EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000000405 (Gene tree)
Gene ID: 103465746
Gene Symbol: exosc1
Alias: -
Full Name: exosome component 1
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 5441 bases
Position: chrLG1:11694148-11699588
Accession: 103465746
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000000537	EXOSC1	PF10447.9	2.5e-12	1	1
ENSPREP00000000537	ECR1_N	PF14382.6	3.6e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000000567	-	540	XM_008410872	ENSPREP00000000537	179 (aa)	XP_008409094	-

Gene Model

Click here to download ENSPREG00000000405's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000000405's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000000405	exosc1	93	74.699	ENSG00000171311	EXOSC1	98	74.699	Homo_sapiens
ENSPREG00000000405	exosc1	94	76.804	ENSAPOG00000007822	exosc1	100	76.804	Acanthochromis_polyacanthus
ENSPREG00000000405	exosc1	93	66.146	ENSAMEG00000000129	EXOSC1	98	66.146	Ailuropoda_melanoleuca
ENSPREG00000000405	exosc1	89	75.676	ENSACIG00000018956	exosc1	91	75.676	Amphilophus_citrinellus
ENSPREG00000000405	exosc1	94	76.289	ENSAOCG00000010699	exosc1	100	76.289	Amphiprion_ocellaris
ENSPREG00000000405	exosc1	87	65.556	ENSAPEG00000012690	exosc1	97	65.556	Amphiprion_percula
ENSPREG00000000405	exosc1	94	76.804	ENSATEG00000018683	exosc1	100	76.804	Anabas_testudineus
ENSPREG00000000405	exosc1	94	61.856	ENSACAG00000002101	EXOSC1	99	61.856	Anolis_carolinensis
ENSPREG00000000405	exosc1	93	75.301	ENSANAG00000034669	EXOSC1	98	75.301	Aotus_nancymaae
ENSPREG00000000405	exosc1	94	76.289	ENSACLG00000021243	exosc1	100	76.289	Astatotilapia_calliptera
ENSPREG00000000405	exosc1	94	73.196	ENSAMXG00000011116	exosc1	100	73.196	Astyanax_mexicanus
ENSPREG00000000405	exosc1	93	66.146	ENSBTAG00000012699	EXOSC1	98	66.146	Bos_taurus
ENSPREG00000000405	exosc1	93	74.699	ENSCJAG00000016586	EXOSC1	98	74.699	Callithrix_jacchus
ENSPREG00000000405	exosc1	93	66.146	ENSCAFG00000009068	EXOSC1	93	66.146	Canis_familiaris
ENSPREG00000000405	exosc1	93	66.146	ENSCAFG00020006002	EXOSC1	93	66.146	Canis_lupus_dingo
ENSPREG00000000405	exosc1	93	66.146	ENSCHIG00000015253	EXOSC1	98	66.146	Capra_hircus
ENSPREG00000000405	exosc1	93	74.699	ENSTSYG00000000760	EXOSC1	98	74.699	Carlito_syrichta
ENSPREG00000000405	exosc1	93	66.146	ENSCPOG00000001173	EXOSC1	98	66.146	Cavia_porcellus
ENSPREG00000000405	exosc1	93	42.169	ENSCCAG00000023986	EXOSC1	97	42.169	Cebus_capucinus
ENSPREG00000000405	exosc1	93	74.699	ENSCATG00000034114	EXOSC1	98	74.699	Cercocebus_atys
ENSPREG00000000405	exosc1	93	66.146	ENSCLAG00000002463	EXOSC1	98	66.146	Chinchilla_lanigera
ENSPREG00000000405	exosc1	93	64.062	ENSCSAG00000005870	EXOSC1	98	64.062	Chlorocebus_sabaeus
