EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPPYG00000017661 (Gene tree)
Gene ID
100173625
Gene Symbol
LSM5
Alias
-
Full Name
Pongo abelii LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated (LSM5)%2C mRNA.
Gene Type
protein_coding
Species
Pongo_abelii
Status
putative
Strand
Plus strand
Length
5052 bases
Position
chr7:51737132-51742183
Accession
NM_001133156
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPPYP00000019797LSMPF01423.223.1e-1911
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPPYT00000020578-2219-ENSPPYP0000001979791 (aa)-H2PMG0
Gene Model
Click here to download ENSPPYG00000017661's gene model file
Pathways
Pathway IDPathway NameSource
pon03018RNA degradationKEGG
pon03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPPYG00000017661's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPPYG00000017661LSM57631.507ENSPPYG00000000326-7731.507
ENSPPYG00000017661LSM58233.333ENSPPYG00000013402LSM37433.333
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPPYG00000017661LSM510096.703ENSG00000106355LSM510096.703Homo_sapiens
ENSPPYG00000017661LSM59091.463ENSAPOG00000011743LSM510091.935Acanthochromis_polyacanthus
ENSPPYG00000017661LSM510092.308ENSAPOG00000020779LSM510092.308Acanthochromis_polyacanthus
ENSPPYG00000017661LSM510096.703ENSAMEG00000006700LSM510096.703Ailuropoda_melanoleuca
ENSPPYG00000017661LSM59656.322ENSACIG00000019185lsm59856.322Amphilophus_citrinellus
ENSPPYG00000017661LSM510092.308ENSAOCG00000001636lsm510092.308Amphiprion_ocellaris
ENSPPYG00000017661LSM56891.935ENSAPEG00000008201lsm510091.935Amphiprion_percula
ENSPPYG00000017661LSM510092.308ENSAPEG00000008151lsm510092.308Amphiprion_percula
ENSPPYG00000017661LSM59090.244ENSATEG00000020470lsm510057.143Anabas_testudineus
ENSPPYG00000017661LSM58195.946ENSAPLG00000008171LSM510095.946Anas_platyrhynchos
ENSPPYG00000017661LSM56294.643ENSACAG00000009530LSM59394.643Anolis_carolinensis
ENSPPYG00000017661LSM59992.222ENSANAG00000024192-9492.222Aotus_nancymaae
ENSPPYG00000017661LSM510095.604ENSANAG00000034409-10095.604Aotus_nancymaae
ENSPPYG00000017661LSM510075.824ENSANAG00000037758-10075.824Aotus_nancymaae
ENSPPYG00000017661LSM59691.954ENSACLG00000012891lsm59991.954Astatotilapia_calliptera
ENSPPYG00000017661LSM510078.723ENSAMXG00000035543lsm510078.723Astyanax_mexicanus
ENSPPYG00000017661LSM510096.703ENSBTAG00000002332LSM510096.703Bos_taurus
ENSPPYG00000017661LSM55381.250ENSBTAG00000052014-6381.250Bos_taurus
ENSPPYG00000017661LSM510070.330WBGene00003079lsm-510070.330Caenorhabditis_elegans
ENSPPYG00000017661LSM510096.703ENSCJAG00000047379LSM58198.077Callithrix_jacchus
ENSPPYG00000017661LSM59983.333ENSCJAG00000005678-10083.333Callithrix_jacchus
ENSPPYG00000017661LSM55796.154ENSCAFG00000030781-6096.154Canis_familiaris
