EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000000059 (Gene tree)
Gene ID: 103462163
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 3686 bases
Position: chrLG1:1271526-1275211
Accession: 103462163
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000000042	PPR	PF01535.20	6.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000000066	-	2082	XM_008404766	ENSPREP00000000042	693 (aa)	XP_008402988	UPI0004A44BF4

Gene Model

Click here to download ENSPREG00000000059's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000000059's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000000059	ptcd1	84	46.777	ENSG00000106246	PTCD1	85	46.777	Homo_sapiens
ENSPREG00000000059	ptcd1	84	46.777	ENSG00000248919	ATP5MF-PTCD1	79	46.777	Homo_sapiens
ENSPREG00000000059	ptcd1	88	62.783	ENSAPOG00000010679	ptcd1	95	62.783	Acanthochromis_polyacanthus
ENSPREG00000000059	ptcd1	83	48.986	ENSAMEG00000006224	-	77	49.233	Ailuropoda_melanoleuca
ENSPREG00000000059	ptcd1	89	69.378	ENSACIG00000017861	ptcd1	89	70.213	Amphilophus_citrinellus
ENSPREG00000000059	ptcd1	98	61.980	ENSAOCG00000020741	-	98	61.693	Amphiprion_ocellaris
ENSPREG00000000059	ptcd1	88	62.862	ENSAOCG00000022617	ptcd1	93	62.862	Amphiprion_ocellaris
ENSPREG00000000059	ptcd1	98	61.516	ENSAPEG00000022632	ptcd1	98	61.373	Amphiprion_percula
ENSPREG00000000059	ptcd1	96	63.596	ENSATEG00000007016	ptcd1	98	63.195	Anabas_testudineus
ENSPREG00000000059	ptcd1	82	47.513	ENSAPLG00000006862	-	90	47.751	Anas_platyrhynchos
ENSPREG00000000059	ptcd1	82	48.217	ENSACAG00000012871	-	77	48.217	Anolis_carolinensis
ENSPREG00000000059	ptcd1	82	46.644	ENSANAG00000035790	-	85	46.801	Aotus_nancymaae
ENSPREG00000000059	ptcd1	90	69.921	ENSACLG00000002824	ptcd1	89	69.449	Astatotilapia_calliptera
ENSPREG00000000059	ptcd1	82	50.412	ENSAMXG00000037292	ptcd1	85	50.577	Astyanax_mexicanus
ENSPREG00000000059	ptcd1	89	45.840	ENSBTAG00000020440	-	73	48.414	Bos_taurus
ENSPREG00000000059	ptcd1	82	46.891	ENSCJAG00000015815	-	83	47.049	Callithrix_jacchus
ENSPREG00000000059	ptcd1	86	47.604	ENSCAFG00000015055	-	82	47.826	Canis_familiaris
ENSPREG00000000059	ptcd1	86	47.604	ENSCAFG00020014480	-	82	47.826	Canis_lupus_dingo
ENSPREG00000000059	ptcd1	89	47.227	ENSCHIG00000027000	-	89	47.468	Capra_hircus
ENSPREG00000000059	ptcd1	82	46.823	ENSTSYG00000029495	-	85	46.293	Carlito_syrichta
ENSPREG00000000059	ptcd1	82	46.644	ENSCAPG00000014660	-	88	46.801	Cavia_aperea
ENSPREG00000000059	ptcd1	82	47.148	ENSCPOG00000001780	-	88	45.498	Cavia_porcellus
ENSPREG00000000059	ptcd1	82	46.901	ENSCCAG00000034025	-	83	47.059	Cebus_capucinus
ENSPREG00000000059	ptcd1	81	47.458	ENSCATG00000040859	-	82	47.386	Cercocebus_atys
ENSPREG00000000059	ptcd1	82	47.871	ENSCLAG00000006354	-	83	48.376	Chinchilla_lanigera
ENSPREG00000000059	ptcd1	78	46.303	ENSCSAG00000017794	-	82	46.235	Chlorocebus_sabaeus
ENSPREG00000000059	ptcd1	90	44.148	ENSCPBG00000020866	-	90	44.478	Chrysemys_picta_bellii
