EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPYG00000017378 (Gene tree)
Gene ID: -
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Pongo_abelii
Status: putative
Strand: Plus strand
Length: 12691 bases
Position: chr7:8348265-8360955
Accession: 2327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPYP00000019472	zf-CCCH	PF00642.24	1e-18	1	2
ENSPPYP00000019472	zf-CCCH	PF00642.24	1e-18	2	2
ENSPPYP00000019472	zf-CCHC	PF00098.23	2.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPYT00000020241	CPSF4-201	1775	-	ENSPPYP00000019472	233 (aa)	-	H2PLJ0

Gene Model

Click here to download ENSPPYG00000017378's gene model file

Pathways

Pathway ID	Pathway Name	Source
pon03015	mRNA surveillance pathway	KEGG
pon05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPYG00000017378's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPYG00000017378	CPSF4	100	99.145	ENSG00000160917	CPSF4	100	99.107	Homo_sapiens
ENSPPYG00000017378	CPSF4	78	74.176	ENSAPOG00000004921	cpsf4	100	74.176	Acanthochromis_polyacanthus
ENSPPYG00000017378	CPSF4	100	98.291	ENSAMEG00000006252	CPSF4	87	98.291	Ailuropoda_melanoleuca
ENSPPYG00000017378	CPSF4	100	77.350	ENSACIG00000009248	cpsf4	85	74.786	Amphilophus_citrinellus
ENSPPYG00000017378	CPSF4	100	83.830	ENSAOCG00000019616	cpsf4	87	83.830	Amphiprion_ocellaris
ENSPPYG00000017378	CPSF4	100	83.830	ENSAPEG00000011679	cpsf4	87	83.830	Amphiprion_percula
ENSPPYG00000017378	CPSF4	100	82.700	ENSATEG00000007010	cpsf4	87	82.700	Anabas_testudineus
ENSPPYG00000017378	CPSF4	100	94.017	ENSACAG00000012941	CPSF4	77	94.017	Anolis_carolinensis
ENSPPYG00000017378	CPSF4	100	99.145	ENSANAG00000021360	CPSF4	87	99.145	Aotus_nancymaae
ENSPPYG00000017378	CPSF4	100	82.979	ENSACLG00000010374	cpsf4	87	82.979	Astatotilapia_calliptera
ENSPPYG00000017378	CPSF4	100	83.898	ENSAMXG00000031647	cpsf4	87	84.746	Astyanax_mexicanus
ENSPPYG00000017378	CPSF4	100	87.179	ENSBTAG00000002090	CPSF4	86	87.179	Bos_taurus
ENSPPYG00000017378	CPSF4	100	99.145	ENSCJAG00000015826	CPSF4	87	99.145	Callithrix_jacchus
ENSPPYG00000017378	CPSF4	100	97.863	ENSCAFG00000015036	CPSF4	87	97.863	Canis_familiaris
ENSPPYG00000017378	CPSF4	93	97.706	ENSCAFG00020014462	CPSF4	83	97.706	Canis_lupus_dingo
ENSPPYG00000017378	CPSF4	100	98.291	ENSCHIG00000014313	CPSF4	87	98.291	Capra_hircus
ENSPPYG00000017378	CPSF4	100	88.034	ENSTSYG00000005712	-	86	88.034	Carlito_syrichta
ENSPPYG00000017378	CPSF4	100	80.426	ENSTSYG00000014604	-	86	77.447	Carlito_syrichta