ENSPPYG00000017661LSM510095.604ENSCAFG00000019261-10095.604Canis_familiaris
ENSPPYG00000017661LSM510096.703ENSCAFG00020004946LSM510096.703Canis_lupus_dingo
ENSPPYG00000017661LSM510095.604ENSCHIG00000004079-10095.604Capra_hircus
ENSPPYG00000017661LSM58172.973ENSCHIG00000021428-9570.455Capra_hircus
ENSPPYG00000017661LSM510096.703ENSCHIG00000024539LSM510096.703Capra_hircus
ENSPPYG00000017661LSM510078.022ENSTSYG00000026530-9178.022Carlito_syrichta
ENSPPYG00000017661LSM510083.516ENSTSYG00000028728-10083.516Carlito_syrichta
ENSPPYG00000017661LSM510096.703ENSTSYG00000006449-10096.703Carlito_syrichta
ENSPPYG00000017661LSM510071.429ENSTSYG00000036637-10071.429Carlito_syrichta
ENSPPYG00000017661LSM58288.000ENSCAPG00000006980LSM510088.000Cavia_aperea
ENSPPYG00000017661LSM510096.703ENSCPOG00000036386LSM510096.703Cavia_porcellus
ENSPPYG00000017661LSM510078.022ENSCCAG00000032792-10078.022Cebus_capucinus
ENSPPYG00000017661LSM510095.604ENSCCAG00000032123-10095.604Cebus_capucinus
ENSPPYG00000017661LSM510065.934ENSCCAG00000037334-10065.934Cebus_capucinus
ENSPPYG00000017661LSM510095.604ENSCCAG00000000821-10095.604Cebus_capucinus
ENSPPYG00000017661LSM510096.703ENSCCAG00000037808-10096.703Cebus_capucinus
ENSPPYG00000017661LSM59985.556ENSCATG00000014790-9592.727Cercocebus_atys
ENSPPYG00000017661LSM510096.703ENSCATG00000040218LSM510096.703Cercocebus_atys
ENSPPYG00000017661LSM510081.319ENSCLAG00000005062-9081.319Chinchilla_lanigera
ENSPPYG00000017661LSM510096.703ENSCLAG00000000202LSM510096.703Chinchilla_lanigera
ENSPPYG00000017661LSM58296.000ENSCHOG00000005335LSM59996.000Choloepus_hoffmanni
ENSPPYG00000017661LSM510096.703ENSCPBG00000013685LSM510096.703Chrysemys_picta_bellii
ENSPPYG00000017661LSM59885.393ENSCING00000020625-9985.393Ciona_intestinalis
ENSPPYG00000017661LSM59584.884ENSCSAVG00000001439-9884.884Ciona_savignyi
ENSPPYG00000017661LSM510096.703ENSCANG00000039909LSM510096.703Colobus_angolensis_palliatus
ENSPPYG00000017661LSM510096.703ENSCGRG00001015461Lsm510096.703Cricetulus_griseus_chok1gshd
ENSPPYG00000017661LSM58296.000ENSCGRG00000007677Lsm510096.000Cricetulus_griseus_crigri
ENSPPYG00000017661LSM510057.143ENSCSEG00000015286lsm510057.143Cynoglossus_semilaevis
ENSPPYG00000017661LSM510091.209ENSCVAG00000004262lsm510091.209Cyprinodon_variegatus
ENSPPYG00000017661LSM510091.209ENSDARG00000071573lsm510091.935Danio_rerio
ENSPPYG00000017661LSM59686.207ENSDNOG00000049495-9686.207Dasypus_novemcinctus
ENSPPYG00000017661LSM510096.703ENSDNOG00000034958LSM510096.703Dasypus_novemcinctus
ENSPPYG00000017661LSM510096.703ENSDORG00000009422Lsm510096.703Dipodomys_ordii
ENSPPYG00000017661LSM59879.775FBgn0035675CG66109879.775Drosophila_melanogaster
ENSPPYG00000017661LSM58181.081ENSETEG00000016074-9881.081Echinops_telfairi
