EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPYG00000014172 (Gene tree)
Gene ID: -
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Pongo_abelii
Status: putative
Strand: Minus strand
Length: 136660 bases
Position: chr3:144856771-144993430
Accession: 100449590
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPYP00000015851	XRN_N	PF03159.18	3.3e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPYT00000016478	XRN1-201	10024	XM_024245012	ENSPPYP00000015851	1706 (aa)	XP_024100780	H2PBM7

Gene Model

Click here to download ENSPPYG00000014172's gene model file

Pathways

Pathway ID	Pathway Name	Source
pon03008	Ribosome biogenesis in eukaryotes	KEGG
pon03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPYG00000014172's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPYG00000014172	XRN1	100	98.359	ENSG00000114127	XRN1	100	99.394	Homo_sapiens
ENSPPYG00000014172	XRN1	100	61.214	ENSAPOG00000000622	xrn1	93	76.546	Acanthochromis_polyacanthus
ENSPPYG00000014172	XRN1	100	90.675	ENSAMEG00000012538	XRN1	100	90.675	Ailuropoda_melanoleuca
ENSPPYG00000014172	XRN1	95	72.498	ENSACIG00000001057	xrn1	99	72.661	Amphilophus_citrinellus
ENSPPYG00000014172	XRN1	100	60.248	ENSAOCG00000014097	xrn1	95	69.679	Amphiprion_ocellaris
ENSPPYG00000014172	XRN1	100	60.168	ENSAPEG00000006620	xrn1	100	60.404	Amphiprion_percula
ENSPPYG00000014172	XRN1	94	70.963	ENSATEG00000009752	xrn1	99	71.032	Anabas_testudineus
ENSPPYG00000014172	XRN1	99	75.504	ENSAPLG00000004905	XRN1	100	75.504	Anas_platyrhynchos
ENSPPYG00000014172	XRN1	100	71.940	ENSACAG00000004985	XRN1	100	71.772	Anolis_carolinensis
ENSPPYG00000014172	XRN1	100	96.426	ENSANAG00000029013	XRN1	100	96.426	Aotus_nancymaae
ENSPPYG00000014172	XRN1	100	60.158	ENSACLG00000004806	xrn1	99	60.259	Astatotilapia_calliptera
ENSPPYG00000014172	XRN1	99	60.421	ENSAMXG00000019370	xrn1	96	93.269	Astyanax_mexicanus
ENSPPYG00000014172	XRN1	100	91.916	ENSBTAG00000011524	XRN1	100	91.916	Bos_taurus
ENSPPYG00000014172	XRN1	70	38.914	WBGene00012730	xrn-1	80	38.737	Caenorhabditis_elegans
ENSPPYG00000014172	XRN1	100	96.366	ENSCJAG00000001872	XRN1	100	96.366	Callithrix_jacchus
ENSPPYG00000014172	XRN1	100	92.966	ENSCAFG00000007783	XRN1	100	92.966	Canis_familiaris
ENSPPYG00000014172	XRN1	100	91.112	ENSCAFG00020009120	XRN1	99	94.000	Canis_lupus_dingo
ENSPPYG00000014172	XRN1	99	89.380	ENSCHIG00000019192	XRN1	99	89.380	Capra_hircus
ENSPPYG00000014172	XRN1	100	93.267	ENSTSYG00000002705	XRN1	100	93.267	Carlito_syrichta
ENSPPYG00000014172	XRN1	55	76.617	ENSCAPG00000004604	-	99	76.617	Cavia_aperea
ENSPPYG00000014172	XRN1	100	96.837	ENSCCAG00000034800	XRN1	99	98.732	Cebus_capucinus
ENSPPYG00000014172	XRN1	100	97.891	ENSCATG00000041794	XRN1	100	97.891	Cercocebus_atys
ENSPPYG00000014172	XRN1	100	87.113	ENSCLAG00000001451	XRN1	99	96.355	Chinchilla_lanigera
ENSPPYG00000014172	XRN1	100	97.891	ENSCSAG00000011265	XRN1	100	97.891	Chlorocebus_sabaeus
ENSPPYG00000014172	XRN1	62	98.701	ENSCHOG00000013961	-	62	98.701	Choloepus_hoffmanni
ENSPPYG00000014172	XRN1	70	45.240	ENSCSAVG00000008584	-	98	44.646	Ciona_savignyi