ENSPREG00000000405	exosc1	89	64.130	ENSCHOG00000006477	EXOSC1	98	64.130	Choloepus_hoffmanni
ENSPREG00000000405	exosc1	91	45.745	ENSCING00000022734	-	90	45.745	Ciona_intestinalis
ENSPREG00000000405	exosc1	93	48.705	ENSCSAVG00000010865	-	98	48.705	Ciona_savignyi
ENSPREG00000000405	exosc1	93	74.699	ENSCANG00000034159	EXOSC1	98	74.699	Colobus_angolensis_palliatus
ENSPREG00000000405	exosc1	93	65.969	ENSCGRG00001000335	Exosc1	98	65.969	Cricetulus_griseus_chok1gshd
ENSPREG00000000405	exosc1	93	65.969	ENSCGRG00000011602	Exosc1	98	65.969	Cricetulus_griseus_crigri
ENSPREG00000000405	exosc1	97	85.549	ENSCSEG00000007895	exosc1	99	85.549	Cynoglossus_semilaevis
ENSPREG00000000405	exosc1	94	83.505	ENSCVAG00000016748	exosc1	100	83.505	Cyprinodon_variegatus
ENSPREG00000000405	exosc1	94	73.196	ENSDARG00000059841	exosc1	100	73.196	Danio_rerio
ENSPREG00000000405	exosc1	66	61.379	ENSDNOG00000007983	EXOSC1	98	61.379	Dasypus_novemcinctus
ENSPREG00000000405	exosc1	93	65.625	ENSDORG00000016528	Exosc1	98	65.625	Dipodomys_ordii
ENSPREG00000000405	exosc1	89	44.737	FBgn0032346	Csl4	92	44.737	Drosophila_melanogaster
ENSPREG00000000405	exosc1	93	66.146	ENSETEG00000002469	-	98	66.146	Echinops_telfairi
ENSPREG00000000405	exosc1	92	55.729	ENSEBUG00000008164	exosc1	96	55.729	Eptatretus_burgeri
ENSPREG00000000405	exosc1	93	68.478	ENSEASG00005008684	EXOSC1	98	68.478	Equus_asinus_asinus
ENSPREG00000000405	exosc1	51	55.046	ENSECAG00000010621	EXOSC1	69	55.046	Equus_caballus
ENSPREG00000000405	exosc1	93	64.583	ENSEEUG00000005647	EXOSC1	98	64.583	Erinaceus_europaeus
ENSPREG00000000405	exosc1	95	80.814	ENSELUG00000017369	exosc1	100	80.814	Esox_lucius
ENSPREG00000000405	exosc1	93	74.699	ENSFCAG00000040563	EXOSC1	98	74.699	Felis_catus
ENSPREG00000000405	exosc1	93	64.398	ENSFALG00000008450	EXOSC1	98	64.398	Ficedula_albicollis
ENSPREG00000000405	exosc1	93	66.667	ENSFDAG00000000846	EXOSC1	98	66.667	Fukomys_damarensis
ENSPREG00000000405	exosc1	94	82.990	ENSFHEG00000009154	exosc1	100	82.990	Fundulus_heteroclitus
ENSPREG00000000405	exosc1	94	73.711	ENSGMOG00000008993	exosc1	100	73.711	Gadus_morhua
ENSPREG00000000405	exosc1	93	72.892	ENSGALG00000039917	EXOSC1	98	72.892	Gallus_gallus
ENSPREG00000000405	exosc1	100	97.765	ENSGAFG00000010265	exosc1	100	97.765	Gambusia_affinis
ENSPREG00000000405	exosc1	94	73.711	ENSGACG00000018936	exosc1	100	73.711	Gasterosteus_aculeatus
ENSPREG00000000405	exosc1	93	62.304	ENSGAGG00000019192	EXOSC1	98	62.304	Gopherus_agassizii
ENSPREG00000000405	exosc1	93	74.096	ENSGGOG00000003099	EXOSC1	98	74.096	Gorilla_gorilla
ENSPREG00000000405	exosc1	94	76.289	ENSHBUG00000017857	exosc1	100	76.289	Haplochromis_burtoni
ENSPREG00000000405	exosc1	93	66.667	ENSHGLG00000016927	EXOSC1	98	66.667	Heterocephalus_glaber_female