ENSPREG00000000059	ptcd1	84	46.446	ENSCANG00000023441	-	84	46.446	Colobus_angolensis_palliatus
ENSPREG00000000059	ptcd1	83	48.142	ENSCGRG00001023686	Ptcd1	83	48.547	Cricetulus_griseus_chok1gshd
ENSPREG00000000059	ptcd1	83	48.142	ENSCGRG00000015031	Ptcd1	82	48.547	Cricetulus_griseus_crigri
ENSPREG00000000059	ptcd1	92	59.850	ENSCSEG00000002378	ptcd1	93	59.850	Cynoglossus_semilaevis
ENSPREG00000000059	ptcd1	94	75.191	ENSCVAG00000003621	ptcd1	97	75.776	Cyprinodon_variegatus
ENSPREG00000000059	ptcd1	99	74.821	ENSCVAG00000015826	ptcd1	99	74.392	Cyprinodon_variegatus
ENSPREG00000000059	ptcd1	92	49.319	ENSDARG00000076176	ptcd1	93	49.319	Danio_rerio
ENSPREG00000000059	ptcd1	83	47.659	ENSDNOG00000009957	-	85	47.308	Dasypus_novemcinctus
ENSPREG00000000059	ptcd1	83	45.605	ENSDORG00000000740	Ptcd1	84	46.077	Dipodomys_ordii
ENSPREG00000000059	ptcd1	81	39.713	ENSEBUG00000014515	ptcd1	93	39.459	Eptatretus_burgeri
ENSPREG00000000059	ptcd1	82	49.576	ENSEASG00005002480	-	83	49.663	Equus_asinus_asinus
ENSPREG00000000059	ptcd1	82	49.745	ENSECAG00000016617	-	83	49.832	Equus_caballus
ENSPREG00000000059	ptcd1	97	52.727	ENSELUG00000016517	ptcd1	90	54.627	Esox_lucius
ENSPREG00000000059	ptcd1	88	46.805	ENSFCAG00000015069	-	83	48.722	Felis_catus
ENSPREG00000000059	ptcd1	88	43.884	ENSFALG00000013803	-	89	45.426	Ficedula_albicollis
ENSPREG00000000059	ptcd1	82	48.067	ENSFDAG00000006393	-	83	48.398	Fukomys_damarensis
ENSPREG00000000059	ptcd1	78	78.727	ENSFHEG00000012491	ptcd1	95	78.182	Fundulus_heteroclitus
ENSPREG00000000059	ptcd1	88	61.465	ENSGMOG00000007639	ptcd1	99	61.146	Gadus_morhua
ENSPREG00000000059	ptcd1	82	45.950	ENSGALG00000004711	-	83	47.078	Gallus_gallus
ENSPREG00000000059	ptcd1	100	88.429	ENSGAFG00000013175	ptcd1	100	88.429	Gambusia_affinis
ENSPREG00000000059	ptcd1	90	67.717	ENSGACG00000016607	ptcd1	97	67.402	Gasterosteus_aculeatus
ENSPREG00000000059	ptcd1	79	46.561	ENSGAGG00000021832	-	84	46.299	Gopherus_agassizii
ENSPREG00000000059	ptcd1	88	45.070	ENSGGOG00000015123	-	85	47.088	Gorilla_gorilla
ENSPREG00000000059	ptcd1	90	69.401	ENSHBUG00000018275	ptcd1	89	68.927	Haplochromis_burtoni
ENSPREG00000000059	ptcd1	87	46.688	ENSHGLG00000017621	-	88	47.059	Heterocephalus_glaber_female
ENSPREG00000000059	ptcd1	87	46.688	ENSHGLG00100007218	-	88	47.059	Heterocephalus_glaber_male
ENSPREG00000000059	ptcd1	92	58.255	ENSHCOG00000010784	ptcd1	92	58.669	Hippocampus_comes
ENSPREG00000000059	ptcd1	84	48.339	ENSSTOG00000001682	-	84	48.911	Ictidomys_tridecemlineatus
ENSPREG00000000059	ptcd1	86	45.397	ENSJJAG00000000319	Ptcd1	88	45.714	Jaculus_jaculus
ENSPREG00000000059	ptcd1	94	68.806	ENSKMAG00000008708	ptcd1	95	68.358	Kryptolebias_marmoratus
ENSPREG00000000059	ptcd1	99	62.535	ENSLBEG00000008061	ptcd1	99	62.238	Labrus_bergylta
ENSPREG00000000059	ptcd1	82	50.514	ENSLACG00000011172	ptcd1	81	50.514	Latimeria_chalumnae
ENSPREG00000000059	ptcd1	83	50.000	ENSLOCG00000004833	ptcd1	92	50.000	Lepisosteus_oculatus
ENSPREG00000000059	ptcd1	82	47.731	ENSLAFG00000002588	-	82	47.966	Loxodonta_africana