ENSPPYG00000014172	XRN1	100	97.773	ENSCANG00000037495	XRN1	100	97.773	Colobus_angolensis_palliatus
ENSPPYG00000014172	XRN1	100	87.099	ENSCGRG00001019411	Xrn1	99	96.197	Cricetulus_griseus_chok1gshd
ENSPPYG00000014172	XRN1	100	87.099	ENSCGRG00000012464	Xrn1	99	96.197	Cricetulus_griseus_crigri
ENSPPYG00000014172	XRN1	100	55.755	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSPPYG00000014172	XRN1	66	67.368	ENSCVAG00000013089	xrn1	99	71.781	Cyprinodon_variegatus
ENSPPYG00000014172	XRN1	99	62.670	ENSDARG00000091652	xrn1	98	79.958	Danio_rerio
ENSPPYG00000014172	XRN1	100	86.379	ENSDORG00000013833	Xrn1	100	86.379	Dipodomys_ordii
ENSPPYG00000014172	XRN1	74	40.016	FBgn0020261	pcm	76	39.923	Drosophila_melanogaster
ENSPPYG00000014172	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSPPYG00000014172	XRN1	100	92.912	ENSEASG00005002687	XRN1	99	96.038	Equus_asinus_asinus
ENSPPYG00000014172	XRN1	100	92.912	ENSECAG00000008301	XRN1	100	92.912	Equus_caballus
ENSPPYG00000014172	XRN1	92	82.796	ENSEEUG00000011323	XRN1	92	82.796	Erinaceus_europaeus
ENSPPYG00000014172	XRN1	100	61.243	ENSELUG00000000169	xrn1	100	61.199	Esox_lucius
ENSPPYG00000014172	XRN1	100	89.052	ENSFCAG00000027589	XRN1	99	96.044	Felis_catus
ENSPPYG00000014172	XRN1	100	74.136	ENSFALG00000007021	XRN1	100	74.080	Ficedula_albicollis
ENSPPYG00000014172	XRN1	100	88.259	ENSFDAG00000020494	XRN1	99	95.880	Fukomys_damarensis
ENSPPYG00000014172	XRN1	84	68.452	ENSGMOG00000006396	xrn1	83	68.452	Gadus_morhua
ENSPPYG00000014172	XRN1	100	74.581	ENSGALG00000002706	XRN1	100	74.581	Gallus_gallus
ENSPPYG00000014172	XRN1	100	59.533	ENSGACG00000014328	xrn1	100	59.875	Gasterosteus_aculeatus
ENSPPYG00000014172	XRN1	95	77.254	ENSGAGG00000017535	XRN1	99	77.254	Gopherus_agassizii
ENSPPYG00000014172	XRN1	100	98.594	ENSGGOG00000008047	XRN1	100	98.594	Gorilla_gorilla
ENSPPYG00000014172	XRN1	100	60.334	ENSHBUG00000005908	xrn1	98	73.101	Haplochromis_burtoni
ENSPPYG00000014172	XRN1	100	89.296	ENSHGLG00000014476	XRN1	99	96.672	Heterocephalus_glaber_female
ENSPPYG00000014172	XRN1	100	89.296	ENSHGLG00100015130	XRN1	99	96.672	Heterocephalus_glaber_male
ENSPPYG00000014172	XRN1	98	69.775	ENSHCOG00000014062	xrn1	99	69.844	Hippocampus_comes
ENSPPYG00000014172	XRN1	99	62.400	ENSIPUG00000015229	xrn1	99	62.707	Ictalurus_punctatus
ENSPPYG00000014172	XRN1	100	90.774	ENSSTOG00000013552	XRN1	99	97.623	Ictidomys_tridecemlineatus
ENSPPYG00000014172	XRN1	98	85.997	ENSJJAG00000010863	Xrn1	99	94.032	Jaculus_jaculus
ENSPPYG00000014172	XRN1	100	59.148	ENSKMAG00000021356	xrn1	94	75.949	Kryptolebias_marmoratus
ENSPPYG00000014172	XRN1	100	60.249	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSPPYG00000014172	XRN1	100	69.135	ENSLACG00000009020	XRN1	100	69.057	Latimeria_chalumnae
ENSPPYG00000014172	XRN1	100	65.767	ENSLOCG00000007944	xrn1	100	65.823	Lepisosteus_oculatus
ENSPPYG00000014172	XRN1	63	95.978	ENSLAFG00000015426	XRN1	100	95.978	Loxodonta_africana
ENSPPYG00000014172	XRN1	100	97.891	ENSMFAG00000032599	XRN1	100	97.891	Macaca_fascicularis