ENSPPYG00000017378	CPSF4	100	81.702	ENSTSYG00000008195	-	92	78.723	Carlito_syrichta
ENSPPYG00000017378	CPSF4	93	98.165	ENSCAPG00000013881	CPSF4	87	98.165	Cavia_aperea
ENSPPYG00000017378	CPSF4	100	87.607	ENSCPOG00000001783	CPSF4	86	87.607	Cavia_porcellus
ENSPPYG00000017378	CPSF4	100	99.145	ENSCCAG00000028291	CPSF4	87	99.145	Cebus_capucinus
ENSPPYG00000017378	CPSF4	100	99.145	ENSCATG00000038440	CPSF4	87	99.145	Cercocebus_atys
ENSPPYG00000017378	CPSF4	100	98.291	ENSCLAG00000007050	CPSF4	87	98.291	Chinchilla_lanigera
ENSPPYG00000017378	CPSF4	100	99.145	ENSCSAG00000017795	CPSF4	87	99.145	Chlorocebus_sabaeus
ENSPPYG00000017378	CPSF4	92	95.833	ENSCPBG00000020869	CPSF4	100	95.833	Chrysemys_picta_bellii
ENSPPYG00000017378	CPSF4	55	84.615	ENSCPBG00000010269	-	79	83.969	Chrysemys_picta_bellii
ENSPPYG00000017378	CPSF4	96	53.097	ENSCING00000021080	-	84	53.097	Ciona_intestinalis
ENSPPYG00000017378	CPSF4	96	50.806	ENSCSAVG00000011469	-	85	50.202	Ciona_savignyi
ENSPPYG00000017378	CPSF4	100	99.145	ENSCANG00000019384	CPSF4	87	99.145	Colobus_angolensis_palliatus
ENSPPYG00000017378	CPSF4	100	87.607	ENSCGRG00001024184	Cpsf4	86	87.607	Cricetulus_griseus_chok1gshd
ENSPPYG00000017378	CPSF4	100	98.291	ENSCGRG00000013892	Cpsf4	87	98.291	Cricetulus_griseus_crigri
ENSPPYG00000017378	CPSF4	100	82.979	ENSCSEG00000019055	cpsf4	87	82.979	Cynoglossus_semilaevis
ENSPPYG00000017378	CPSF4	100	82.128	ENSCVAG00000016528	cpsf4	87	82.128	Cyprinodon_variegatus
ENSPPYG00000017378	CPSF4	100	83.475	ENSDARG00000020217	cpsf4	87	83.475	Danio_rerio
ENSPPYG00000017378	CPSF4	100	98.718	ENSDNOG00000006344	CPSF4	87	98.718	Dasypus_novemcinctus
ENSPPYG00000017378	CPSF4	93	97.696	ENSDORG00000000742	Cpsf4	100	97.696	Dipodomys_ordii
ENSPPYG00000017378	CPSF4	100	54.864	FBgn0015621	Clp	87	54.864	Drosophila_melanogaster
ENSPPYG00000017378	CPSF4	65	100.000	ENSETEG00000002608	CPSF4	57	100.000	Echinops_telfairi
ENSPPYG00000017378	CPSF4	99	65.086	ENSEBUG00000012552	cpsf4	84	65.086	Eptatretus_burgeri
ENSPPYG00000017378	CPSF4	100	87.607	ENSEASG00005002487	CPSF4	86	87.607	Equus_asinus_asinus
ENSPPYG00000017378	CPSF4	100	98.291	ENSECAG00000007525	CPSF4	87	98.291	Equus_caballus
ENSPPYG00000017378	CPSF4	73	98.507	ENSEEUG00000002158	CPSF4	73	98.507	Erinaceus_europaeus
ENSPPYG00000017378	CPSF4	100	81.172	ENSELUG00000011481	cpsf4	87	81.172	Esox_lucius
ENSPPYG00000017378	CPSF4	100	98.291	ENSFCAG00000015070	CPSF4	87	98.291	Felis_catus
