EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPYG00000012846 (Gene tree)
Gene ID: -
Gene Symbol: RIF1
Alias: FLJ10599|FLJ12870
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Pongo_abelii
Status: putative
Strand: Plus strand
Length: 64498 bases
Position: chr2b:40808996-40873493
Accession: 100442982
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPYP00000014340	Rif1_N	PF12231.8	9e-78	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPYT00000014923	RIF1-201	8056	XM_024243156	ENSPPYP00000014340	2471 (aa)	XP_024098923	A0A2J8V7H3

Gene Model

Click here to download ENSPPYG00000012846's gene model file

Pathways

Pathway ID	Pathway Name	Source
pon04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPYG00000012846's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPYG00000012846	RIF1	100	97.492	ENSG00000080345	RIF1	100	97.492	Homo_sapiens
ENSPPYG00000012846	RIF1	99	80.169	ENSAMEG00000008461	RIF1	100	80.129	Ailuropoda_melanoleuca
ENSPPYG00000012846	RIF1	64	50.391	ENSACIG00000017765	rif1	69	50.469	Amphilophus_citrinellus
ENSPPYG00000012846	RIF1	67	47.489	ENSAOCG00000017231	rif1	68	47.489	Amphiprion_ocellaris
ENSPPYG00000012846	RIF1	72	54.964	ENSAPEG00000013228	rif1	67	54.964	Amphiprion_percula
ENSPPYG00000012846	RIF1	65	48.273	ENSATEG00000022887	rif1	68	48.097	Anabas_testudineus
ENSPPYG00000012846	RIF1	84	65.598	ENSAPLG00000007092	RIF1	92	65.306	Anas_platyrhynchos
ENSPPYG00000012846	RIF1	85	55.342	ENSACAG00000003714	RIF1	91	55.342	Anolis_carolinensis
ENSPPYG00000012846	RIF1	100	90.659	ENSANAG00000024840	RIF1	100	90.538	Aotus_nancymaae
ENSPPYG00000012846	RIF1	63	45.523	ENSAMXG00000010910	rif1	52	51.052	Astyanax_mexicanus
ENSPPYG00000012846	RIF1	94	78.986	ENSBTAG00000021020	RIF1	99	78.986	Bos_taurus
ENSPPYG00000012846	RIF1	100	90.016	ENSCJAG00000003138	RIF1	100	89.895	Callithrix_jacchus
ENSPPYG00000012846	RIF1	100	78.842	ENSCAFG00000005670	RIF1	97	78.640	Canis_familiaris
ENSPPYG00000012846	RIF1	100	78.042	ENSCAFG00020016401	RIF1	100	77.840	Canis_lupus_dingo
ENSPPYG00000012846	RIF1	100	79.130	ENSCHIG00000020327	RIF1	100	79.130	Capra_hircus
ENSPPYG00000012846	RIF1	99	79.742	ENSTSYG00000008861	RIF1	100	79.742	Carlito_syrichta
ENSPPYG00000012846	RIF1	79	83.721	ENSCAPG00000008957	RIF1	96	83.721	Cavia_aperea
ENSPPYG00000012846	RIF1	99	71.360	ENSCPOG00000037898	RIF1	99	71.187	Cavia_porcellus
ENSPPYG00000012846	RIF1	100	89.446	ENSCCAG00000024760	RIF1	100	89.284	Cebus_capucinus
ENSPPYG00000012846	RIF1	100	95.429	ENSCATG00000033353	RIF1	100	95.307	Cercocebus_atys
ENSPPYG00000012846	RIF1	96	74.466	ENSCLAG00000001517	RIF1	99	74.330	Chinchilla_lanigera
ENSPPYG00000012846	RIF1	100	95.186	ENSCSAG00000016089	RIF1	100	95.065	Chlorocebus_sabaeus
ENSPPYG00000012846	RIF1	97	77.826	ENSCHOG00000007187	RIF1	97	77.826	Choloepus_hoffmanni
ENSPPYG00000012846	RIF1	90	71.893	ENSCPBG00000025885	RIF1	95	72.997	Chrysemys_picta_bellii
ENSPPYG00000012846	RIF1	100	93.813	ENSCANG00000028962	RIF1	100	95.011	Colobus_angolensis_palliatus
