EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPYG00000017972 (Gene tree)
Gene ID: 100189909
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Pongo_abelii
Status: putative
Strand: Plus strand
Length: 435766 bases
Position: chr7:124710809-125146574
Accession: 30646
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPYP00000020159	TUDOR	PF00567.24	8.3e-28	1	1
ENSPPYP00000020159	SNase	PF00565.17	4.2e-66	1	4
ENSPPYP00000020159	SNase	PF00565.17	4.2e-66	2	4
ENSPPYP00000020159	SNase	PF00565.17	4.2e-66	3	4
ENSPPYP00000020159	SNase	PF00565.17	4.2e-66	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPYT00000020952	SND1-201	2665	-	ENSPPYP00000020159	842 (aa)	-	H2PNE7

Gene Model

Click here to download ENSPPYG00000017972's gene model file

Pathways

Pathway ID	Pathway Name	Source
pon05203	Viral carcinogenesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPYG00000017972's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPYG00000017972	SND1	100	99.504	ENSG00000197157	SND1	93	99.504	Homo_sapiens
ENSPPYG00000017972	SND1	100	91.667	ENSAPOG00000017599	snd1	91	91.667	Acanthochromis_polyacanthus
ENSPPYG00000017972	SND1	100	98.762	ENSAMEG00000004664	SND1	88	98.762	Ailuropoda_melanoleuca
ENSPPYG00000017972	SND1	98	91.667	ENSACIG00000003551	snd1	91	91.667	Amphilophus_citrinellus
ENSPPYG00000017972	SND1	100	91.667	ENSAOCG00000014166	snd1	91	91.667	Amphiprion_ocellaris
ENSPPYG00000017972	SND1	100	91.667	ENSAPEG00000007067	snd1	91	91.667	Amphiprion_percula
ENSPPYG00000017972	SND1	96	84.035	ENSATEG00000018475	snd1	79	85.443	Anabas_testudineus
ENSPPYG00000017972	SND1	100	99.132	ENSANAG00000034463	SND1	93	99.132	Aotus_nancymaae
ENSPPYG00000017972	SND1	99	91.667	ENSACLG00000022897	snd1	91	91.667	Astatotilapia_calliptera
ENSPPYG00000017972	SND1	99	88.889	ENSAMXG00000016318	snd1	91	88.889	Astyanax_mexicanus
ENSPPYG00000017972	SND1	100	98.635	ENSBTAG00000010692	SND1	93	98.635	Bos_taurus
ENSPPYG00000017972	SND1	94	49.015	WBGene00006626	tsn-1	87	49.507	Caenorhabditis_elegans
ENSPPYG00000017972	SND1	100	98.883	ENSCJAG00000017668	SND1	93	98.883	Callithrix_jacchus
ENSPPYG00000017972	SND1	100	99.256	ENSCAFG00000001700	SND1	93	99.256	Canis_familiaris
ENSPPYG00000017972	SND1	100	99.256	ENSCAFG00020021639	SND1	93	99.256	Canis_lupus_dingo
ENSPPYG00000017972	SND1	100	99.007	ENSCHIG00000023390	SND1	93	99.007	Capra_hircus
ENSPPYG00000017972	SND1	79	99.296	ENSTSYG00000004979	SND1	96	99.296	Carlito_syrichta
ENSPPYG00000017972	SND1	99	90.244	ENSCAPG00000010677	SND1	91	90.244	Cavia_aperea
ENSPPYG00000017972	SND1	100	98.015	ENSCPOG00000006251	SND1	93	98.015	Cavia_porcellus