ENSPREG00000000059	ptcd1	81	47.458	ENSMFAG00000041324	-	82	47.386	Macaca_fascicularis
ENSPREG00000000059	ptcd1	81	47.288	ENSMMUG00000030408	-	82	47.218	Macaca_mulatta
ENSPREG00000000059	ptcd1	81	47.458	ENSMNEG00000043786	-	82	47.386	Macaca_nemestrina
ENSPREG00000000059	ptcd1	81	35.406	ENSMLEG00000031179	-	80	36.598	Mandrillus_leucophaeus
ENSPREG00000000059	ptcd1	99	62.623	ENSMAMG00000007623	ptcd1	97	62.059	Mastacembelus_armatus
ENSPREG00000000059	ptcd1	90	69.764	ENSMZEG00005012722	ptcd1	89	69.291	Maylandia_zebra
ENSPREG00000000059	ptcd1	75	49.091	ENSMGAG00000004211	-	76	47.723	Meleagris_gallopavo
ENSPREG00000000059	ptcd1	87	44.444	ENSMICG00000017428	-	84	46.512	Microcebus_murinus
ENSPREG00000000059	ptcd1	99	63.245	ENSMMOG00000020243	ptcd1	98	63.004	Mola_mola
ENSPREG00000000059	ptcd1	87	45.283	ENSMODG00000001350	-	81	46.423	Monodelphis_domestica
ENSPREG00000000059	ptcd1	99	61.958	ENSMALG00000018442	ptcd1	98	61.592	Monopterus_albus
ENSPREG00000000059	ptcd1	83	47.069	MGP_CAROLIEiJ_G0028011	Ptcd1	83	47.627	Mus_caroli
ENSPREG00000000059	ptcd1	83	47.731	ENSMUSG00000029624	Ptcd1	83	48.294	Mus_musculus
ENSPREG00000000059	ptcd1	83	47.746	MGP_PahariEiJ_G0024580	Ptcd1	83	47.973	Mus_pahari
ENSPREG00000000059	ptcd1	83	47.395	MGP_SPRETEiJ_G0029012	Ptcd1	83	48.464	Mus_spretus
ENSPREG00000000059	ptcd1	88	46.582	ENSMPUG00000016518	-	88	48.315	Mustela_putorius_furo
ENSPREG00000000059	ptcd1	87	47.030	ENSMLUG00000010994	-	77	49.574	Myotis_lucifugus
ENSPREG00000000059	ptcd1	91	67.028	ENSNBRG00000010079	ptcd1	86	70.558	Neolamprologus_brichardi
ENSPREG00000000059	ptcd1	72	46.833	ENSNLEG00000011060	-	86	47.184	Nomascus_leucogenys
ENSPREG00000000059	ptcd1	87	44.462	ENSMEUG00000006930	-	85	45.667	Notamacropus_eugenii
ENSPREG00000000059	ptcd1	77	56.897	ENSOPRG00000013647	-	73	58.824	Ochotona_princeps
ENSPREG00000000059	ptcd1	86	67.881	ENSONIG00000003168	ptcd1	100	67.384	Oreochromis_niloticus
ENSPREG00000000059	ptcd1	80	45.739	ENSOANG00000007728	-	74	45.645	Ornithorhynchus_anatinus
ENSPREG00000000059	ptcd1	87	45.994	ENSOCUG00000010584	-	88	45.327	Oryctolagus_cuniculus
ENSPREG00000000059	ptcd1	89	68.489	ENSORLG00000009275	ptcd1	91	68.489	Oryzias_latipes
ENSPREG00000000059	ptcd1	97	65.000	ENSORLG00020000988	ptcd1	99	65.000	Oryzias_latipes_hni
ENSPREG00000000059	ptcd1	97	64.317	ENSORLG00015010557	ptcd1	99	64.317	Oryzias_latipes_hsok
ENSPREG00000000059	ptcd1	95	66.024	ENSOMEG00000020627	ptcd1	94	67.290	Oryzias_melastigma
ENSPREG00000000059	ptcd1	82	47.029	ENSOGAG00000010877	-	84	47.019	Otolemur_garnettii
ENSPREG00000000059	ptcd1	89	42.857	ENSOARG00000018676	-	89	43.101	Ovis_aries
ENSPREG00000000059	ptcd1	84	45.964	ENSPPAG00000036024	-	85	45.964	Pan_paniscus
ENSPREG00000000059	ptcd1	88	47.444	ENSPPRG00000003478	-	83	49.404	Panthera_pardus
ENSPREG00000000059	ptcd1	84	46.129	ENSPTRG00000019452	-	85	46.129	Pan_troglodytes
ENSPREG00000000059	ptcd1	81	47.627	ENSPANG00000016730	-	82	47.555	Papio_anubis