ENSPREG00000000405	exosc1	93	66.667	ENSHGLG00100012208	EXOSC1	98	66.667	Heterocephalus_glaber_male
ENSPREG00000000405	exosc1	94	74.742	ENSHCOG00000019882	exosc1	100	74.742	Hippocampus_comes
ENSPREG00000000405	exosc1	94	72.165	ENSIPUG00000007685	exosc1	100	72.165	Ictalurus_punctatus
ENSPREG00000000405	exosc1	93	66.146	ENSSTOG00000006615	EXOSC1	98	66.146	Ictidomys_tridecemlineatus
ENSPREG00000000405	exosc1	50	52.830	ENSSTOG00000029860	-	88	52.830	Ictidomys_tridecemlineatus
ENSPREG00000000405	exosc1	93	66.146	ENSJJAG00000013311	Exosc1	98	66.146	Jaculus_jaculus
ENSPREG00000000405	exosc1	98	85.876	ENSKMAG00000001202	exosc1	85	85.876	Kryptolebias_marmoratus
ENSPREG00000000405	exosc1	94	76.289	ENSLBEG00000011448	exosc1	100	76.289	Labrus_bergylta
ENSPREG00000000405	exosc1	94	62.500	ENSLOCG00000003776	exosc1	100	62.500	Lepisosteus_oculatus
ENSPREG00000000405	exosc1	93	65.104	ENSLAFG00000015983	EXOSC1	98	65.104	Loxodonta_africana
ENSPREG00000000405	exosc1	93	74.699	ENSMFAG00000001493	EXOSC1	98	74.699	Macaca_fascicularis
ENSPREG00000000405	exosc1	93	74.699	ENSMMUG00000020028	EXOSC1	98	74.699	Macaca_mulatta
ENSPREG00000000405	exosc1	93	74.699	ENSMNEG00000029816	EXOSC1	98	74.699	Macaca_nemestrina
ENSPREG00000000405	exosc1	93	59.896	ENSMLEG00000027643	EXOSC1	98	59.896	Mandrillus_leucophaeus
ENSPREG00000000405	exosc1	94	77.320	ENSMAMG00000012200	exosc1	100	77.320	Mastacembelus_armatus
ENSPREG00000000405	exosc1	94	76.289	ENSMZEG00005007042	exosc1	100	76.289	Maylandia_zebra
ENSPREG00000000405	exosc1	93	74.096	ENSMAUG00000020462	-	98	74.096	Mesocricetus_auratus
ENSPREG00000000405	exosc1	93	74.251	ENSMICG00000007664	EXOSC1	98	74.251	Microcebus_murinus
ENSPREG00000000405	exosc1	93	65.969	ENSMOCG00000006004	-	98	65.969	Microtus_ochrogaster
ENSPREG00000000405	exosc1	92	61.053	ENSMOCG00000017124	-	97	61.053	Microtus_ochrogaster
ENSPREG00000000405	exosc1	94	67.059	ENSMMOG00000021403	exosc1	100	67.059	Mola_mola
ENSPREG00000000405	exosc1	93	65.285	ENSMODG00000004213	EXOSC1	98	65.285	Monodelphis_domestica
ENSPREG00000000405	exosc1	89	76.757	ENSMALG00000007061	exosc1	93	76.757	Monopterus_albus
ENSPREG00000000405	exosc1	93	65.969	MGP_CAROLIEiJ_G0022959	Exosc1	98	65.969	Mus_caroli
ENSPREG00000000405	exosc1	93	65.969	ENSMUSG00000034321	Exosc1	98	65.969	Mus_musculus
ENSPREG00000000405	exosc1	93	65.969	MGP_PahariEiJ_G0014449	Exosc1	98	65.969	Mus_pahari
ENSPREG00000000405	exosc1	93	65.969	MGP_SPRETEiJ_G0023880	Exosc1	98	65.969	Mus_spretus
ENSPREG00000000405	exosc1	93	66.146	ENSMPUG00000017044	EXOSC1	98	66.146	Mustela_putorius_furo
ENSPREG00000000405	exosc1	93	66.146	ENSMLUG00000009228	EXOSC1	98	66.146	Myotis_lucifugus