ENSPPYG00000017972	SND1	100	99.256	ENSCCAG00000036847	SND1	93	99.256	Cebus_capucinus
ENSPPYG00000017972	SND1	100	99.628	ENSCATG00000035214	SND1	93	99.628	Cercocebus_atys
ENSPPYG00000017972	SND1	100	98.015	ENSCLAG00000011796	SND1	98	98.990	Chinchilla_lanigera
ENSPPYG00000017972	SND1	100	99.628	ENSCSAG00000010182	SND1	93	99.628	Chlorocebus_sabaeus
ENSPPYG00000017972	SND1	84	89.216	ENSCHOG00000002218	SND1	86	89.216	Choloepus_hoffmanni
ENSPPYG00000017972	SND1	100	92.050	ENSCPBG00000018094	SND1	91	93.147	Chrysemys_picta_bellii
ENSPPYG00000017972	SND1	98	58.949	ENSCING00000000524	-	90	58.949	Ciona_intestinalis
ENSPPYG00000017972	SND1	99	60.000	ENSCSAVG00000008807	-	87	60.175	Ciona_savignyi
ENSPPYG00000017972	SND1	100	99.628	ENSCANG00000035119	SND1	93	99.628	Colobus_angolensis_palliatus
ENSPPYG00000017972	SND1	98	97.226	ENSCGRG00001022514	Snd1	98	98.148	Cricetulus_griseus_chok1gshd
ENSPPYG00000017972	SND1	97	97.179	ENSCGRG00000012277	Snd1	93	97.179	Cricetulus_griseus_crigri
ENSPPYG00000017972	SND1	98	88.889	ENSCSEG00000008661	snd1	91	88.889	Cynoglossus_semilaevis
ENSPPYG00000017972	SND1	100	88.889	ENSCVAG00000010316	snd1	91	88.889	Cyprinodon_variegatus
ENSPPYG00000017972	SND1	100	88.889	ENSDARG00000006766	snd1	97	87.770	Danio_rerio
ENSPPYG00000017972	SND1	97	95.530	ENSDNOG00000006795	SND1	93	95.530	Dasypus_novemcinctus
ENSPPYG00000017972	SND1	100	98.635	ENSDORG00000000336	Snd1	93	98.635	Dipodomys_ordii
ENSPPYG00000017972	SND1	94	52.184	FBgn0035121	Tudor-SN	87	52.311	Drosophila_melanogaster
ENSPPYG00000017972	SND1	97	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSPPYG00000017972	SND1	65	67.568	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSPPYG00000017972	SND1	100	99.132	ENSEASG00005008513	SND1	93	99.132	Equus_asinus_asinus
ENSPPYG00000017972	SND1	100	99.007	ENSECAG00000011451	SND1	93	99.007	Equus_caballus
ENSPPYG00000017972	SND1	96	88.462	ENSEEUG00000014737	SND1	89	88.462	Erinaceus_europaeus
ENSPPYG00000017972	SND1	99	85.294	ENSELUG00000001805	snd1	88	85.294	Esox_lucius
ENSPPYG00000017972	SND1	100	99.007	ENSFCAG00000008289	SND1	93	99.007	Felis_catus
ENSPPYG00000017972	SND1	100	98.263	ENSFDAG00000015881	SND1	93	98.263	Fukomys_damarensis
ENSPPYG00000017972	SND1	99	88.889	ENSFHEG00000004093	snd1	91	88.889	Fundulus_heteroclitus
ENSPPYG00000017972	SND1	69	83.333	ENSGMOG00000018932	snd1	56	83.333	Gadus_morhua
ENSPPYG00000017972	SND1	100	88.889	ENSGAFG00000008421	snd1	92	88.889	Gambusia_affinis
ENSPPYG00000017972	SND1	100	88.889	ENSGACG00000019793	snd1	91	88.889	Gasterosteus_aculeatus