ENSPPYG00000017661LSM59864.045ENSETEG00000000777-9964.045Echinops_telfairi
ENSPPYG00000017661LSM510079.121ENSETEG00000010651-10079.121Echinops_telfairi
ENSPPYG00000017661LSM510096.703ENSETEG00000018068LSM510096.703Echinops_telfairi
ENSPPYG00000017661LSM59975.556ENSETEG00000001469-9975.556Echinops_telfairi
ENSPPYG00000017661LSM510087.912ENSEBUG00000008540lsm510087.912Eptatretus_burgeri
ENSPPYG00000017661LSM510096.703ENSEASG00005003500LSM510096.703Equus_asinus_asinus
ENSPPYG00000017661LSM510089.011ENSECAG00000018445LSM510089.011Equus_caballus
ENSPPYG00000017661LSM56389.474ENSEEUG00000004102LSM59589.474Erinaceus_europaeus
ENSPPYG00000017661LSM510091.209ENSELUG00000007792lsm510091.209Esox_lucius
ENSPPYG00000017661LSM510096.703ENSFCAG00000000230LSM510096.703Felis_catus
ENSPPYG00000017661LSM58496.053ENSFALG00000001892LSM59296.053Ficedula_albicollis
ENSPPYG00000017661LSM510065.934ENSFDAG00000008685-10065.934Fukomys_damarensis
ENSPPYG00000017661LSM510096.703ENSFDAG00000008767LSM510096.703Fukomys_damarensis
ENSPPYG00000017661LSM59978.889ENSFHEG00000004011lsm59678.889Fundulus_heteroclitus
ENSPPYG00000017661LSM59991.111ENSGMOG00000018235lsm510091.111Gadus_morhua
ENSPPYG00000017661LSM510095.604ENSGALG00000041625LSM510095.604Gallus_gallus
ENSPPYG00000017661LSM56891.935ENSGAFG00000016824lsm510091.935Gambusia_affinis
ENSPPYG00000017661LSM510092.308ENSGACG00000005528lsm510092.308Gasterosteus_aculeatus
ENSPPYG00000017661LSM510096.703ENSGAGG00000015593LSM510096.703Gopherus_agassizii
ENSPPYG00000017661LSM510096.703ENSGGOG00000043469LSM510096.703Gorilla_gorilla
ENSPPYG00000017661LSM59691.954ENSHBUG00000013773lsm59991.954Haplochromis_burtoni
ENSPPYG00000017661LSM510096.703ENSHGLG00000011765LSM510096.703Heterocephalus_glaber_female
ENSPPYG00000017661LSM510093.407ENSHGLG00100015610LSM510093.407Heterocephalus_glaber_male
ENSPPYG00000017661LSM510057.143ENSHCOG00000008288lsm510057.143Hippocampus_comes
ENSPPYG00000017661LSM510090.110ENSIPUG00000021095LSM510090.110Ictalurus_punctatus
ENSPPYG00000017661LSM59280.233ENSSTOG00000033886-9780.233Ictidomys_tridecemlineatus
ENSPPYG00000017661LSM510096.703ENSSTOG00000012662LSM510096.703Ictidomys_tridecemlineatus
ENSPPYG00000017661LSM510094.505ENSJJAG00000012145-10094.505Jaculus_jaculus
ENSPPYG00000017661LSM58787.342ENSJJAG00000004475-10087.342Jaculus_jaculus
ENSPPYG00000017661LSM510067.033ENSJJAG00000016144-9267.033Jaculus_jaculus
ENSPPYG00000017661LSM510091.209ENSKMAG00000021861lsm510091.209Kryptolebias_marmoratus
ENSPPYG00000017661LSM56283.929ENSLBEG00000017379lsm59283.929Labrus_bergylta
ENSPPYG00000017661LSM510083.516ENSLBEG00000009235LSM57083.516Labrus_bergylta
ENSPPYG00000017661LSM510092.308ENSLACG00000022448LSM510092.308Latimeria_chalumnae