ENSPPYG00000012846	RIF1	99	70.602	ENSCGRG00001024589	Rif1	100	70.470	Cricetulus_griseus_chok1gshd
ENSPPYG00000012846	RIF1	99	71.627	ENSCGRG00000010713	Rif1	100	71.591	Cricetulus_griseus_crigri
ENSPPYG00000012846	RIF1	64	48.946	ENSCVAG00000022479	rif1	68	48.946	Cyprinodon_variegatus
ENSPPYG00000012846	RIF1	62	51.730	ENSDARG00000062650	rif1	65	51.481	Danio_rerio
ENSPPYG00000012846	RIF1	99	77.206	ENSDNOG00000011194	RIF1	97	77.206	Dasypus_novemcinctus
ENSPPYG00000012846	RIF1	94	72.273	ENSETEG00000012421	RIF1	92	72.197	Echinops_telfairi
ENSPPYG00000012846	RIF1	96	88.035	ENSEASG00005023434	RIF1	98	91.749	Equus_asinus_asinus
ENSPPYG00000012846	RIF1	97	90.483	ENSECAG00000012679	RIF1	100	90.483	Equus_caballus
ENSPPYG00000012846	RIF1	62	50.996	ENSELUG00000006826	rif1	56	50.830	Esox_lucius
ENSPPYG00000012846	RIF1	100	79.316	ENSFCAG00000029742	RIF1	100	79.437	Felis_catus
ENSPPYG00000012846	RIF1	78	63.720	ENSFALG00000013874	RIF1	91	64.329	Ficedula_albicollis
ENSPPYG00000012846	RIF1	99	75.827	ENSFDAG00000006538	RIF1	99	75.787	Fukomys_damarensis
ENSPPYG00000012846	RIF1	62	50.200	ENSFHEG00000013721	rif1	65	50.238	Fundulus_heteroclitus
ENSPPYG00000012846	RIF1	54	51.261	ENSGMOG00000003517	rif1	81	51.261	Gadus_morhua
ENSPPYG00000012846	RIF1	79	64.412	ENSGALG00000012484	RIF1	91	64.412	Gallus_gallus
ENSPPYG00000012846	RIF1	66	54.025	ENSGAFG00000017196	rif1	76	54.159	Gambusia_affinis
ENSPPYG00000012846	RIF1	59	55.285	ENSGACG00000008579	rif1	66	54.800	Gasterosteus_aculeatus
ENSPPYG00000012846	RIF1	88	71.557	ENSGAGG00000012595	RIF1	97	72.673	Gopherus_agassizii
ENSPPYG00000012846	RIF1	90	98.999	ENSGGOG00000040178	RIF1	96	98.999	Gorilla_gorilla
ENSPPYG00000012846	RIF1	69	49.851	ENSHBUG00000007125	rif1	80	49.776	Haplochromis_burtoni
ENSPPYG00000012846	RIF1	95	75.596	ENSHGLG00100009807	RIF1	99	75.511	Heterocephalus_glaber_male
ENSPPYG00000012846	RIF1	64	48.524	ENSHCOG00000015943	rif1	60	48.418	Hippocampus_comes
ENSPPYG00000012846	RIF1	100	77.724	ENSSTOG00000020712	RIF1	100	77.595	Ictidomys_tridecemlineatus
ENSPPYG00000012846	RIF1	99	69.528	ENSJJAG00000023000	Rif1	100	69.476	Jaculus_jaculus
ENSPPYG00000012846	RIF1	64	49.568	ENSKMAG00000002852	rif1	67	49.568	Kryptolebias_marmoratus
ENSPPYG00000012846	RIF1	61	56.000	ENSLBEG00000023196	rif1	57	56.000	Labrus_bergylta
ENSPPYG00000012846	RIF1	85	62.985	ENSLACG00000005425	RIF1	89	62.985	Latimeria_chalumnae
ENSPPYG00000012846	RIF1	62	54.101	ENSLOCG00000002657	rif1	82	51.935	Lepisosteus_oculatus
ENSPPYG00000012846	RIF1	99	78.252	ENSLAFG00000009796	RIF1	100	78.235	Loxodonta_africana
ENSPPYG00000012846	RIF1	100	95.429	ENSMFAG00000032233	RIF1	100	95.307	Macaca_fascicularis
ENSPPYG00000012846	RIF1	100	95.388	ENSMMUG00000008611	RIF1	100	95.267	Macaca_mulatta
ENSPPYG00000012846	RIF1	100	95.348	ENSMNEG00000031616	RIF1	100	95.227	Macaca_nemestrina
ENSPPYG00000012846	RIF1	100	95.469	ENSMLEG00000042945	RIF1	100	95.348	Mandrillus_leucophaeus
ENSPPYG00000012846	RIF1	67	53.273	ENSMAMG00000001745	rif1	72	53.545	Mastacembelus_armatus