ENSPPYG00000017972	SND1	100	98.775	ENSGGOG00000009614	SND1	94	98.775	Gorilla_gorilla
ENSPPYG00000017972	SND1	99	91.667	ENSHBUG00000019135	snd1	91	91.667	Haplochromis_burtoni
ENSPPYG00000017972	SND1	100	97.891	ENSHGLG00000003618	SND1	98	98.653	Heterocephalus_glaber_female
ENSPPYG00000017972	SND1	99	97.378	ENSHGLG00100012449	SND1	93	97.378	Heterocephalus_glaber_male
ENSPPYG00000017972	SND1	100	86.111	ENSHCOG00000005266	snd1	91	86.111	Hippocampus_comes
ENSPPYG00000017972	SND1	100	88.889	ENSIPUG00000013279	snd1	91	88.889	Ictalurus_punctatus
ENSPPYG00000017972	SND1	100	98.635	ENSSTOG00000002140	SND1	93	98.635	Ictidomys_tridecemlineatus
ENSPPYG00000017972	SND1	100	98.635	ENSJJAG00000009561	Snd1	93	98.635	Jaculus_jaculus
ENSPPYG00000017972	SND1	100	91.667	ENSKMAG00000016997	snd1	91	91.667	Kryptolebias_marmoratus
ENSPPYG00000017972	SND1	100	88.889	ENSLBEG00000013563	snd1	91	88.889	Labrus_bergylta
ENSPPYG00000017972	SND1	98	94.444	ENSLOCG00000015537	snd1	91	94.444	Lepisosteus_oculatus
ENSPPYG00000017972	SND1	100	98.139	ENSLAFG00000009696	SND1	93	98.139	Loxodonta_africana
ENSPPYG00000017972	SND1	100	99.628	ENSMFAG00000038114	SND1	93	99.628	Macaca_fascicularis
ENSPPYG00000017972	SND1	100	99.628	ENSMMUG00000015432	SND1	97	99.831	Macaca_mulatta
ENSPPYG00000017972	SND1	100	99.628	ENSMNEG00000039808	SND1	97	99.823	Macaca_nemestrina
ENSPPYG00000017972	SND1	100	99.752	ENSMLEG00000029040	SND1	97	99.823	Mandrillus_leucophaeus
ENSPPYG00000017972	SND1	99	91.667	ENSMAMG00000011739	snd1	91	91.667	Mastacembelus_armatus
ENSPPYG00000017972	SND1	99	91.667	ENSMZEG00005005681	snd1	91	91.667	Maylandia_zebra
ENSPPYG00000017972	SND1	100	98.162	ENSMICG00000000097	SND1	94	98.162	Microcebus_murinus
ENSPPYG00000017972	SND1	100	97.891	ENSMOCG00000005040	Snd1	93	97.891	Microtus_ochrogaster
ENSPPYG00000017972	SND1	100	88.889	ENSMMOG00000001795	snd1	91	88.889	Mola_mola
ENSPPYG00000017972	SND1	98	95.460	ENSMODG00000015182	SND1	92	95.460	Monodelphis_domestica
ENSPPYG00000017972	SND1	100	91.667	ENSMALG00000012071	snd1	91	91.667	Monopterus_albus
ENSPPYG00000017972	SND1	100	97.519	MGP_CAROLIEiJ_G0028159	Snd1	99	98.314	Mus_caroli
ENSPPYG00000017972	SND1	98	97.345	ENSMUSG00000001424	Snd1	99	96.370	Mus_musculus
ENSPPYG00000017972	SND1	100	97.519	MGP_PahariEiJ_G0021917	Snd1	100	98.314	Mus_pahari
ENSPPYG00000017972	SND1	100	97.519	MGP_SPRETEiJ_G0029159	Snd1	99	96.700	Mus_spretus
ENSPPYG00000017972	SND1	100	98.263	ENSMPUG00000006545	SND1	93	98.263	Mustela_putorius_furo
ENSPPYG00000017972	SND1	97	97.219	ENSMLUG00000017130	SND1	93	97.219	Myotis_lucifugus