ENSPPYG00000017661LSM510091.209ENSLOCG00000012903lsm510091.209Lepisosteus_oculatus
ENSPPYG00000017661LSM510069.231ENSLAFG00000027938-10069.231Loxodonta_africana
ENSPPYG00000017661LSM510096.703ENSLAFG00000029579LSM510096.703Loxodonta_africana
ENSPPYG00000017661LSM510094.505ENSMFAG00000030152-10094.505Macaca_fascicularis
ENSPPYG00000017661LSM55395.833ENSMFAG00000031187-8195.833Macaca_fascicularis
ENSPPYG00000017661LSM510096.703ENSMFAG00000038508LSM510096.703Macaca_fascicularis
ENSPPYG00000017661LSM510094.505ENSMMUG00000030131-10094.505Macaca_mulatta
ENSPPYG00000017661LSM55798.077ENSMMUG00000045129-8198.077Macaca_mulatta
ENSPPYG00000017661LSM59986.667ENSMMUG00000039822-10086.667Macaca_mulatta
ENSPPYG00000017661LSM510094.505ENSMNEG00000037935-10094.505Macaca_nemestrina
ENSPPYG00000017661LSM510096.703ENSMNEG00000015331LSM510096.703Macaca_nemestrina
ENSPPYG00000017661LSM59885.393ENSMLEG00000034037-10085.393Mandrillus_leucophaeus
ENSPPYG00000017661LSM510096.703ENSMLEG00000024945LSM510096.703Mandrillus_leucophaeus
ENSPPYG00000017661LSM510089.011ENSMAMG00000012869lsm510089.011Mastacembelus_armatus
ENSPPYG00000017661LSM59691.954ENSMZEG00005019554lsm59991.954Maylandia_zebra
ENSPPYG00000017661LSM510095.604ENSMGAG00000012117LSM510095.604Meleagris_gallopavo
ENSPPYG00000017661LSM510095.604ENSMAUG00000008132-10095.604Mesocricetus_auratus
ENSPPYG00000017661LSM510096.703ENSMAUG00000012222Lsm510096.703Mesocricetus_auratus
ENSPPYG00000017661LSM59974.444ENSMICG00000033928-9674.444Microcebus_murinus
ENSPPYG00000017661LSM510096.703ENSMICG00000005353LSM510096.703Microcebus_murinus
ENSPPYG00000017661LSM510096.703ENSMOCG00000012018Lsm510096.703Microtus_ochrogaster
ENSPPYG00000017661LSM58493.421ENSMMOG00000004026lsm58793.421Mola_mola
ENSPPYG00000017661LSM56895.161ENSMODG00000013274-10095.161Monodelphis_domestica
ENSPPYG00000017661LSM56888.710ENSMALG00000010343lsm510088.710Monopterus_albus
ENSPPYG00000017661LSM510096.703MGP_CAROLIEiJ_G0028421Lsm5100100.000Mus_caroli
ENSPPYG00000017661LSM510096.703ENSMUSG00000091625Lsm5100100.000Mus_musculus
ENSPPYG00000017661LSM510096.703MGP_PahariEiJ_G0022171Lsm5100100.000Mus_pahari
ENSPPYG00000017661LSM510096.703MGP_SPRETEiJ_G0029423Lsm5100100.000Mus_spretus
ENSPPYG00000017661LSM510096.703ENSMLUG00000017028LSM510096.703Myotis_lucifugus
ENSPPYG00000017661LSM510083.871ENSNGAG00000017707-10083.871Nannospalax_galili
ENSPPYG00000017661LSM510096.703ENSNGAG00000024142Lsm510096.703Nannospalax_galili
ENSPPYG00000017661LSM59975.556ENSNGAG00000022569-9675.556Nannospalax_galili
ENSPPYG00000017661LSM56391.228ENSNBRG00000011386lsm57691.228Neolamprologus_brichardi
ENSPPYG00000017661LSM55189.130ENSNBRG00000009964LSM59889.130Neolamprologus_brichardi
ENSPPYG00000017661LSM510096.703ENSNLEG00000015268LSM510096.703Nomascus_leucogenys
