CPSF39980.588ENSTRUG00000007030cpsf39780.588Takifugu_rubripes
ENSPPYG00000012666CPSF38585.989ENSTBEG00000002707CPSF38585.989Tupaia_belangeri
ENSPPYG00000012666CPSF38798.387ENSTTRG00000000861CPSF38898.387Tursiops_truncatus
ENSPPYG00000012666CPSF39991.935ENSUAMG00000007535CPSF39891.935Ursus_americanus
ENSPPYG00000012666CPSF39494.745ENSUMAG00000003676CPSF310094.745Ursus_maritimus
ENSPPYG00000012666CPSF39291.009ENSVPAG00000008041CPSF310091.009Vicugna_pacos
ENSPPYG00000012666CPSF310095.029ENSVVUG00000002194CPSF310095.029Vulpes_vulpes
ENSPPYG00000012666CPSF39985.756ENSXETG00000008263cpsf39885.756Xenopus_tropicalis
ENSPPYG00000012666CPSF39980.792ENSXCOG00000019695cpsf39980.792Xiphophorus_couchianus
ENSPPYG00000012666CPSF35778.976ENSXCOG00000000957-8778.976Xiphophorus_couchianus
ENSPPYG00000012666CPSF39983.652ENSXMAG00000027291CPSF39883.652Xiphophorus_maculatus
ENSPPYG00000012666CPSF39980.499ENSXMAG00000009784cpsf39980.499Xiphophorus_maculatus

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