ENSPPYG00000017972	SND1	100	97.891	ENSNGAG00000011186	Snd1	93	97.891	Nannospalax_galili
ENSPPYG00000017972	SND1	99	91.667	ENSNBRG00000006681	snd1	91	91.667	Neolamprologus_brichardi
ENSPPYG00000017972	SND1	100	98.652	ENSNLEG00000012263	SND1	99	99.663	Nomascus_leucogenys
ENSPPYG00000017972	SND1	100	100.000	ENSOPRG00000013405	SND1	92	100.000	Ochotona_princeps
ENSPPYG00000017972	SND1	100	98.263	ENSODEG00000011502	SND1	93	98.263	Octodon_degus
ENSPPYG00000017972	SND1	99	91.667	ENSONIG00000011481	snd1	89	91.667	Oreochromis_niloticus
ENSPPYG00000017972	SND1	97	93.878	ENSOANG00000000817	SND1	92	93.190	Ornithorhynchus_anatinus
ENSPPYG00000017972	SND1	100	97.146	ENSOCUG00000001620	SND1	92	97.226	Oryctolagus_cuniculus
ENSPPYG00000017972	SND1	98	88.889	ENSORLG00000015201	snd1	91	88.889	Oryzias_latipes
ENSPPYG00000017972	SND1	98	88.889	ENSORLG00020013991	snd1	91	88.889	Oryzias_latipes_hni
ENSPPYG00000017972	SND1	98	88.889	ENSORLG00015012436	snd1	91	88.889	Oryzias_latipes_hsok
ENSPPYG00000017972	SND1	100	88.889	ENSOMEG00000006406	snd1	91	88.889	Oryzias_melastigma
ENSPPYG00000017972	SND1	100	97.922	ENSOGAG00000013356	SND1	89	97.922	Otolemur_garnettii
ENSPPYG00000017972	SND1	97	95.775	ENSOARG00000002149	SND1	93	95.775	Ovis_aries
ENSPPYG00000017972	SND1	100	99.628	ENSPPAG00000042947	SND1	93	99.628	Pan_paniscus
ENSPPYG00000017972	SND1	100	99.007	ENSPPRG00000004494	SND1	93	99.007	Panthera_pardus
ENSPPYG00000017972	SND1	100	98.883	ENSPTIG00000014214	SND1	93	98.883	Panthera_tigris_altaica
ENSPPYG00000017972	SND1	100	99.628	ENSPTRG00000023911	SND1	93	99.628	Pan_troglodytes
ENSPPYG00000017972	SND1	97	98.608	ENSPANG00000011997	SND1	94	98.608	Papio_anubis
ENSPPYG00000017972	SND1	99	86.111	ENSPKIG00000023494	snd1	91	86.111	Paramormyrops_kingsleyae
ENSPPYG00000017972	SND1	91	84.314	ENSPMGG00000003629	snd1	92	84.314	Periophthalmus_magnuspinnatus
ENSPPYG00000017972	SND1	100	97.767	ENSPEMG00000010240	Snd1	93	97.767	Peromyscus_maniculatus_bairdii
ENSPPYG00000017972	SND1	93	75.765	ENSPMAG00000007915	-	88	75.765	Petromyzon_marinus
ENSPPYG00000017972	SND1	98	95.839	ENSPCIG00000011561	SND1	92	95.839	Phascolarctos_cinereus
ENSPPYG00000017972	SND1	99	88.889	ENSPFOG00000001557	snd1	91	88.889	Poecilia_formosa
ENSPPYG00000017972	SND1	99	88.889	ENSPLAG00000018459	snd1	88	88.889	Poecilia_latipinna
ENSPPYG00000017972	SND1	99	88.889	ENSPMEG00000006803	snd1	91	88.889	Poecilia_mexicana
ENSPPYG00000017972	SND1	100	88.889	ENSPREG00000002189	snd1	91	88.889	Poecilia_reticulata
ENSPPYG00000017972	SND1	100	90.244	ENSPCAG00000011305	SND1	92	90.244	Procavia_capensis
