EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000000147 (Gene tree)
Gene ID: 103482010
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 13589 bases
Position: chrLG1:3983400-3996988
Accession: 103482010
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000000165	RNA_bind	PF08675.11	1.6e-33	1	1
ENSPREP00000000165	CAF1	PF04857.20	2e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000000189	-	4294	XM_008437942	ENSPREP00000000165	683 (aa)	XP_008436164	UPI0004A47994

Gene Model

Click here to download ENSPREG00000000147's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000000147's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000000147	parn	84	72.896	ENSG00000140694	PARN	91	79.661	Homo_sapiens
ENSPREG00000000147	parn	78	77.095	ENSAMEG00000011208	PARN	83	77.095	Ailuropoda_melanoleuca
ENSPREG00000000147	parn	87	79.251	ENSACIG00000000619	parn	100	79.251	Amphilophus_citrinellus
ENSPREG00000000147	parn	100	83.599	ENSAOCG00000003465	parn	100	83.599	Amphiprion_ocellaris
ENSPREG00000000147	parn	73	87.976	ENSAPEG00000010661	parn	95	87.976	Amphiprion_percula
ENSPREG00000000147	parn	100	83.965	ENSATEG00000004661	parn	100	84.548	Anabas_testudineus
ENSPREG00000000147	parn	82	72.366	ENSAPLG00000013914	PARN	89	72.997	Anas_platyrhynchos
ENSPREG00000000147	parn	84	73.367	ENSACAG00000004973	PARN	89	74.106	Anolis_carolinensis
ENSPREG00000000147	parn	84	72.559	ENSANAG00000031516	PARN	91	79.661	Aotus_nancymaae
ENSPREG00000000147	parn	100	84.818	ENSACLG00000004742	parn	100	85.255	Astatotilapia_calliptera
ENSPREG00000000147	parn	100	70.203	ENSAMXG00000012390	parn	96	74.124	Astyanax_mexicanus
ENSPREG00000000147	parn	84	69.764	ENSBTAG00000018097	PARN	89	72.745	Bos_taurus
ENSPREG00000000147	parn	84	72.727	ENSCJAG00000015866	PARN	91	79.661	Callithrix_jacchus
ENSPREG00000000147	parn	84	71.044	ENSCAFG00000018795	PARN	83	76.679	Canis_familiaris
ENSPREG00000000147	parn	84	71.212	ENSCAFG00020024126	PARN	83	76.866	Canis_lupus_dingo
ENSPREG00000000147	parn	84	72.635	ENSCHIG00000018143	PARN	90	73.368	Capra_hircus
ENSPREG00000000147	parn	69	51.143	ENSCAPG00000007984	PARN	78	51.143	Cavia_aperea
ENSPREG00000000147	parn	84	72.250	ENSCPOG00000002263	PARN	91	72.384	Cavia_porcellus
ENSPREG00000000147	parn	84	72.727	ENSCCAG00000030367	PARN	91	79.661	Cebus_capucinus
ENSPREG00000000147	parn	78	77.239	ENSCATG00000041368	PARN	95	77.239	Cercocebus_atys
ENSPREG00000000147	parn	84	72.973	ENSCLAG00000015406	PARN	90	73.793	Chinchilla_lanigera
ENSPREG00000000147	parn	84	72.727	ENSCSAG00000008142	PARN	83	77.612	Chlorocebus_sabaeus
ENSPREG00000000147	parn	82	56.477	ENSCHOG00000007014	PARN	90	56.620	Choloepus_hoffmanni
ENSPREG00000000147	parn	74	73.092	ENSCPBG00000006609	PARN	89	73.218	Chrysemys_picta_bellii
ENSPREG00000000147	parn	75	40.824	ENSCING00000010142	-	99	40.824	Ciona_intestinalis
ENSPREG00000000147	parn	84	62.109	ENSCANG00000028849	-	76	79.661	Colobus_angolensis_palliatus
ENSPREG00000000147	parn	83	73.183	ENSCGRG00001012096	Parn	84	76.493	Cricetulus_griseus_chok1gshd
