EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPPYG00000020675 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Pongo_abelii
Status: putative
Strand: Minus strand
Length: 18490 bases
Position: chrX:118793650-118812139
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPPYP00000023142	Smg4_UPF3	PF03467.15	1.9e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPPYT00000024113	-	1148	-	ENSPPYP00000023142	331 (aa)	-	H2PWM0

Gene Model

Click here to download ENSPPYG00000020675's gene model file

Pathways

Pathway ID	Pathway Name	Source
pon03013	RNA transport	KEGG
pon03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPPYG00000020675's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPPYG00000020675	-	100	100.000	ENSG00000125351	UPF3B	99	98.131	Homo_sapiens
ENSPPYG00000020675	-	63	68.720	ENSAPOG00000012775	upf3b	56	68.132	Acanthochromis_polyacanthus
ENSPPYG00000020675	-	100	97.872	ENSAMEG00000000163	UPF3B	69	97.872	Ailuropoda_melanoleuca
ENSPPYG00000020675	-	82	59.854	ENSACIG00000013582	upf3b	56	61.314	Amphilophus_citrinellus
ENSPPYG00000020675	-	50	70.732	ENSACIG00000020468	upf3a	83	66.129	Amphilophus_citrinellus
ENSPPYG00000020675	-	82	66.667	ENSAOCG00000000706	upf3b	56	66.667	Amphiprion_ocellaris
ENSPPYG00000020675	-	63	68.720	ENSAPEG00000005545	upf3b	56	68.132	Amphiprion_percula
ENSPPYG00000020675	-	63	69.194	ENSATEG00000018742	upf3b	64	60.748	Anabas_testudineus
ENSPPYG00000020675	-	83	83.621	ENSACAG00000003625	UPF3B	67	76.190	Anolis_carolinensis
ENSPPYG00000020675	-	96	93.878	ENSANAG00000025598	-	100	85.196	Aotus_nancymaae
ENSPPYG00000020675	-	90	70.470	ENSANAG00000033169	-	100	69.799	Aotus_nancymaae
ENSPPYG00000020675	-	100	98.936	ENSANAG00000021894	-	97	98.558	Aotus_nancymaae
ENSPPYG00000020675	-	82	67.033	ENSACLG00000001649	upf3b	56	67.399	Astatotilapia_calliptera
ENSPPYG00000020675	-	95	59.561	ENSAMXG00000000199	upf3b	97	57.453	Astyanax_mexicanus
ENSPPYG00000020675	-	97	92.812	ENSBTAG00000035615	UPF3B	100	92.812	Bos_taurus
ENSPPYG00000020675	-	57	31.633	WBGene00004882	smg-4	50	31.098	Caenorhabditis_elegans
ENSPPYG00000020675	-	100	98.936	ENSCJAG00000004975	UPF3B	97	98.558	Callithrix_jacchus
ENSPPYG00000020675	-	100	97.163	ENSCAFG00000018426	UPF3B	69	97.163	Canis_familiaris
ENSPPYG00000020675	-	96	93.878	ENSCAFG00020004074	UPF3B	68	93.878	Canis_lupus_dingo
ENSPPYG00000020675	-	97	97.872	ENSCHIG00000018011	-	100	92.812	Capra_hircus
ENSPPYG00000020675	-	82	73.469	ENSCHIG00000011454	-	61	73.469	Capra_hircus
ENSPPYG00000020675	-	100	98.227	ENSCHIG00000000247	-	69	98.227	Capra_hircus
ENSPPYG00000020675	-	96	97.037	ENSTSYG00000014690	UPF3B	100	88.757	Carlito_syrichta
ENSPPYG00000020675	-	100	67.456	ENSCCAG00000021964	-	100	67.456	Cebus_capucinus