ENSPPYG00000017972	SND1	100	98.284	ENSPCOG00000026791	SND1	94	98.284	Propithecus_coquereli
ENSPPYG00000017972	SND1	100	96.650	ENSPVAG00000013945	SND1	93	96.650	Pteropus_vampyrus
ENSPPYG00000017972	SND1	99	91.667	ENSPNYG00000000932	snd1	91	91.667	Pundamilia_nyererei
ENSPPYG00000017972	SND1	100	88.889	ENSPNAG00000001206	snd1	91	88.889	Pygocentrus_nattereri
ENSPPYG00000017972	SND1	98	97.345	ENSRNOG00000031173	Snd1	92	97.352	Rattus_norvegicus
ENSPPYG00000017972	SND1	79	99.436	ENSRBIG00000027782	-	93	99.620	Rhinopithecus_bieti
ENSPPYG00000017972	SND1	100	99.628	ENSRROG00000033020	SND1	93	99.628	Rhinopithecus_roxellana
ENSPPYG00000017972	SND1	100	99.132	ENSSBOG00000032461	SND1	97	96.627	Saimiri_boliviensis_boliviensis
ENSPPYG00000017972	SND1	97	92.219	ENSSHAG00000015359	SND1	93	92.219	Sarcophilus_harrisii
ENSPPYG00000017972	SND1	100	82.331	ENSSFOG00015001103	snd1	91	83.563	Scleropages_formosus
ENSPPYG00000017972	SND1	98	76.957	ENSSMAG00000001932	snd1	86	88.889	Scophthalmus_maximus
ENSPPYG00000017972	SND1	100	91.667	ENSSDUG00000002699	snd1	85	91.667	Seriola_dumerili
ENSPPYG00000017972	SND1	100	91.667	ENSSLDG00000001950	snd1	91	91.667	Seriola_lalandi_dorsalis
ENSPPYG00000017972	SND1	85	97.368	ENSSARG00000004877	SND1	84	97.368	Sorex_araneus
ENSPPYG00000017972	SND1	79	87.652	ENSSPUG00000017586	SND1	96	87.652	Sphenodon_punctatus
ENSPPYG00000017972	SND1	82	84.941	ENSSPAG00000021398	snd1	96	87.086	Stegastes_partitus
ENSPPYG00000017972	SND1	100	98.635	ENSSSCG00000016590	SND1	93	98.635	Sus_scrofa
ENSPPYG00000017972	SND1	99	86.111	ENSTRUG00000014067	snd1	91	86.111	Takifugu_rubripes
ENSPPYG00000017972	SND1	100	86.111	ENSTNIG00000011019	snd1	95	87.565	Tetraodon_nigroviridis
ENSPPYG00000017972	SND1	93	92.564	ENSTBEG00000003999	SND1	92	92.564	Tupaia_belangeri
ENSPPYG00000017972	SND1	100	93.672	ENSTTRG00000006059	SND1	93	93.672	Tursiops_truncatus
ENSPPYG00000017972	SND1	90	98.815	ENSUAMG00000005604	-	82	98.815	Ursus_americanus
ENSPPYG00000017972	SND1	78	90.390	ENSUAMG00000002820	-	86	90.323	Ursus_americanus
ENSPPYG00000017972	SND1	100	99.007	ENSUMAG00000005960	SND1	93	99.007	Ursus_maritimus
ENSPPYG00000017972	SND1	83	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSPPYG00000017972	SND1	100	99.007	ENSVVUG00000007226	SND1	93	99.007	Vulpes_vulpes
ENSPPYG00000017972	SND1	93	85.806	ENSXETG00000023043	snd1	88	86.328	Xenopus_tropicalis
ENSPPYG00000017972	SND1	91	83.399	ENSXCOG00000013629	snd1	90	83.399	Xiphophorus_couchianus
ENSPPYG00000017972	SND1	100	88.889	ENSXMAG00000011469	snd1	91	88.889	Xiphophorus_maculatus