ENSPPYG00000014172	XRN1	100	97.950	ENSMMUG00000014038	XRN1	100	97.950	Macaca_mulatta
ENSPPYG00000014172	XRN1	100	97.657	ENSMNEG00000034217	XRN1	100	97.657	Macaca_nemestrina
ENSPPYG00000014172	XRN1	94	71.113	ENSMAMG00000013219	xrn1	94	77.526	Mastacembelus_armatus
ENSPPYG00000014172	XRN1	100	59.921	ENSMZEG00005015099	xrn1	99	60.147	Maylandia_zebra
ENSPPYG00000014172	XRN1	99	74.437	ENSMGAG00000006333	XRN1	100	74.437	Meleagris_gallopavo
ENSPPYG00000014172	XRN1	100	94.152	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSPPYG00000014172	XRN1	58	95.087	ENSMOCG00000008665	Xrn1	99	95.087	Microtus_ochrogaster
ENSPPYG00000014172	XRN1	100	82.253	ENSMODG00000021236	XRN1	100	82.195	Monodelphis_domestica
ENSPPYG00000014172	XRN1	100	56.916	ENSMALG00000004098	xrn1	100	57.250	Monopterus_albus
ENSPPYG00000014172	XRN1	96	95.261	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSPPYG00000014172	XRN1	100	85.837	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSPPYG00000014172	XRN1	100	85.608	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSPPYG00000014172	XRN1	100	85.780	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSPPYG00000014172	XRN1	100	93.204	ENSMPUG00000012040	XRN1	100	93.204	Mustela_putorius_furo
ENSPPYG00000014172	XRN1	100	88.424	ENSMLUG00000016885	XRN1	100	88.424	Myotis_lucifugus
ENSPPYG00000014172	XRN1	58	91.442	ENSNGAG00000023964	Xrn1	99	91.442	Nannospalax_galili
ENSPPYG00000014172	XRN1	100	98.417	ENSNLEG00000004726	XRN1	100	98.417	Nomascus_leucogenys
ENSPPYG00000014172	XRN1	76	98.969	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSPPYG00000014172	XRN1	79	84.800	ENSOPRG00000007337	-	78	84.800	Ochotona_princeps
ENSPPYG00000014172	XRN1	100	61.473	ENSONIG00000016673	xrn1	99	64.774	Oreochromis_niloticus
ENSPPYG00000014172	XRN1	92	77.637	ENSOANG00000006735	XRN1	100	77.511	Ornithorhynchus_anatinus
ENSPPYG00000014172	XRN1	100	90.315	ENSOCUG00000001861	XRN1	100	90.315	Oryctolagus_cuniculus
ENSPPYG00000014172	XRN1	100	60.730	ENSORLG00000013005	xrn1	100	60.057	Oryzias_latipes
ENSPPYG00000014172	XRN1	100	60.700	ENSORLG00020005559	xrn1	100	60.970	Oryzias_latipes_hni
ENSPPYG00000014172	XRN1	100	60.656	ENSORLG00015022523	xrn1	100	61.627	Oryzias_latipes_hsok
ENSPPYG00000014172	XRN1	92	72.528	ENSOMEG00000015397	xrn1	99	72.779	Oryzias_melastigma
ENSPPYG00000014172	XRN1	100	91.213	ENSOGAG00000000170	XRN1	100	91.330	Otolemur_garnettii
ENSPPYG00000014172	XRN1	99	92.434	ENSOARG00000006343	XRN1	99	92.434	Ovis_aries
ENSPPYG00000014172	XRN1	100	98.360	ENSPPAG00000010180	XRN1	100	98.360	Pan_paniscus
ENSPPYG00000014172	XRN1	100	92.623	ENSPPRG00000007125	XRN1	100	92.623	Panthera_pardus
ENSPPYG00000014172	XRN1	100	92.681	ENSPTIG00000021081	XRN1	100	92.681	Panthera_tigris_altaica
ENSPPYG00000014172	XRN1	100	98.360	ENSPTRG00000015482	XRN1	100	98.360	Pan_troglodytes
ENSPPYG00000014172	XRN1	100	97.832	ENSPANG00000010638	XRN1	100	97.832	Papio_anubis
ENSPPYG00000014172	XRN1	100	76.020	ENSPSIG00000018050	XRN1	100	76.077	Pelodiscus_sinensis
ENSPPYG00000014172	XRN1	57	77.708	ENSPMGG00000002648	xrn1	98	78.022	Periophthalmus_magnuspinnatus