ENSPPYG00000020675	-	96	65.615	ENSCCAG00000029813	-	97	66.667	Cebus_capucinus
ENSPPYG00000020675	-	100	100.000	ENSCATG00000017506	UPF3B	97	100.000	Cercocebus_atys
ENSPPYG00000020675	-	96	94.815	ENSCLAG00000003260	UPF3B	68	94.815	Chinchilla_lanigera
ENSPPYG00000020675	-	100	100.000	ENSCSAG00000018348	UPF3B	69	100.000	Chlorocebus_sabaeus
ENSPPYG00000020675	-	95	68.248	ENSCPBG00000020685	UPF3B	58	77.586	Chrysemys_picta_bellii
ENSPPYG00000020675	-	54	46.667	ENSCING00000008396	-	91	51.370	Ciona_intestinalis
ENSPPYG00000020675	-	100	95.770	ENSCANG00000029220	UPF3B	100	95.770	Colobus_angolensis_palliatus
ENSPPYG00000020675	-	82	83.333	ENSCGRG00001013643	-	73	80.000	Cricetulus_griseus_chok1gshd
ENSPPYG00000020675	-	100	88.519	ENSCGRG00001006858	-	67	88.519	Cricetulus_griseus_chok1gshd
ENSPPYG00000020675	-	84	93.578	ENSCGRG00000007627	Upf3b	63	93.578	Cricetulus_griseus_crigri
ENSPPYG00000020675	-	82	66.545	ENSCSEG00000002046	upf3b	67	57.057	Cynoglossus_semilaevis
ENSPPYG00000020675	-	63	66.029	ENSCVAG00000005030	upf3b	57	64.964	Cyprinodon_variegatus
ENSPPYG00000020675	-	82	66.787	ENSDARG00000000489	upf3b	66	59.581	Danio_rerio
ENSPPYG00000020675	-	100	96.809	ENSDNOG00000008665	UPF3B	69	96.809	Dasypus_novemcinctus
ENSPPYG00000020675	-	96	90.000	ENSDORG00000006077	Upf3b	68	90.000	Dipodomys_ordii
ENSPPYG00000020675	-	96	94.444	ENSEASG00005012919	UPF3B	92	97.345	Equus_asinus_asinus
ENSPPYG00000020675	-	96	94.444	ENSECAG00000016947	UPF3B	92	89.474	Equus_caballus
ENSPPYG00000020675	-	82	67.273	ENSELUG00000020389	upf3b	54	66.547	Esox_lucius
ENSPPYG00000020675	-	100	97.518	ENSFCAG00000004388	UPF3B	82	97.518	Felis_catus
ENSPPYG00000020675	-	97	73.611	ENSFALG00000001569	UPF3B	67	71.875	Ficedula_albicollis
ENSPPYG00000020675	-	96	96.296	ENSFDAG00000018869	UPF3B	68	96.296	Fukomys_damarensis
ENSPPYG00000020675	-	63	66.029	ENSFHEG00000017895	upf3b	61	60.473	Fundulus_heteroclitus
ENSPPYG00000020675	-	95	73.913	ENSGALG00000008618	UPF3B	67	73.913	Gallus_gallus
ENSPPYG00000020675	-	63	65.550	ENSGAFG00000000829	upf3b	62	60.811	Gambusia_affinis
ENSPPYG00000020675	-	90	64.901	ENSGACG00000017435	upf3b	100	65.232	Gasterosteus_aculeatus
ENSPPYG00000020675	-	95	76.277	ENSGAGG00000001219	UPF3B	66	74.909	Gopherus_agassizii
ENSPPYG00000020675	-	50	68.485	ENSGAGG00000001952	UPF3A	81	73.944	Gopherus_agassizii
ENSPPYG00000020675	-	100	100.000	ENSGGOG00000023995	UPF3B	100	95.770	Gorilla_gorilla
ENSPPYG00000020675	-	82	67.033	ENSHBUG00000017393	upf3b	56	67.399	Haplochromis_burtoni
ENSPPYG00000020675	-	82	87.037	ENSHGLG00000011189	-	68	83.451	Heterocephalus_glaber_female
ENSPPYG00000020675	-	96	95.556	ENSHGLG00000019582	-	68	95.556	Heterocephalus_glaber_female
ENSPPYG00000020675	-	96	95.556	ENSHGLG00100002042	-	69	95.556	Heterocephalus_glaber_male