ENSPREG00000000147	parn	83	73.183	ENSCGRG00000004939	Parn	84	76.493	Cricetulus_griseus_crigri
ENSPREG00000000147	parn	100	79.476	ENSCSEG00000002064	parn	100	79.476	Cynoglossus_semilaevis
ENSPREG00000000147	parn	100	91.069	ENSCVAG00000014848	parn	100	91.069	Cyprinodon_variegatus
ENSPREG00000000147	parn	100	65.994	ENSDARG00000102634	parn	100	66.667	Danio_rerio
ENSPREG00000000147	parn	84	72.420	ENSDNOG00000000833	PARN	94	77.425	Dasypus_novemcinctus
ENSPREG00000000147	parn	61	73.485	ENSETEG00000014828	-	69	73.485	Echinops_telfairi
ENSPREG00000000147	parn	83	72.727	ENSEASG00005011400	PARN	90	72.806	Equus_asinus_asinus
ENSPREG00000000147	parn	84	72.109	ENSECAG00000017792	PARN	90	72.633	Equus_caballus
ENSPREG00000000147	parn	62	79.630	ENSEEUG00000010370	PARN	70	63.063	Erinaceus_europaeus
ENSPREG00000000147	parn	100	73.692	ENSELUG00000013139	parn	90	73.508	Esox_lucius
ENSPREG00000000147	parn	84	71.644	ENSFCAG00000044961	PARN	83	77.612	Felis_catus
ENSPREG00000000147	parn	83	72.184	ENSFALG00000003911	PARN	98	64.106	Ficedula_albicollis
ENSPREG00000000147	parn	84	72.804	ENSFDAG00000009234	PARN	90	73.621	Fukomys_damarensis
ENSPREG00000000147	parn	87	86.891	ENSFHEG00000013738	parn	92	96.610	Fundulus_heteroclitus
ENSPREG00000000147	parn	81	82.396	ENSGMOG00000003231	parn	99	82.396	Gadus_morhua
ENSPREG00000000147	parn	90	68.594	ENSGALG00000003091	PARN	84	76.866	Gallus_gallus
ENSPREG00000000147	parn	100	97.664	ENSGAFG00000011061	parn	100	97.664	Gambusia_affinis
ENSPREG00000000147	parn	100	73.043	ENSGACG00000019501	parn	100	74.348	Gasterosteus_aculeatus
ENSPREG00000000147	parn	84	72.896	ENSGGOG00000025224	PARN	91	79.661	Gorilla_gorilla
ENSPREG00000000147	parn	100	85.401	ENSHBUG00000017906	parn	100	85.401	Haplochromis_burtoni
ENSPREG00000000147	parn	84	72.635	ENSHGLG00000010886	PARN	91	72.899	Heterocephalus_glaber_female
ENSPREG00000000147	parn	84	72.635	ENSHGLG00100014659	PARN	91	72.899	Heterocephalus_glaber_male
ENSPREG00000000147	parn	81	79.566	ENSHCOG00000008683	parn	95	79.566	Hippocampus_comes
ENSPREG00000000147	parn	100	59.479	ENSIPUG00000012401	parn	100	59.682	Ictalurus_punctatus
ENSPREG00000000147	parn	84	71.644	ENSSTOG00000007519	PARN	91	72.355	Ictidomys_tridecemlineatus
ENSPREG00000000147	parn	84	72.014	ENSJJAG00000023049	Parn	90	72.743	Jaculus_jaculus
ENSPREG00000000147	parn	100	87.408	ENSKMAG00000009462	parn	100	86.676	Kryptolebias_marmoratus
ENSPREG00000000147	parn	93	84.013	ENSLBEG00000009167	parn	99	84.013	Labrus_bergylta
ENSPREG00000000147	parn	73	73.810	ENSLACG00000004207	PARN	100	72.642	Latimeria_chalumnae
ENSPREG00000000147	parn	100	68.867	ENSLOCG00000000715	parn	100	68.723	Lepisosteus_oculatus
ENSPREG00000000147	parn	84	73.242	ENSLAFG00000015036	PARN	90	73.822	Loxodonta_africana
ENSPREG00000000147	parn	84	69.360	ENSMFAG00000044852	PARN	89	72.275	Macaca_fascicularis
ENSPREG00000000147	parn	84	72.559	ENSMMUG00000018849	PARN	83	77.425	Macaca_mulatta
ENSPREG00000000147	parn	84	72.727	ENSMNEG00000045108	PARN	83	77.612	Macaca_nemestrina