ENSPPYG00000012846	RIF1	66	49.660	ENSMZEG00005020920	rif1	72	49.512	Maylandia_zebra
ENSPPYG00000012846	RIF1	84	60.055	ENSMGAG00000012732	RIF1	92	60.055	Meleagris_gallopavo
ENSPPYG00000012846	RIF1	94	90.251	ENSMAUG00000013158	Rif1	99	90.251	Mesocricetus_auratus
ENSPPYG00000012846	RIF1	100	84.482	ENSMICG00000046127	RIF1	100	84.315	Microcebus_murinus
ENSPPYG00000012846	RIF1	99	69.915	ENSMOCG00000009381	Rif1	100	69.695	Microtus_ochrogaster
ENSPPYG00000012846	RIF1	62	49.362	ENSMMOG00000006519	rif1	64	49.285	Mola_mola
ENSPPYG00000012846	RIF1	100	60.072	ENSMODG00000003703	RIF1	100	59.744	Monodelphis_domestica
ENSPPYG00000012846	RIF1	63	49.438	ENSMALG00000016759	rif1	72	49.355	Monopterus_albus
ENSPPYG00000012846	RIF1	99	69.141	MGP_CAROLIEiJ_G0023555	Rif1	100	69.221	Mus_caroli
ENSPPYG00000012846	RIF1	99	70.040	ENSMUSG00000036202	Rif1	100	70.120	Mus_musculus
ENSPPYG00000012846	RIF1	99	68.294	MGP_PahariEiJ_G0025006	Rif1	100	68.253	Mus_pahari
ENSPPYG00000012846	RIF1	99	69.811	MGP_SPRETEiJ_G0024476	Rif1	100	69.811	Mus_spretus
ENSPPYG00000012846	RIF1	100	79.621	ENSMPUG00000000371	RIF1	100	79.621	Mustela_putorius_furo
ENSPPYG00000012846	RIF1	90	77.095	ENSMLUG00000003376	RIF1	100	77.095	Myotis_lucifugus
ENSPPYG00000012846	RIF1	100	73.127	ENSNGAG00000009268	Rif1	100	72.823	Nannospalax_galili
ENSPPYG00000012846	RIF1	62	50.688	ENSNBRG00000014257	rif1	71	48.788	Neolamprologus_brichardi
ENSPPYG00000012846	RIF1	100	95.046	ENSNLEG00000010955	RIF1	100	95.046	Nomascus_leucogenys
ENSPPYG00000012846	RIF1	80	78.667	ENSMEUG00000007601	-	82	78.667	Notamacropus_eugenii
ENSPPYG00000012846	RIF1	99	72.130	ENSODEG00000003950	RIF1	99	72.453	Octodon_degus
ENSPPYG00000012846	RIF1	65	50.421	ENSONIG00000013657	rif1	60	50.265	Oreochromis_niloticus
ENSPPYG00000012846	RIF1	84	65.328	ENSOANG00000006078	-	86	65.328	Ornithorhynchus_anatinus
ENSPPYG00000012846	RIF1	100	76.873	ENSOCUG00000017435	RIF1	100	76.694	Oryctolagus_cuniculus
ENSPPYG00000012846	RIF1	64	48.259	ENSORLG00020001302	rif1	69	48.806	Oryzias_latipes_hni
ENSPPYG00000012846	RIF1	62	48.576	ENSORLG00015000009	rif1	66	48.655	Oryzias_latipes_hsok
ENSPPYG00000012846	RIF1	63	49.084	ENSOMEG00000021513	rif1	68	48.923	Oryzias_melastigma
ENSPPYG00000012846	RIF1	99	81.492	ENSOGAG00000006141	RIF1	99	81.371	Otolemur_garnettii
ENSPPYG00000012846	RIF1	100	79.210	ENSOARG00000008930	RIF1	100	79.210	Ovis_aries
ENSPPYG00000012846	RIF1	100	97.291	ENSPPAG00000023754	RIF1	100	97.291	Pan_paniscus
ENSPPYG00000012846	RIF1	100	79.324	ENSPPRG00000003618	RIF1	100	79.445	Panthera_pardus
ENSPPYG00000012846	RIF1	100	79.364	ENSPTIG00000020652	RIF1	100	79.485	Panthera_tigris_altaica
ENSPPYG00000012846	RIF1	100	97.452	ENSPTRG00000012534	RIF1	100	97.452	Pan_troglodytes
ENSPPYG00000012846	RIF1	100	95.146	ENSPANG00000008525	RIF1	100	95.024	Papio_anubis
ENSPPYG00000012846	RIF1	63	51.813	ENSPKIG00000004267	rif1	68	51.834	Paramormyrops_kingsleyae