ENSPPYG00000020675	-	82	87.037	ENSHGLG00100001889	-	68	83.451	Heterocephalus_glaber_male
ENSPPYG00000020675	-	82	68.132	ENSHCOG00000017004	upf3b	55	68.132	Hippocampus_comes
ENSPPYG00000020675	-	53	67.978	ENSHCOG00000013985	upf3a	66	72.611	Hippocampus_comes
ENSPPYG00000020675	-	85	63.986	ENSIPUG00000019249	upf3b	65	62.500	Ictalurus_punctatus
ENSPPYG00000020675	-	96	95.926	ENSSTOG00000001101	UPF3B	68	95.926	Ictidomys_tridecemlineatus
ENSPPYG00000020675	-	97	93.382	ENSJJAG00000000053	Upf3b	68	93.382	Jaculus_jaculus
ENSPPYG00000020675	-	82	66.300	ENSKMAG00000020300	upf3b	65	58.567	Kryptolebias_marmoratus
ENSPPYG00000020675	-	82	66.300	ENSLBEG00000028689	upf3b	56	65.934	Labrus_bergylta
ENSPPYG00000020675	-	77	69.082	ENSLACG00000008691	UPF3B	65	68.613	Latimeria_chalumnae
ENSPPYG00000020675	-	82	67.273	ENSLOCG00000015238	upf3b	53	75.000	Lepisosteus_oculatus
ENSPPYG00000020675	-	96	96.667	ENSLAFG00000001267	UPF3B	68	96.667	Loxodonta_africana
ENSPPYG00000020675	-	72	52.321	ENSLAFG00000023358	UPF3A	51	67.516	Loxodonta_africana
ENSPPYG00000020675	-	66	72.124	ENSMFAG00000045275	-	94	71.429	Macaca_fascicularis
ENSPPYG00000020675	-	100	100.000	ENSMFAG00000045414	UPF3B	97	100.000	Macaca_fascicularis
ENSPPYG00000020675	-	100	100.000	ENSMMUG00000020222	UPF3B	97	100.000	Macaca_mulatta
ENSPPYG00000020675	-	66	69.912	ENSMMUG00000046682	-	94	65.899	Macaca_mulatta
ENSPPYG00000020675	-	66	71.681	ENSMNEG00000040898	-	94	70.968	Macaca_nemestrina
ENSPPYG00000020675	-	100	100.000	ENSMNEG00000039794	UPF3B	97	100.000	Macaca_nemestrina
ENSPPYG00000020675	-	100	100.000	ENSMLEG00000010999	UPF3B	97	100.000	Mandrillus_leucophaeus
ENSPPYG00000020675	-	82	67.033	ENSMZEG00005007871	upf3b	56	67.399	Maylandia_zebra
ENSPPYG00000020675	-	69	80.541	ENSMGAG00000007728	UPF3B	59	80.541	Meleagris_gallopavo
ENSPPYG00000020675	-	100	89.007	ENSMAUG00000008705	Upf3b	68	89.007	Mesocricetus_auratus
ENSPPYG00000020675	-	100	92.771	ENSMICG00000001743	UPF3B	100	92.771	Microcebus_murinus
ENSPPYG00000020675	-	100	93.617	ENSMOCG00000017893	Upf3b	69	93.617	Microtus_ochrogaster
ENSPPYG00000020675	-	63	63.679	ENSMMOG00000004183	upf3b	57	63.504	Mola_mola
ENSPPYG00000020675	-	80	83.857	ENSMODG00000010232	UPF3B	63	83.857	Monodelphis_domestica
ENSPPYG00000020675	-	82	67.033	ENSMALG00000008042	upf3b	56	67.399	Monopterus_albus
ENSPPYG00000020675	-	97	89.706	MGP_CAROLIEiJ_G0032999	Upf3b	72	89.706	Mus_caroli
ENSPPYG00000020675	-	97	90.074	ENSMUSG00000036572	Upf3b	72	90.074	Mus_musculus
ENSPPYG00000020675	-	97	89.706	MGP_PahariEiJ_G0031543	Upf3b	72	89.706	Mus_pahari
ENSPPYG00000020675	-	97	90.074	MGP_SPRETEiJ_G0034152	Upf3b	72	90.074	Mus_spretus
ENSPPYG00000020675	-	93	97.407	ENSMPUG00000001531	UPF3B	67	97.407	Mustela_putorius_furo