ENSPPYG00000017378	CPSF4	100	85.043	ENSFALG00000013799	CPSF4	86	85.043	Ficedula_albicollis
ENSPPYG00000017378	CPSF4	100	98.291	ENSFDAG00000014092	CPSF4	96	98.291	Fukomys_damarensis
ENSPPYG00000017378	CPSF4	100	81.702	ENSFHEG00000010880	cpsf4	87	81.702	Fundulus_heteroclitus
ENSPPYG00000017378	CPSF4	100	75.424	ENSGMOG00000002330	cpsf4	86	73.729	Gadus_morhua
ENSPPYG00000017378	CPSF4	100	84.615	ENSGALG00000004714	CPSF4	86	83.333	Gallus_gallus
ENSPPYG00000017378	CPSF4	79	38.947	ENSGALG00000004441	-	92	37.895	Gallus_gallus
ENSPPYG00000017378	CPSF4	100	80.851	ENSGAFG00000010580	cpsf4	87	80.851	Gambusia_affinis
ENSPPYG00000017378	CPSF4	100	76.271	ENSGACG00000007792	cpsf4	86	75.424	Gasterosteus_aculeatus
ENSPPYG00000017378	CPSF4	55	84.615	ENSGAGG00000020579	-	73	84.615	Gopherus_agassizii
ENSPPYG00000017378	CPSF4	100	95.726	ENSGAGG00000021835	CPSF4	87	95.726	Gopherus_agassizii
ENSPPYG00000017378	CPSF4	100	99.145	ENSGGOG00000015131	CPSF4	87	99.145	Gorilla_gorilla
ENSPPYG00000017378	CPSF4	100	82.979	ENSHBUG00000013699	cpsf4	87	82.979	Haplochromis_burtoni
ENSPPYG00000017378	CPSF4	100	96.186	ENSHGLG00000017150	CPSF4	87	96.186	Heterocephalus_glaber_female
ENSPPYG00000017378	CPSF4	61	65.957	ENSHGLG00100017302	-	79	48.927	Heterocephalus_glaber_male
ENSPPYG00000017378	CPSF4	100	94.492	ENSHGLG00100009215	-	100	94.492	Heterocephalus_glaber_male
ENSPPYG00000017378	CPSF4	100	79.149	ENSHCOG00000004397	cpsf4	87	79.149	Hippocampus_comes
ENSPPYG00000017378	CPSF4	100	82.627	ENSIPUG00000017147	cpsf4	87	83.966	Ictalurus_punctatus
ENSPPYG00000017378	CPSF4	100	98.291	ENSSTOG00000001688	CPSF4	87	98.291	Ictidomys_tridecemlineatus
ENSPPYG00000017378	CPSF4	100	98.291	ENSJJAG00000019426	Cpsf4	87	98.291	Jaculus_jaculus
ENSPPYG00000017378	CPSF4	100	80.851	ENSKMAG00000015642	cpsf4	87	80.851	Kryptolebias_marmoratus
ENSPPYG00000017378	CPSF4	100	59.149	ENSLACG00000018470	-	86	59.149	Latimeria_chalumnae
ENSPPYG00000017378	CPSF4	100	88.511	ENSLACG00000010938	CPSF4	87	88.511	Latimeria_chalumnae
ENSPPYG00000017378	CPSF4	100	88.034	ENSLOCG00000004814	cpsf4	87	88.034	Lepisosteus_oculatus
ENSPPYG00000017378	CPSF4	100	97.863	ENSLAFG00000000159	CPSF4	87	97.863	Loxodonta_africana
ENSPPYG00000017378	CPSF4	100	99.145	ENSMFAG00000001462	CPSF4	100	87.500	Macaca_fascicularis
ENSPPYG00000017378	CPSF4	100	99.145	ENSMMUG00000019191	CPSF4	87	99.145	Macaca_mulatta
