EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPYG00000013417 (Gene tree)
Gene ID: 100174211
Gene Symbol: MBD4
Alias: MED1
Full Name: methyl-CpG binding domain 4%2C DNA glycosylase
Gene Type: protein_coding
Species: Pongo_abelii
Status: putative
Strand: Plus strand
Length: 9417 bases
Position: chr3:3207736-3217152
Accession: 6919
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPYP00000015005	MBD	PF01429.19	4.2e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPYT00000015605	MBD4-201	2806	-	ENSPPYP00000015005	573 (aa)	-	H2P9D2

Gene Model

Click here to download ENSPPYG00000013417's gene model file

Pathways

Pathway ID	Pathway Name	Source
pon03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPYG00000013417's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPYG00000013417	MBD4	100	97.391	ENSG00000129071	MBD4	100	97.391	Homo_sapiens
ENSPPYG00000013417	MBD4	99	77.163	ENSAMEG00000004562	MBD4	99	77.163	Ailuropoda_melanoleuca
ENSPPYG00000013417	MBD4	85	41.365	ENSAOCG00000001157	mbd4	95	41.800	Amphiprion_ocellaris
ENSPPYG00000013417	MBD4	85	42.400	ENSAPEG00000016131	mbd4	95	42.829	Amphiprion_percula
ENSPPYG00000013417	MBD4	55	78.824	ENSATEG00000014594	MBD4	60	78.824	Anabas_testudineus
ENSPPYG00000013417	MBD4	99	71.080	ENSBTAG00000021645	MBD4	100	71.080	Bos_taurus
ENSPPYG00000013417	MBD4	100	86.528	ENSCJAG00000017293	MBD4	100	86.528	Callithrix_jacchus
ENSPPYG00000013417	MBD4	99	75.910	ENSCAFG00000004867	MBD4	99	75.910	Canis_familiaris
ENSPPYG00000013417	MBD4	99	75.910	ENSCAFG00020007082	MBD4	99	75.910	Canis_lupus_dingo
ENSPPYG00000013417	MBD4	99	69.861	ENSCHIG00000009760	MBD4	100	69.861	Capra_hircus
ENSPPYG00000013417	MBD4	100	87.565	ENSCCAG00000029796	MBD4	100	87.565	Cebus_capucinus
ENSPPYG00000013417	MBD4	100	93.194	ENSCATG00000035211	MBD4	100	93.194	Cercocebus_atys
ENSPPYG00000013417	MBD4	98	70.351	ENSCLAG00000008974	MBD4	99	70.351	Chinchilla_lanigera
ENSPPYG00000013417	MBD4	100	92.496	ENSCSAG00000009037	MBD4	100	92.496	Chlorocebus_sabaeus
ENSPPYG00000013417	MBD4	87	49.617	ENSCPBG00000014704	MBD4	89	49.520	Chrysemys_picta_bellii
ENSPPYG00000013417	MBD4	100	93.194	ENSCANG00000007120	MBD4	100	93.194	Colobus_angolensis_palliatus
ENSPPYG00000013417	MBD4	99	67.365	ENSCGRG00001003507	Mbd4	100	67.714	Cricetulus_griseus_chok1gshd
ENSPPYG00000013417	MBD4	99	67.365	ENSCGRG00000010974	Mbd4	100	67.714	Cricetulus_griseus_crigri
ENSPPYG00000013417	MBD4	99	76.182	ENSDNOG00000049619	MBD4	100	76.182	Dasypus_novemcinctus
ENSPPYG00000013417	MBD4	80	62.821	ENSDORG00000000902	-	97	62.264	Dipodomys_ordii