ENSPPYG00000020675	-	96	95.926	ENSMLUG00000010821	UPF3B	68	95.926	Myotis_lucifugus
ENSPPYG00000020675	-	96	89.259	ENSNGAG00000008231	Upf3b	68	89.259	Nannospalax_galili
ENSPPYG00000020675	-	62	62.621	ENSNBRG00000011560	upf3b	95	64.516	Neolamprologus_brichardi
ENSPPYG00000020675	-	66	76.959	ENSNLEG00000027516	-	94	76.442	Nomascus_leucogenys
ENSPPYG00000020675	-	100	99.645	ENSNLEG00000014897	UPF3B	79	99.324	Nomascus_leucogenys
ENSPPYG00000020675	-	68	79.386	ENSODEG00000007164	-	90	79.147	Octodon_degus
ENSPPYG00000020675	-	96	96.667	ENSODEG00000002186	-	75	96.667	Octodon_degus
ENSPPYG00000020675	-	51	62.722	ENSODEG00000009176	-	63	65.823	Octodon_degus
ENSPPYG00000020675	-	66	69.725	ENSODEG00000000596	-	95	69.378	Octodon_degus
ENSPPYG00000020675	-	66	73.272	ENSODEG00000006064	-	94	73.077	Octodon_degus
ENSPPYG00000020675	-	82	68.864	ENSONIG00000002536	upf3b	66	68.864	Oreochromis_niloticus
ENSPPYG00000020675	-	100	97.163	ENSOCUG00000010213	UPF3B	69	97.163	Oryctolagus_cuniculus
ENSPPYG00000020675	-	82	64.727	ENSORLG00000001026	upf3b	56	64.103	Oryzias_latipes
ENSPPYG00000020675	-	94	54.747	ENSORLG00020003758	upf3b	95	53.822	Oryzias_latipes_hni
ENSPPYG00000020675	-	82	64.364	ENSORLG00015012954	upf3b	56	63.736	Oryzias_latipes_hsok
ENSPPYG00000020675	-	93	84.871	ENSOGAG00000033003	-	67	84.871	Otolemur_garnettii
ENSPPYG00000020675	-	96	96.296	ENSOGAG00000004643	-	68	96.296	Otolemur_garnettii
ENSPPYG00000020675	-	86	75.113	ENSOARG00000007869	-	69	72.398	Ovis_aries
ENSPPYG00000020675	-	100	97.193	ENSOARG00000016051	-	69	97.193	Ovis_aries
ENSPPYG00000020675	-	100	100.000	ENSPPAG00000040390	UPF3B	100	95.770	Pan_paniscus
ENSPPYG00000020675	-	100	97.518	ENSPPRG00000023536	UPF3B	69	97.518	Panthera_pardus
ENSPPYG00000020675	-	100	97.518	ENSPTIG00000015264	UPF3B	100	92.447	Panthera_tigris_altaica
ENSPPYG00000020675	-	100	100.000	ENSPTRG00000022228	UPF3B	100	95.770	Pan_troglodytes
ENSPPYG00000020675	-	65	72.444	ENSPANG00000029350	-	93	70.833	Papio_anubis
ENSPPYG00000020675	-	100	100.000	ENSPANG00000000900	UPF3B	97	100.000	Papio_anubis
ENSPPYG00000020675	-	82	66.787	ENSPKIG00000019226	upf3b	74	78.261	Paramormyrops_kingsleyae
ENSPPYG00000020675	-	54	83.333	ENSPSIG00000005833	UPF3B	64	83.333	Pelodiscus_sinensis
ENSPPYG00000020675	-	82	67.033	ENSPMGG00000016067	upf3b	94	66.788	Periophthalmus_magnuspinnatus
ENSPPYG00000020675	-	100	92.908	ENSPEMG00000012352	Upf3b	68	92.908	Peromyscus_maniculatus_bairdii
ENSPPYG00000020675	-	89	74.000	ENSPCIG00000028914	UPF3B	58	74.576	Phascolarctos_cinereus
ENSPPYG00000020675	-	91	48.494	ENSPCIG00000019590	-	66	71.333	Phascolarctos_cinereus
ENSPPYG00000020675	-	63	66.507	ENSPLAG00000005105	upf3b	59	65.818	Poecilia_latipinna