ENSPREG00000000147	parn	84	72.559	ENSMLEG00000031743	PARN	83	77.425	Mandrillus_leucophaeus
ENSPREG00000000147	parn	100	84.134	ENSMAMG00000006939	parn	100	83.988	Mastacembelus_armatus
ENSPREG00000000147	parn	100	84.818	ENSMZEG00005013590	parn	100	85.255	Maylandia_zebra
ENSPREG00000000147	parn	83	69.440	ENSMGAG00000001004	PARN	82	74.432	Meleagris_gallopavo
ENSPREG00000000147	parn	83	67.291	ENSMAUG00000008025	Parn	90	67.526	Mesocricetus_auratus
ENSPREG00000000147	parn	84	72.222	ENSMICG00000016053	PARN	91	77.966	Microcebus_murinus
ENSPREG00000000147	parn	72	78.384	ENSMOCG00000022211	Parn	100	78.384	Microtus_ochrogaster
ENSPREG00000000147	parn	81	85.714	ENSMMOG00000011333	parn	90	85.714	Mola_mola
ENSPREG00000000147	parn	72	80.483	ENSMODG00000004915	PARN	99	80.483	Monodelphis_domestica
ENSPREG00000000147	parn	96	84.018	ENSMALG00000019426	parn	94	88.448	Monopterus_albus
ENSPREG00000000147	parn	83	72.117	MGP_CAROLIEiJ_G0020466	Parn	90	72.125	Mus_caroli
ENSPREG00000000147	parn	83	71.945	ENSMUSG00000022685	Parn	100	74.390	Mus_musculus
ENSPREG00000000147	parn	82	72.474	MGP_PahariEiJ_G0016172	Parn	90	72.474	Mus_pahari
ENSPREG00000000147	parn	83	72.289	MGP_SPRETEiJ_G0021361	Parn	89	73.077	Mus_spretus
ENSPREG00000000147	parn	84	71.912	ENSMPUG00000014464	PARN	90	72.806	Mustela_putorius_furo
ENSPREG00000000147	parn	72	77.374	ENSMLUG00000005414	PARN	100	77.374	Myotis_lucifugus
ENSPREG00000000147	parn	81	88.246	ENSNBRG00000006805	parn	93	88.246	Neolamprologus_brichardi
ENSPREG00000000147	parn	84	72.896	ENSNLEG00000010241	PARN	91	79.661	Nomascus_leucogenys
ENSPREG00000000147	parn	69	65.000	ENSMEUG00000008178	-	74	65.000	Notamacropus_eugenii
ENSPREG00000000147	parn	82	67.876	ENSOPRG00000012187	PARN	90	68.118	Ochotona_princeps
ENSPREG00000000147	parn	84	68.284	ENSODEG00000001617	PARN	90	68.541	Octodon_degus
ENSPREG00000000147	parn	100	85.401	ENSONIG00000000151	parn	100	85.401	Oreochromis_niloticus
ENSPREG00000000147	parn	83	72.308	ENSOCUG00000000322	PARN	90	72.870	Oryctolagus_cuniculus
ENSPREG00000000147	parn	100	81.725	ENSORLG00020010313	parn	100	82.164	Oryzias_latipes_hni
ENSPREG00000000147	parn	100	81.871	ENSORLG00015000300	parn	100	82.310	Oryzias_latipes_hsok
ENSPREG00000000147	parn	100	81.022	ENSOMEG00000019555	parn	100	81.022	Oryzias_melastigma
ENSPREG00000000147	parn	72	77.419	ENSOGAG00000014626	PARN	100	77.419	Otolemur_garnettii
ENSPREG00000000147	parn	72	79.394	ENSOARG00000007574	PARN	100	79.394	Ovis_aries
ENSPREG00000000147	parn	84	72.727	ENSPPAG00000031438	PARN	91	79.661	Pan_paniscus
ENSPREG00000000147	parn	84	71.644	ENSPPRG00000018583	PARN	83	77.612	Panthera_pardus
ENSPREG00000000147	parn	84	71.644	ENSPTIG00000012135	PARN	83	77.612	Panthera_tigris_altaica
ENSPREG00000000147	parn	84	72.727	ENSPTRG00000007792	PARN	91	79.661	Pan_troglodytes
ENSPREG00000000147	parn	84	70.202	ENSPANG00000020099	PARN	83	74.627	Papio_anubis
ENSPREG00000000147	parn	99	67.994	ENSPKIG00000022807	parn	96	67.094	Paramormyrops_kingsleyae
ENSPREG00000000147	parn	83	73.345	ENSPSIG00000014804	PARN	90	73.630	Pelodiscus_sinensis