ENSPPYG00000014172	XRN1	58	95.721	ENSPEMG00000020610	Xrn1	99	95.721	Peromyscus_maniculatus_bairdii
ENSPPYG00000014172	XRN1	65	50.886	ENSPMAG00000002975	xrn1	91	78.448	Petromyzon_marinus
ENSPPYG00000014172	XRN1	100	81.643	ENSPCIG00000028735	XRN1	99	89.929	Phascolarctos_cinereus
ENSPPYG00000014172	XRN1	90	64.574	ENSPFOG00000013932	xrn1	99	64.891	Poecilia_formosa
ENSPPYG00000014172	XRN1	90	63.458	ENSPLAG00000021653	xrn1	99	64.231	Poecilia_latipinna
ENSPPYG00000014172	XRN1	88	64.295	ENSPMEG00000003076	xrn1	95	64.744	Poecilia_mexicana
ENSPPYG00000014172	XRN1	100	60.135	ENSPREG00000021147	xrn1	100	60.894	Poecilia_reticulata
ENSPPYG00000014172	XRN1	90	81.724	ENSPCAG00000005638	XRN1	100	81.724	Procavia_capensis
ENSPPYG00000014172	XRN1	100	94.552	ENSPCOG00000013089	XRN1	99	97.087	Propithecus_coquereli
ENSPPYG00000014172	XRN1	96	92.288	ENSPVAG00000016265	XRN1	96	92.288	Pteropus_vampyrus
ENSPPYG00000014172	XRN1	100	60.241	ENSPNYG00000010570	xrn1	99	60.516	Pundamilia_nyererei
ENSPPYG00000014172	XRN1	99	60.710	ENSPNAG00000023531	xrn1	99	60.653	Pygocentrus_nattereri
ENSPPYG00000014172	XRN1	100	86.525	ENSRNOG00000042951	Xrn1	100	86.525	Rattus_norvegicus
ENSPPYG00000014172	XRN1	100	97.071	ENSRBIG00000041227	XRN1	100	97.071	Rhinopithecus_bieti
ENSPPYG00000014172	XRN1	66	54.496	YGL173C	XRN1	81	34.906	Saccharomyces_cerevisiae
ENSPPYG00000014172	XRN1	100	96.307	ENSSBOG00000029561	XRN1	100	96.307	Saimiri_boliviensis_boliviensis
ENSPPYG00000014172	XRN1	99	81.431	ENSSHAG00000016207	XRN1	100	81.313	Sarcophilus_harrisii
ENSPPYG00000014172	XRN1	100	61.019	ENSSFOG00015024211	xrn1	100	61.340	Scleropages_formosus
ENSPPYG00000014172	XRN1	100	60.745	ENSSMAG00000016534	xrn1	100	60.870	Scophthalmus_maximus
ENSPPYG00000014172	XRN1	93	72.417	ENSSDUG00000010306	xrn1	99	72.263	Seriola_dumerili
ENSPPYG00000014172	XRN1	95	70.739	ENSSLDG00000021543	xrn1	99	71.825	Seriola_lalandi_dorsalis
ENSPPYG00000014172	XRN1	67	85.124	ENSSARG00000007741	-	83	85.124	Sorex_araneus
ENSPPYG00000014172	XRN1	100	76.901	ENSTGUG00000008498	XRN1	100	76.959	Taeniopygia_guttata
ENSPPYG00000014172	XRN1	100	58.561	ENSTRUG00000004895	xrn1	96	75.365	Takifugu_rubripes
ENSPPYG00000014172	XRN1	96	68.606	ENSTNIG00000017615	xrn1	100	58.699	Tetraodon_nigroviridis
ENSPPYG00000014172	XRN1	84	97.844	ENSTBEG00000003256	XRN1	89	87.560	Tupaia_belangeri
ENSPPYG00000014172	XRN1	100	88.804	ENSTTRG00000012914	XRN1	100	88.804	Tursiops_truncatus
ENSPPYG00000014172	XRN1	100	92.330	ENSUAMG00000001608	XRN1	99	94.000	Ursus_americanus
ENSPPYG00000014172	XRN1	100	94.262	ENSUMAG00000013625	XRN1	100	94.262	Ursus_maritimus
ENSPPYG00000014172	XRN1	100	90.387	ENSVPAG00000004690	XRN1	100	90.387	Vicugna_pacos
ENSPPYG00000014172	XRN1	100	93.790	ENSVVUG00000024461	XRN1	99	97.147	Vulpes_vulpes
ENSPPYG00000014172	XRN1	100	68.968	ENSXETG00000000619	xrn1	97	88.978	Xenopus_tropicalis
ENSPPYG00000014172	XRN1	100	60.684	ENSXCOG00000007917	xrn1	100	60.616	Xiphophorus_couchianus
ENSPPYG00000014172	XRN1	92	72.046	ENSXMAG00000018320	xrn1	98	72.127	Xiphophorus_maculatus