ENSPPYG00000017378	CPSF4	100	99.145	ENSMNEG00000032306	CPSF4	87	99.145	Macaca_nemestrina
ENSPPYG00000017378	CPSF4	100	99.145	ENSMLEG00000034721	CPSF4	87	99.145	Mandrillus_leucophaeus
ENSPPYG00000017378	CPSF4	100	82.553	ENSMAMG00000006244	cpsf4	87	82.553	Mastacembelus_armatus
ENSPPYG00000017378	CPSF4	100	82.979	ENSMZEG00005007515	cpsf4	87	82.979	Maylandia_zebra
ENSPPYG00000017378	CPSF4	100	84.615	ENSMGAG00000004235	CPSF4	99	83.333	Meleagris_gallopavo
ENSPPYG00000017378	CPSF4	100	98.291	ENSMAUG00000021253	Cpsf4	87	98.291	Mesocricetus_auratus
ENSPPYG00000017378	CPSF4	100	98.718	ENSMICG00000017429	CPSF4	87	98.718	Microcebus_murinus
ENSPPYG00000017378	CPSF4	100	98.291	ENSMOCG00000014901	Cpsf4	87	98.291	Microtus_ochrogaster
ENSPPYG00000017378	CPSF4	100	82.979	ENSMMOG00000001813	cpsf4	87	82.979	Mola_mola
ENSPPYG00000017378	CPSF4	100	97.863	ENSMODG00000001367	CPSF4	87	97.863	Monodelphis_domestica
ENSPPYG00000017378	CPSF4	100	80.851	ENSMALG00000012611	cpsf4	87	80.851	Monopterus_albus
ENSPPYG00000017378	CPSF4	100	98.291	MGP_CAROLIEiJ_G0028012	Cpsf4	87	98.291	Mus_caroli
ENSPPYG00000017378	CPSF4	100	98.291	ENSMUSG00000029625	Cpsf4	87	98.291	Mus_musculus
ENSPPYG00000017378	CPSF4	100	98.291	MGP_PahariEiJ_G0024581	Cpsf4	87	98.291	Mus_pahari
ENSPPYG00000017378	CPSF4	100	98.718	MGP_SPRETEiJ_G0029013	Cpsf4	87	98.718	Mus_spretus
ENSPPYG00000017378	CPSF4	100	98.291	ENSMPUG00000016508	CPSF4	87	98.291	Mustela_putorius_furo
ENSPPYG00000017378	CPSF4	100	87.179	ENSMLUG00000010980	CPSF4	99	87.179	Myotis_lucifugus
ENSPPYG00000017378	CPSF4	100	98.291	ENSNGAG00000001567	Cpsf4	87	98.291	Nannospalax_galili
ENSPPYG00000017378	CPSF4	100	82.979	ENSNBRG00000003943	cpsf4	93	82.979	Neolamprologus_brichardi
ENSPPYG00000017378	CPSF4	100	95.726	ENSNLEG00000011074	CPSF4	87	95.726	Nomascus_leucogenys
ENSPPYG00000017378	CPSF4	100	97.863	ENSMEUG00000006955	CPSF4	87	97.863	Notamacropus_eugenii
ENSPPYG00000017378	CPSF4	100	98.291	ENSOPRG00000013663	CPSF4	87	98.291	Ochotona_princeps
ENSPPYG00000017378	CPSF4	94	78.995	ENSODEG00000018283	-	78	75.799	Octodon_degus
ENSPPYG00000017378	CPSF4	100	98.291	ENSODEG00000011181	-	87	98.291	Octodon_degus
ENSPPYG00000017378	CPSF4	100	72.996	ENSODEG00000009779	-	87	72.996	Octodon_degus
ENSPPYG00000017378	CPSF4	100	82.979	ENSONIG00000008495	cpsf4	87	82.979	Oreochromis_niloticus
ENSPPYG00000017378	CPSF4	93	55.507	ENSOANG00000009568	-	83	53.097	Ornithorhynchus_anatinus
ENSPPYG00000017378	CPSF4	100	96.581	ENSOANG00000007729	CPSF4	99	96.581	Ornithorhynchus_anatinus