ENSPPYG00000020675	-	52	68.750	ENSPLAG00000011960	upf3a	54	77.419	Poecilia_latipinna
ENSPPYG00000020675	-	63	66.507	ENSPLAG00000019922	upf3b	62	61.824	Poecilia_latipinna
ENSPPYG00000020675	-	63	66.507	ENSPMEG00000023532	upf3b	62	61.824	Poecilia_mexicana
ENSPPYG00000020675	-	100	96.099	ENSPCAG00000009464	UPF3B	69	96.099	Procavia_capensis
ENSPPYG00000020675	-	100	98.233	ENSPCOG00000021960	UPF3B	100	93.373	Propithecus_coquereli
ENSPPYG00000020675	-	100	85.714	ENSPVAG00000014075	UPF3B	68	85.714	Pteropus_vampyrus
ENSPPYG00000020675	-	82	67.033	ENSPNYG00000009846	upf3b	56	67.399	Pundamilia_nyererei
ENSPPYG00000020675	-	100	60.714	ENSPNAG00000021528	upf3b	96	62.500	Pygocentrus_nattereri
ENSPPYG00000020675	-	100	91.489	ENSRNOG00000039994	Upf3b	72	91.489	Rattus_norvegicus
ENSPPYG00000020675	-	74	99.490	ENSRBIG00000037219	UPF3B	71	97.959	Rhinopithecus_bieti
ENSPPYG00000020675	-	100	100.000	ENSRROG00000041031	UPF3B	97	100.000	Rhinopithecus_roxellana
ENSPPYG00000020675	-	100	98.582	ENSSBOG00000019740	UPF3B	99	97.596	Saimiri_boliviensis_boliviensis
ENSPPYG00000020675	-	82	83.857	ENSSHAG00000008634	UPF3B	52	87.500	Sarcophilus_harrisii
ENSPPYG00000020675	-	96	69.597	ENSSFOG00015005614	upf3b	57	68.498	Scleropages_formosus
ENSPPYG00000020675	-	90	66.333	ENSSMAG00000012913	upf3b	89	66.333	Scophthalmus_maximus
ENSPPYG00000020675	-	50	70.732	ENSSDUG00000009680	upf3a	57	76.344	Seriola_dumerili
ENSPPYG00000020675	-	63	66.351	ENSSDUG00000005682	upf3b	56	66.300	Seriola_dumerili
ENSPPYG00000020675	-	63	66.825	ENSSLDG00000003130	upf3b	56	66.667	Seriola_lalandi_dorsalis
ENSPPYG00000020675	-	84	93.913	ENSSARG00000004147	UPF3B	65	93.913	Sorex_araneus
ENSPPYG00000020675	-	95	72.924	ENSSPUG00000013082	UPF3B	67	70.036	Sphenodon_punctatus
ENSPPYG00000020675	-	50	70.732	ENSSPAG00000007938	upf3a	72	70.701	Stegastes_partitus
ENSPPYG00000020675	-	82	67.766	ENSSPAG00000009989	upf3b	56	67.766	Stegastes_partitus
ENSPPYG00000020675	-	96	97.407	ENSSSCG00000012617	UPF3B	68	97.407	Sus_scrofa
ENSPPYG00000020675	-	81	81.696	ENSTGUG00000003413	UPF3B	63	81.696	Taeniopygia_guttata
ENSPPYG00000020675	-	100	85.714	ENSTBEG00000003229	UPF3B	69	85.714	Tupaia_belangeri
ENSPPYG00000020675	-	96	93.878	ENSUAMG00000024565	UPF3B	67	93.878	Ursus_americanus
ENSPPYG00000020675	-	86	93.878	ENSUMAG00000002150	UPF3B	67	93.878	Ursus_maritimus
ENSPPYG00000020675	-	78	99.043	ENSVPAG00000009971	UPF3B	63	99.043	Vicugna_pacos
ENSPPYG00000020675	-	96	92.593	ENSVVUG00000011594	UPF3B	97	96.635	Vulpes_vulpes
ENSPPYG00000020675	-	60	81.218	ENSXETG00000007440	upf3b	74	79.532	Xenopus_tropicalis
ENSPPYG00000020675	-	63	65.566	ENSXCOG00000016586	upf3b	97	65.403	Xiphophorus_couchianus
ENSPPYG00000020675	-	63	65.072	ENSXMAG00000013680	upf3b	62	60.811	Xiphophorus_maculatus