ENSPREG00000000059	ptcd1	82	50.337	ENSPKIG00000014215	ptcd1	84	51.203	Paramormyrops_kingsleyae
ENSPREG00000000059	ptcd1	82	45.608	ENSPSIG00000011184	-	97	45.997	Pelodiscus_sinensis
ENSPREG00000000059	ptcd1	72	41.233	ENSPMAG00000009667	ptcd1	100	41.233	Petromyzon_marinus
ENSPREG00000000059	ptcd1	83	45.082	ENSPCIG00000024778	-	81	45.364	Phascolarctos_cinereus
ENSPREG00000000059	ptcd1	100	92.286	ENSPFOG00000004458	ptcd1	100	92.571	Poecilia_formosa
ENSPREG00000000059	ptcd1	100	93.113	ENSPLAG00000011051	ptcd1	100	93.400	Poecilia_latipinna
ENSPREG00000000059	ptcd1	100	92.429	ENSPMEG00000020547	ptcd1	100	92.714	Poecilia_mexicana
ENSPREG00000000059	ptcd1	87	44.565	ENSPPYG00000017377	-	89	46.458	Pongo_abelii
ENSPREG00000000059	ptcd1	73	59.200	ENSPCAG00000001852	-	80	59.200	Procavia_capensis
ENSPREG00000000059	ptcd1	82	46.812	ENSPCOG00000018596	-	84	47.010	Propithecus_coquereli
ENSPREG00000000059	ptcd1	56	54.138	ENSPVAG00000007529	-	60	54.138	Pteropus_vampyrus
ENSPREG00000000059	ptcd1	90	69.764	ENSPNYG00000019993	ptcd1	89	69.291	Pundamilia_nyererei
ENSPREG00000000059	ptcd1	87	51.294	ENSPNAG00000014931	ptcd1	92	50.309	Pygocentrus_nattereri
ENSPREG00000000059	ptcd1	82	47.483	ENSRNOG00000000987	Ptcd1	84	47.643	Rattus_norvegicus
ENSPREG00000000059	ptcd1	84	46.766	ENSRBIG00000043393	-	84	46.766	Rhinopithecus_bieti
ENSPREG00000000059	ptcd1	84	46.446	ENSRROG00000036420	-	84	46.446	Rhinopithecus_roxellana
ENSPREG00000000059	ptcd1	82	46.980	ENSSBOG00000024114	-	83	47.138	Saimiri_boliviensis_boliviensis
ENSPREG00000000059	ptcd1	84	48.093	ENSSHAG00000011376	-	91	48.093	Sarcophilus_harrisii
ENSPREG00000000059	ptcd1	83	51.581	ENSSFOG00015007909	ptcd1	80	51.926	Scleropages_formosus
ENSPREG00000000059	ptcd1	89	64.342	ENSSMAG00000000218	ptcd1	99	64.184	Scophthalmus_maximus
ENSPREG00000000059	ptcd1	88	68.058	ENSSDUG00000015671	ptcd1	90	66.403	Seriola_dumerili
ENSPREG00000000059	ptcd1	89	66.878	ENSSLDG00000014261	ptcd1	86	69.269	Seriola_lalandi_dorsalis
ENSPREG00000000059	ptcd1	91	43.988	ENSSPUG00000003540	-	90	44.428	Sphenodon_punctatus
ENSPREG00000000059	ptcd1	99	64.225	ENSSPAG00000011049	ptcd1	98	63.701	Stegastes_partitus
ENSPREG00000000059	ptcd1	82	49.410	ENSSSCG00000007622	-	88	49.577	Sus_scrofa
ENSPREG00000000059	ptcd1	82	45.876	ENSTGUG00000007563	-	94	46.447	Taeniopygia_guttata
ENSPREG00000000059	ptcd1	90	65.170	ENSTRUG00000013471	ptcd1	92	64.468	Takifugu_rubripes
ENSPREG00000000059	ptcd1	90	65.469	ENSTNIG00000008271	ptcd1	89	66.451	Tetraodon_nigroviridis
ENSPREG00000000059	ptcd1	88	46.022	ENSTBEG00000011021	-	85	47.300	Tupaia_belangeri
ENSPREG00000000059	ptcd1	84	47.533	ENSTTRG00000003006	-	84	47.761	Tursiops_truncatus
ENSPREG00000000059	ptcd1	83	48.154	ENSUAMG00000008049	-	83	48.900	Ursus_americanus
ENSPREG00000000059	ptcd1	83	49.239	ENSVVUG00000008836	-	83	49.488	Vulpes_vulpes
ENSPREG00000000059	ptcd1	84	47.360	ENSXETG00000009891	ptcd1	86	47.333	Xenopus_tropicalis
ENSPREG00000000059	ptcd1	100	89.000	ENSXMAG00000015540	ptcd1	100	89.143	Xiphophorus_maculatus