ENSPPYG00000017378	CPSF4	100	97.863	ENSOCUG00000002437	CPSF4	61	97.863	Oryctolagus_cuniculus
ENSPPYG00000017378	CPSF4	100	81.624	ENSORLG00000022798	cpsf4	87	81.624	Oryzias_latipes
ENSPPYG00000017378	CPSF4	100	81.624	ENSORLG00020008548	cpsf4	87	81.624	Oryzias_latipes_hni
ENSPPYG00000017378	CPSF4	100	81.624	ENSORLG00015019575	cpsf4	87	81.624	Oryzias_latipes_hsok
ENSPPYG00000017378	CPSF4	100	80.342	ENSOMEG00000005176	cpsf4	87	80.342	Oryzias_melastigma
ENSPPYG00000017378	CPSF4	100	98.718	ENSOGAG00000010884	CPSF4	87	98.718	Otolemur_garnettii
ENSPPYG00000017378	CPSF4	100	85.714	ENSOARG00000018668	CPSF4	87	85.294	Ovis_aries
ENSPPYG00000017378	CPSF4	100	99.573	ENSPPAG00000043355	CPSF4	87	99.573	Pan_paniscus
ENSPPYG00000017378	CPSF4	100	98.291	ENSPPRG00000003134	CPSF4	87	98.291	Panthera_pardus
ENSPPYG00000017378	CPSF4	100	98.291	ENSPTIG00000005604	CPSF4	87	98.291	Panthera_tigris_altaica
ENSPPYG00000017378	CPSF4	100	99.573	ENSPTRG00000019453	CPSF4	87	99.573	Pan_troglodytes
ENSPPYG00000017378	CPSF4	100	99.145	ENSPANG00000023123	CPSF4	87	99.145	Papio_anubis
ENSPPYG00000017378	CPSF4	100	83.264	ENSPKIG00000014278	cpsf4	87	83.264	Paramormyrops_kingsleyae
ENSPPYG00000017378	CPSF4	92	95.370	ENSPSIG00000011229	CPSF4	100	95.370	Pelodiscus_sinensis
ENSPPYG00000017378	CPSF4	93	58.447	ENSPSIG00000018198	-	100	57.339	Pelodiscus_sinensis
ENSPPYG00000017378	CPSF4	93	77.064	ENSPMGG00000017735	cpsf4	81	74.312	Periophthalmus_magnuspinnatus
ENSPPYG00000017378	CPSF4	100	98.291	ENSPEMG00000004508	Cpsf4	87	98.291	Peromyscus_maniculatus_bairdii
ENSPPYG00000017378	CPSF4	100	97.863	ENSPCIG00000024776	CPSF4	87	97.863	Phascolarctos_cinereus
ENSPPYG00000017378	CPSF4	100	80.851	ENSPFOG00000014912	cpsf4	87	80.851	Poecilia_formosa
ENSPPYG00000017378	CPSF4	100	72.650	ENSPLAG00000009599	cpsf4	86	72.650	Poecilia_latipinna
ENSPPYG00000017378	CPSF4	100	80.851	ENSPMEG00000009790	cpsf4	87	80.851	Poecilia_mexicana
ENSPPYG00000017378	CPSF4	100	80.000	ENSPREG00000018166	cpsf4	87	77.350	Poecilia_reticulata
ENSPPYG00000017378	CPSF4	100	97.436	ENSPCAG00000001892	CPSF4	87	97.436	Procavia_capensis
ENSPPYG00000017378	CPSF4	100	98.291	ENSPCOG00000012771	CPSF4	87	98.291	Propithecus_coquereli
ENSPPYG00000017378	CPSF4	93	98.157	ENSPVAG00000007531	CPSF4	81	98.157	Pteropus_vampyrus
ENSPPYG00000017378	CPSF4	100	82.979	ENSPNYG00000018559	cpsf4	87	82.979	Pundamilia_nyererei