ENSPPYG00000013417	MBD4	99	78.397	ENSEASG00005014800	MBD4	100	78.397	Equus_asinus_asinus
ENSPPYG00000013417	MBD4	99	78.571	ENSECAG00000022106	MBD4	100	78.571	Equus_caballus
ENSPPYG00000013417	MBD4	95	60.727	ENSEEUG00000011459	MBD4	99	60.727	Erinaceus_europaeus
ENSPPYG00000013417	MBD4	99	78.374	ENSFCAG00000000083	MBD4	99	78.374	Felis_catus
ENSPPYG00000013417	MBD4	82	43.825	ENSFALG00000013663	MBD4	99	44.862	Ficedula_albicollis
ENSPPYG00000013417	MBD4	85	40.404	ENSGMOG00000013830	mbd4	62	59.914	Gadus_morhua
ENSPPYG00000013417	MBD4	87	50.383	ENSGAGG00000018644	MBD4	89	50.383	Gopherus_agassizii
ENSPPYG00000013417	MBD4	100	95.353	ENSGGOG00000010698	MBD4	100	95.353	Gorilla_gorilla
ENSPPYG00000013417	MBD4	98	72.105	ENSHGLG00000009034	MBD4	99	72.105	Heterocephalus_glaber_female
ENSPPYG00000013417	MBD4	98	72.105	ENSHGLG00100000135	MBD4	99	72.105	Heterocephalus_glaber_male
ENSPPYG00000013417	MBD4	99	73.638	ENSSTOG00000020663	MBD4	100	73.638	Ictidomys_tridecemlineatus
ENSPPYG00000013417	MBD4	85	40.194	ENSLBEG00000005669	MBD4	80	49.275	Labrus_bergylta
ENSPPYG00000013417	MBD4	99	75.043	ENSLAFG00000010609	MBD4	99	75.043	Loxodonta_africana
ENSPPYG00000013417	MBD4	100	92.321	ENSMFAG00000002266	MBD4	100	92.321	Macaca_fascicularis
ENSPPYG00000013417	MBD4	100	90.361	ENSMMUG00000012723	MBD4	100	90.361	Macaca_mulatta
ENSPPYG00000013417	MBD4	96	91.803	ENSMNEG00000029752	MBD4	99	91.803	Macaca_nemestrina
ENSPPYG00000013417	MBD4	100	93.194	ENSMLEG00000024859	MBD4	100	93.194	Mandrillus_leucophaeus
ENSPPYG00000013417	MBD4	100	81.174	ENSMICG00000008022	MBD4	100	81.174	Microcebus_murinus
ENSPPYG00000013417	MBD4	68	48.101	ENSMOCG00000002466	-	97	47.595	Microtus_ochrogaster
ENSPPYG00000013417	MBD4	86	59.481	ENSMODG00000006399	-	99	59.082	Monodelphis_domestica
ENSPPYG00000013417	MBD4	86	43.775	ENSMALG00000021517	mbd4	87	43.662	Monopterus_albus
ENSPPYG00000013417	MBD4	99	65.969	MGP_CAROLIEiJ_G0028760	Mbd4	100	65.969	Mus_caroli
ENSPPYG00000013417	MBD4	99	65.620	ENSMUSG00000030322	Mbd4	100	65.620	Mus_musculus
ENSPPYG00000013417	MBD4	99	66.551	MGP_PahariEiJ_G0022511	-	100	66.551	Mus_pahari
ENSPPYG00000013417	MBD4	99	65.096	MGP_SPRETEiJ_G0029788	Mbd4	100	65.096	Mus_spretus
ENSPPYG00000013417	MBD4	99	75.436	ENSMPUG00000017195	MBD4	99	75.436	Mustela_putorius_furo
ENSPPYG00000013417	MBD4	94	78.676	ENSMLUG00000014766	MBD4	99	78.676	Myotis_lucifugus
ENSPPYG00000013417	MBD4	100	95.682	ENSNLEG00000005337	MBD4	100	95.682	Nomascus_leucogenys
ENSPPYG00000013417	MBD4	99	64.249	ENSOPRG00000000473	MBD4	99	64.249	Ochotona_princeps
ENSPPYG00000013417	MBD4	85	39.513	ENSONIG00000017212	mbd4	56	70.647	Oreochromis_niloticus