ENSPPYG00000012846	RIF1	65	46.704	ENSPMGG00000016141	rif1	79	45.146	Periophthalmus_magnuspinnatus
ENSPPYG00000012846	RIF1	99	72.036	ENSPEMG00000000446	Rif1	99	71.848	Peromyscus_maniculatus_bairdii
ENSPPYG00000012846	RIF1	56	51.473	ENSPFOG00000000554	-	66	51.473	Poecilia_formosa
ENSPPYG00000012846	RIF1	62	51.435	ENSPFOG00000017804	rif1	68	51.566	Poecilia_formosa
ENSPPYG00000012846	RIF1	62	51.491	ENSPLAG00000017945	rif1	71	51.496	Poecilia_latipinna
ENSPPYG00000012846	RIF1	53	49.853	ENSPMEG00000006897	-	62	49.853	Poecilia_mexicana
ENSPPYG00000012846	RIF1	55	64.894	ENSPREG00000018052	rif1	65	54.405	Poecilia_reticulata
ENSPPYG00000012846	RIF1	83	87.129	ENSPCAG00000009032	RIF1	83	87.129	Procavia_capensis
ENSPPYG00000012846	RIF1	100	84.712	ENSPCOG00000027888	RIF1	100	84.712	Propithecus_coquereli
ENSPPYG00000012846	RIF1	93	89.228	ENSPVAG00000014276	RIF1	95	89.228	Pteropus_vampyrus
ENSPPYG00000012846	RIF1	63	49.324	ENSPNYG00000012940	rif1	68	49.245	Pundamilia_nyererei
ENSPPYG00000012846	RIF1	62	53.548	ENSPNAG00000016685	rif1	64	53.548	Pygocentrus_nattereri
ENSPPYG00000012846	RIF1	99	68.501	ENSRNOG00000054901	Rif1	100	68.449	Rattus_norvegicus
ENSPPYG00000012846	RIF1	100	94.620	ENSRBIG00000003704	RIF1	100	94.620	Rhinopithecus_bieti
ENSPPYG00000012846	RIF1	100	95.712	ENSRROG00000028206	RIF1	100	95.712	Rhinopithecus_roxellana
ENSPPYG00000012846	RIF1	97	96.774	ENSSBOG00000029530	RIF1	100	96.774	Saimiri_boliviensis_boliviensis
ENSPPYG00000012846	RIF1	99	59.697	ENSSHAG00000018552	RIF1	100	58.668	Sarcophilus_harrisii
ENSPPYG00000012846	RIF1	63	53.468	ENSSFOG00015021539	rif1	70	53.150	Scleropages_formosus
ENSPPYG00000012846	RIF1	50	49.450	ENSSMAG00000011704	rif1	50	48.673	Scophthalmus_maximus
ENSPPYG00000012846	RIF1	62	50.768	ENSSDUG00000015632	rif1	71	49.394	Seriola_dumerili
ENSPPYG00000012846	RIF1	63	83.390	ENSSARG00000007161	-	64	83.390	Sorex_araneus
ENSPPYG00000012846	RIF1	89	56.343	ENSSPUG00000003062	RIF1	96	56.059	Sphenodon_punctatus
ENSPPYG00000012846	RIF1	50	57.787	ENSSPAG00000018359	rif1	76	57.787	Stegastes_partitus
ENSPPYG00000012846	RIF1	100	79.783	ENSSSCG00000016395	RIF1	100	79.340	Sus_scrofa
ENSPPYG00000012846	RIF1	64	49.881	ENSTRUG00000015808	rif1	70	49.255	Takifugu_rubripes
ENSPPYG00000012846	RIF1	72	48.204	ENSTNIG00000011538	rif1	77	48.090	Tetraodon_nigroviridis
ENSPPYG00000012846	RIF1	82	88.608	ENSTBEG00000016082	RIF1	81	88.608	Tupaia_belangeri
ENSPPYG00000012846	RIF1	100	80.467	ENSTTRG00000011190	RIF1	100	80.467	Tursiops_truncatus
ENSPPYG00000012846	RIF1	90	79.545	ENSUAMG00000026385	RIF1	99	79.501	Ursus_americanus
ENSPPYG00000012846	RIF1	100	80.395	ENSUMAG00000000337	RIF1	100	80.354	Ursus_maritimus
ENSPPYG00000012846	RIF1	100	78.445	ENSVPAG00000002162	RIF1	100	78.284	Vicugna_pacos
ENSPPYG00000012846	RIF1	100	78.073	ENSVVUG00000011293	RIF1	100	77.872	Vulpes_vulpes
ENSPPYG00000012846	RIF1	99	44.046	ENSXETG00000004530	rif1	99	43.694	Xenopus_tropicalis
ENSPPYG00000012846	RIF1	63	48.598	ENSXMAG00000000506	rif1	75	48.794	Xiphophorus_maculatus