ENSPPYG00000017378	CPSF4	100	84.322	ENSPNAG00000003736	cpsf4	87	85.169	Pygocentrus_nattereri
ENSPPYG00000017378	CPSF4	100	87.179	ENSRNOG00000000985	Cpsf4	86	87.179	Rattus_norvegicus
ENSPPYG00000017378	CPSF4	100	99.145	ENSRBIG00000033886	CPSF4	100	99.145	Rhinopithecus_bieti
ENSPPYG00000017378	CPSF4	100	88.462	ENSRROG00000040431	CPSF4	86	88.462	Rhinopithecus_roxellana
ENSPPYG00000017378	CPSF4	100	99.145	ENSSBOG00000020493	CPSF4	100	87.500	Saimiri_boliviensis_boliviensis
ENSPPYG00000017378	CPSF4	100	97.863	ENSSHAG00000011533	CPSF4	87	97.863	Sarcophilus_harrisii
ENSPPYG00000017378	CPSF4	100	83.817	ENSSFOG00015007883	cpsf4	87	84.647	Scleropages_formosus
ENSPPYG00000017378	CPSF4	100	77.778	ENSSMAG00000006374	cpsf4	86	75.641	Scophthalmus_maximus
ENSPPYG00000017378	CPSF4	100	82.128	ENSSDUG00000018887	cpsf4	87	82.128	Seriola_dumerili
ENSPPYG00000017378	CPSF4	100	82.128	ENSSLDG00000019078	cpsf4	87	82.553	Seriola_lalandi_dorsalis
ENSPPYG00000017378	CPSF4	100	98.718	ENSSARG00000012416	CPSF4	100	98.718	Sorex_araneus
ENSPPYG00000017378	CPSF4	100	94.444	ENSSPUG00000003549	CPSF4	87	94.444	Sphenodon_punctatus
ENSPPYG00000017378	CPSF4	95	58.222	ENSSPUG00000014803	-	81	58.296	Sphenodon_punctatus
ENSPPYG00000017378	CPSF4	100	77.350	ENSSPAG00000006174	cpsf4	85	74.786	Stegastes_partitus
ENSPPYG00000017378	CPSF4	100	88.034	ENSSSCG00000026896	CPSF4	86	88.034	Sus_scrofa
ENSPPYG00000017378	CPSF4	100	83.898	ENSTGUG00000007552	CPSF4	86	82.203	Taeniopygia_guttata
ENSPPYG00000017378	CPSF4	100	79.574	ENSTRUG00000024220	cpsf4	87	80.000	Takifugu_rubripes
ENSPPYG00000017378	CPSF4	100	78.298	ENSTNIG00000006265	cpsf4	87	80.000	Tetraodon_nigroviridis
ENSPPYG00000017378	CPSF4	100	90.129	ENSTBEG00000011406	CPSF4	100	90.129	Tupaia_belangeri
ENSPPYG00000017378	CPSF4	100	75.214	ENSTTRG00000003007	CPSF4	87	75.214	Tursiops_truncatus
ENSPPYG00000017378	CPSF4	91	85.849	ENSUAMG00000008051	CPSF4	72	85.849	Ursus_americanus
ENSPPYG00000017378	CPSF4	100	87.179	ENSUMAG00000009474	CPSF4	86	87.179	Ursus_maritimus
ENSPPYG00000017378	CPSF4	100	87.179	ENSVVUG00000008824	CPSF4	86	87.179	Vulpes_vulpes
ENSPPYG00000017378	CPSF4	100	87.705	ENSXETG00000009892	cpsf4	87	87.705	Xenopus_tropicalis
ENSPPYG00000017378	CPSF4	99	60.515	ENSXETG00000004641	cpsf4l	86	60.515	Xenopus_tropicalis
ENSPPYG00000017378	CPSF4	100	80.426	ENSXCOG00000016040	cpsf4	87	80.426	Xiphophorus_couchianus
ENSPPYG00000017378	CPSF4	100	80.851	ENSXMAG00000024670	cpsf4	87	80.851	Xiphophorus_maculatus