ENSPPYG00000017661LSM58296.000ENSOPRG00000002443LSM510096.000Ochotona_princeps
ENSPPYG00000017661LSM510096.703ENSODEG00000008258-10096.703Octodon_degus
ENSPPYG00000017661LSM510096.703ENSODEG00000019072-10096.703Octodon_degus
ENSPPYG00000017661LSM58258.667ENSOANG00000014540-10058.667Ornithorhynchus_anatinus
ENSPPYG00000017661LSM510096.703ENSOCUG00000029043LSM510096.703Oryctolagus_cuniculus
ENSPPYG00000017661LSM510090.110ENSORLG00000027725lsm55890.110Oryzias_latipes
ENSPPYG00000017661LSM59687.356ENSORLG00020003019lsm58687.356Oryzias_latipes_hni
ENSPPYG00000017661LSM510090.110ENSORLG00015003338lsm510090.110Oryzias_latipes_hsok
ENSPPYG00000017661LSM510089.011ENSOMEG00000001078lsm510089.011Oryzias_melastigma
ENSPPYG00000017661LSM510096.703ENSOGAG00000013892LSM510096.703Otolemur_garnettii
ENSPPYG00000017661LSM510096.703ENSOARG00000006944LSM510096.703Ovis_aries
ENSPPYG00000017661LSM510096.703ENSPPAG00000003697-10096.703Pan_paniscus
ENSPPYG00000017661LSM510096.703ENSPPRG00000002550LSM510096.703Panthera_pardus
ENSPPYG00000017661LSM510096.703ENSPTIG00000015604LSM510096.703Panthera_tigris_altaica
ENSPPYG00000017661LSM510086.813ENSPTRG00000049488-10089.011Pan_troglodytes
ENSPPYG00000017661LSM510096.703ENSPTRG00000019057LSM510096.703Pan_troglodytes
ENSPPYG00000017661LSM59986.667ENSPANG00000032538-10086.667Papio_anubis
ENSPPYG00000017661LSM510096.703ENSPANG00000032179-10096.703Papio_anubis
ENSPPYG00000017661LSM510093.407ENSPANG00000033477-10093.407Papio_anubis
ENSPPYG00000017661LSM510091.209ENSPKIG00000011910lsm510091.209Paramormyrops_kingsleyae
ENSPPYG00000017661LSM58195.946ENSPSIG00000014796LSM510095.946Pelodiscus_sinensis
ENSPPYG00000017661LSM56891.935ENSPMGG00000011699lsm510091.935Periophthalmus_magnuspinnatus
ENSPPYG00000017661LSM510071.429ENSPEMG00000022375-10071.429Peromyscus_maniculatus_bairdii
ENSPPYG00000017661LSM552100.000ENSPEMG00000019994-80100.000Peromyscus_maniculatus_bairdii
ENSPPYG00000017661LSM510091.209ENSPFOG00000001433lsm510091.209Poecilia_formosa
ENSPPYG00000017661LSM510091.209ENSPLAG00000009665lsm510091.209Poecilia_latipinna
ENSPPYG00000017661LSM510091.209ENSPMEG00000022265lsm510091.209Poecilia_mexicana
ENSPPYG00000017661LSM56891.935ENSPREG00000022452lsm510091.935Poecilia_reticulata
ENSPPYG00000017661LSM58996.296ENSPCAG00000013740LSM510096.296Procavia_capensis
ENSPPYG00000017661LSM510096.703ENSPVAG00000009786LSM510096.703Pteropus_vampyrus
ENSPPYG00000017661LSM59691.954ENSPNYG00000022236lsm59991.954Pundamilia_nyererei
ENSPPYG00000017661LSM510090.110ENSPNAG00000001887lsm510090.110Pygocentrus_nattereri
ENSPPYG00000017661LSM510092.391ENSRNOG00000027305AABR07065089.110092.391Rattus_norvegicus
ENSPPYG00000017661LSM510096.703ENSRNOG00000042126Lsm510096.703Rattus_norvegicus