ENSPREG00000000147	parn	90	76.098	ENSPMGG00000014431	parn	85	76.423	Periophthalmus_magnuspinnatus
ENSPREG00000000147	parn	83	70.884	ENSPEMG00000018439	Parn	90	71.154	Peromyscus_maniculatus_bairdii
ENSPREG00000000147	parn	76	68.593	ENSPMAG00000003956	parn	98	68.593	Petromyzon_marinus
ENSPREG00000000147	parn	62	71.934	ENSPCIG00000001259	PARN	91	79.661	Phascolarctos_cinereus
ENSPREG00000000147	parn	100	98.536	ENSPFOG00000012823	parn	100	98.536	Poecilia_formosa
ENSPREG00000000147	parn	100	98.829	ENSPLAG00000006395	parn	100	98.829	Poecilia_latipinna
ENSPREG00000000147	parn	100	98.829	ENSPMEG00000007711	parn	100	98.829	Poecilia_mexicana
ENSPREG00000000147	parn	84	72.315	ENSPPYG00000007123	PARN	83	77.138	Pongo_abelii
ENSPREG00000000147	parn	79	62.143	ENSPCAG00000001741	PARN	82	66.998	Procavia_capensis
ENSPREG00000000147	parn	84	69.412	ENSPCOG00000019292	PARN	91	77.966	Propithecus_coquereli
ENSPREG00000000147	parn	83	69.231	ENSPVAG00000002547	PARN	83	74.291	Pteropus_vampyrus
ENSPREG00000000147	parn	100	85.109	ENSPNYG00000006835	parn	100	85.109	Pundamilia_nyererei
ENSPREG00000000147	parn	93	69.782	ENSPNAG00000018905	parn	100	69.626	Pygocentrus_nattereri
ENSPREG00000000147	parn	100	63.778	ENSRNOG00000002912	Parn	96	77.551	Rattus_norvegicus
ENSPREG00000000147	parn	84	70.875	ENSSBOG00000034726	PARN	83	75.560	Saimiri_boliviensis_boliviensis
ENSPREG00000000147	parn	61	78.947	ENSSHAG00000008493	PARN	93	78.947	Sarcophilus_harrisii
ENSPREG00000000147	parn	100	69.044	ENSSFOG00015014165	parn	98	72.500	Scleropages_formosus
ENSPREG00000000147	parn	100	80.687	ENSSMAG00000000685	parn	100	80.687	Scophthalmus_maximus
ENSPREG00000000147	parn	100	84.884	ENSSDUG00000014555	parn	100	85.320	Seriola_dumerili
ENSPREG00000000147	parn	64	79.310	ENSSARG00000014339	PARN	75	79.310	Sorex_araneus
ENSPREG00000000147	parn	84	72.420	ENSSPUG00000007719	PARN	90	72.931	Sphenodon_punctatus
ENSPREG00000000147	parn	100	85.547	ENSSPAG00000007095	parn	100	85.547	Stegastes_partitus
ENSPREG00000000147	parn	84	72.034	ENSSSCG00000007878	PARN	80	72.931	Sus_scrofa
ENSPREG00000000147	parn	83	71.966	ENSTGUG00000004971	PARN	82	77.170	Taeniopygia_guttata
ENSPREG00000000147	parn	83	85.088	ENSTNIG00000008252	parn	100	74.273	Tetraodon_nigroviridis
ENSPREG00000000147	parn	75	61.236	ENSTBEG00000010407	PARN	89	61.686	Tupaia_belangeri
ENSPREG00000000147	parn	71	78.439	ENSTTRG00000002843	PARN	77	78.439	Tursiops_truncatus
ENSPREG00000000147	parn	64	69.108	ENSUAMG00000008283	PARN	94	65.446	Ursus_americanus
ENSPREG00000000147	parn	84	71.644	ENSUMAG00000004527	PARN	83	77.612	Ursus_maritimus
ENSPREG00000000147	parn	82	69.948	ENSVPAG00000008968	PARN	93	70.017	Vicugna_pacos
ENSPREG00000000147	parn	84	71.380	ENSVVUG00000019509	PARN	83	77.052	Vulpes_vulpes
ENSPREG00000000147	parn	78	74.717	ENSXETG00000010994	parn	100	74.717	Xenopus_tropicalis
ENSPREG00000000147	parn	87	92.282	ENSXCOG00000015990	parn	100	92.282	Xiphophorus_couchianus
ENSPREG00000000147	parn	100	96.925	ENSXMAG00000014783	parn	100	96.925	Xiphophorus_maculatus