ENSPPYG00000013417	MBD4	74	44.884	ENSOANG00000004589	-	96	44.884	Ornithorhynchus_anatinus
ENSPPYG00000013417	MBD4	99	67.869	ENSOCUG00000013006	MBD4	100	67.869	Oryctolagus_cuniculus
ENSPPYG00000013417	MBD4	99	76.870	ENSOGAG00000010236	MBD4	100	76.870	Otolemur_garnettii
ENSPPYG00000013417	MBD4	99	70.035	ENSOARG00000014699	MBD4	100	70.035	Ovis_aries
ENSPPYG00000013417	MBD4	100	97.043	ENSPPAG00000036528	MBD4	100	97.043	Pan_paniscus
ENSPPYG00000013417	MBD4	99	78.147	ENSPPRG00000016480	MBD4	99	78.147	Panthera_pardus
ENSPPYG00000013417	MBD4	100	95.869	ENSPTRG00000015377	MBD4	100	95.869	Pan_troglodytes
ENSPPYG00000013417	MBD4	100	91.710	ENSPANG00000015047	MBD4	100	91.710	Papio_anubis
ENSPPYG00000013417	MBD4	87	49.536	ENSPSIG00000007892	MBD4	90	49.536	Pelodiscus_sinensis
ENSPPYG00000013417	MBD4	90	60.345	ENSPEMG00000006226	Mbd4	97	60.345	Peromyscus_maniculatus_bairdii
ENSPPYG00000013417	MBD4	92	57.037	ENSPCIG00000002276	-	100	56.667	Phascolarctos_cinereus
ENSPPYG00000013417	MBD4	95	70.886	ENSPCAG00000012915	MBD4	99	70.886	Procavia_capensis
ENSPPYG00000013417	MBD4	99	79.376	ENSPVAG00000005238	MBD4	99	79.376	Pteropus_vampyrus
ENSPPYG00000013417	MBD4	99	65.972	ENSRNOG00000010919	Mbd4	100	65.972	Rattus_norvegicus
ENSPPYG00000013417	MBD4	100	93.892	ENSRBIG00000027722	MBD4	100	93.892	Rhinopithecus_bieti
ENSPPYG00000013417	MBD4	100	93.717	ENSRROG00000029136	MBD4	100	93.717	Rhinopithecus_roxellana
ENSPPYG00000013417	MBD4	99	87.522	ENSSBOG00000016810	MBD4	100	87.002	Saimiri_boliviensis_boliviensis
ENSPPYG00000013417	MBD4	93	55.292	ENSSHAG00000012953	MBD4	94	55.292	Sarcophilus_harrisii
ENSPPYG00000013417	MBD4	85	42.369	ENSSFOG00015016292	mbd4	95	42.369	Scleropages_formosus
ENSPPYG00000013417	MBD4	67	73.545	ENSSMAG00000013958	-	68	43.898	Scophthalmus_maximus
ENSPPYG00000013417	MBD4	80	61.638	ENSSARG00000004496	-	80	61.638	Sorex_araneus
ENSPPYG00000013417	MBD4	86	48.851	ENSSPUG00000017344	MBD4	91	48.851	Sphenodon_punctatus
ENSPPYG00000013417	MBD4	99	75.610	ENSSSCG00000033303	MBD4	100	75.610	Sus_scrofa
ENSPPYG00000013417	MBD4	85	38.252	ENSTNIG00000017927	mbd4	58	63.874	Tetraodon_nigroviridis
ENSPPYG00000013417	MBD4	87	60.550	ENSTBEG00000003041	-	86	60.550	Tupaia_belangeri
ENSPPYG00000013417	MBD4	97	76.460	ENSTTRG00000011265	MBD4	100	76.460	Tursiops_truncatus
ENSPPYG00000013417	MBD4	86	80.200	ENSUAMG00000000814	MBD4	99	80.200	Ursus_americanus
ENSPPYG00000013417	MBD4	99	78.049	ENSUMAG00000017542	MBD4	100	78.049	Ursus_maritimus
ENSPPYG00000013417	MBD4	67	72.018	ENSVPAG00000004040	-	70	72.018	Vicugna_pacos
ENSPPYG00000013417	MBD4	99	75.563	ENSVVUG00000014222	MBD4	99	75.563	Vulpes_vulpes