ENSPPYG00000017661LSM510096.703ENSRBIG00000030340-10096.703Rhinopithecus_bieti
ENSPPYG00000017661LSM510096.703ENSRBIG00000027803-10096.703Rhinopithecus_bieti
ENSPPYG00000017661LSM510096.703ENSRBIG00000030714-10096.703Rhinopithecus_bieti
ENSPPYG00000017661LSM510095.604ENSRBIG00000024431-10095.604Rhinopithecus_bieti
ENSPPYG00000017661LSM510096.703ENSRROG00000004655-10096.703Rhinopithecus_roxellana
ENSPPYG00000017661LSM510096.703ENSRROG00000042782-10096.703Rhinopithecus_roxellana
ENSPPYG00000017661LSM510096.703ENSRROG00000023884-10096.703Rhinopithecus_roxellana
ENSPPYG00000017661LSM58550.000YER146W-8850.000Saccharomyces_cerevisiae
ENSPPYG00000017661LSM510096.703ENSSBOG00000012312LSM510096.703Saimiri_boliviensis_boliviensis
ENSPPYG00000017661LSM510094.505ENSSBOG00000019124-10094.505Saimiri_boliviensis_boliviensis
ENSPPYG00000017661LSM510074.725ENSSBOG00000034794-10074.725Saimiri_boliviensis_boliviensis
ENSPPYG00000017661LSM510091.209ENSSFOG00015010099lsm510091.209Scleropages_formosus
ENSPPYG00000017661LSM510058.242ENSSMAG00000007895lsm510058.242Scophthalmus_maximus
ENSPPYG00000017661LSM56891.935ENSSDUG00000010762lsm510091.935Seriola_dumerili
ENSPPYG00000017661LSM510091.209ENSSLDG00000025242lsm510091.209Seriola_lalandi_dorsalis
ENSPPYG00000017661LSM58675.641ENSSLDG00000008014-9375.641Seriola_lalandi_dorsalis
ENSPPYG00000017661LSM510068.132ENSSARG00000003330LSM510068.132Sorex_araneus
ENSPPYG00000017661LSM510094.505ENSSPUG00000002690LSM510094.505Sphenodon_punctatus
ENSPPYG00000017661LSM510058.242ENSSPAG00000005435lsm510058.242Stegastes_partitus
ENSPPYG00000017661LSM57684.058ENSSSCG00000029661-9684.058Sus_scrofa
ENSPPYG00000017661LSM510096.703ENSSSCG00000026064-10096.703Sus_scrofa
ENSPPYG00000017661LSM510093.407ENSTGUG00000017539LSM510093.407Taeniopygia_guttata
ENSPPYG00000017661LSM58684.337ENSTRUG00000017749lsm56484.337Takifugu_rubripes
ENSPPYG00000017661LSM59691.954ENSTNIG00000008695lsm59991.954Tetraodon_nigroviridis
ENSPPYG00000017661LSM510096.703ENSTBEG00000004876LSM510096.703Tupaia_belangeri
ENSPPYG00000017661LSM510096.703ENSTTRG00000004237LSM510096.703Tursiops_truncatus
ENSPPYG00000017661LSM55798.077ENSUAMG00000009786LSM56898.077Ursus_americanus
ENSPPYG00000017661LSM510095.604ENSUMAG00000002625LSM56595.604Ursus_maritimus
ENSPPYG00000017661LSM510096.703ENSVPAG00000009985LSM510096.703Vicugna_pacos
ENSPPYG00000017661LSM510096.703ENSVVUG00000021311LSM510096.703Vulpes_vulpes
ENSPPYG00000017661LSM59091.463ENSXETG00000026465lsm510091.463Xenopus_tropicalis
ENSPPYG00000017661LSM56891.935ENSXCOG00000015348lsm510091.935Xiphophorus_couchianus
ENSPPYG00000017661LSM510091.209ENSXMAG00000029988lsm510091.209Xiphophorus_maculatus

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