ENSPREG00000000405	exosc1	93	64.583	ENSNGAG00000022033	Exosc1	98	64.583	Nannospalax_galili
ENSPREG00000000405	exosc1	95	69.591	ENSNBRG00000024007	exosc1	100	69.591	Neolamprologus_brichardi
ENSPREG00000000405	exosc1	93	74.096	ENSNLEG00000013872	EXOSC1	98	74.096	Nomascus_leucogenys
ENSPREG00000000405	exosc1	93	65.625	ENSOPRG00000005065	EXOSC1	98	65.625	Ochotona_princeps
ENSPREG00000000405	exosc1	93	66.667	ENSODEG00000016709	EXOSC1	98	66.667	Octodon_degus
ENSPREG00000000405	exosc1	95	75.897	ENSONIG00000017683	exosc1	100	75.897	Oreochromis_niloticus
ENSPREG00000000405	exosc1	64	85.088	ENSOANG00000006563	EXOSC1	96	83.471	Ornithorhynchus_anatinus
ENSPREG00000000405	exosc1	93	65.803	ENSOCUG00000011898	-	98	65.803	Oryctolagus_cuniculus
ENSPREG00000000405	exosc1	93	61.458	ENSOCUG00000026461	-	98	61.458	Oryctolagus_cuniculus
ENSPREG00000000405	exosc1	94	74.359	ENSORLG00000011595	exosc1	100	74.359	Oryzias_latipes
ENSPREG00000000405	exosc1	94	74.359	ENSORLG00020005831	exosc1	100	74.359	Oryzias_latipes_hni
ENSPREG00000000405	exosc1	94	74.359	ENSORLG00015004317	exosc1	100	74.359	Oryzias_latipes_hsok
ENSPREG00000000405	exosc1	95	68.108	ENSOMEG00000013907	exosc1	100	68.108	Oryzias_melastigma
ENSPREG00000000405	exosc1	93	65.625	ENSOGAG00000016259	EXOSC1	98	65.625	Otolemur_garnettii
ENSPREG00000000405	exosc1	93	66.146	ENSOARG00000010136	EXOSC1	98	66.146	Ovis_aries
ENSPREG00000000405	exosc1	93	59.794	ENSPPAG00000039842	EXOSC1	98	59.794	Pan_paniscus
ENSPREG00000000405	exosc1	93	74.699	ENSPPRG00000023366	EXOSC1	98	74.699	Panthera_pardus
ENSPREG00000000405	exosc1	93	74.699	ENSPTIG00000017701	EXOSC1	98	74.699	Panthera_tigris_altaica
ENSPREG00000000405	exosc1	93	74.699	ENSPTRG00000002808	EXOSC1	98	74.699	Pan_troglodytes
ENSPREG00000000405	exosc1	93	74.699	ENSPANG00000021324	EXOSC1	98	74.699	Papio_anubis
ENSPREG00000000405	exosc1	94	74.227	ENSPKIG00000016037	exosc1	100	74.227	Paramormyrops_kingsleyae
ENSPREG00000000405	exosc1	68	75.207	ENSPSIG00000013571	EXOSC1	98	74.380	Pelodiscus_sinensis
ENSPREG00000000405	exosc1	94	88.166	ENSPMGG00000014002	exosc1	100	88.166	Periophthalmus_magnuspinnatus
ENSPREG00000000405	exosc1	93	65.969	ENSPEMG00000010710	-	98	65.969	Peromyscus_maniculatus_bairdii
ENSPREG00000000405	exosc1	90	60.428	ENSPMAG00000000195	exosc1	95	60.428	Petromyzon_marinus
ENSPREG00000000405	exosc1	93	64.583	ENSPCIG00000002210	EXOSC1	97	64.583	Phascolarctos_cinereus
ENSPREG00000000405	exosc1	100	86.275	ENSPFOG00000006755	exosc1	100	86.275	Poecilia_formosa
ENSPREG00000000405	exosc1	88	98.734	ENSPLAG00000005880	exosc1	98	98.734	Poecilia_latipinna
ENSPREG00000000405	exosc1	100	98.324	ENSPMEG00000015598	exosc1	100	98.324	Poecilia_mexicana
ENSPREG00000000405	exosc1	93	64.583	ENSPPYG00000002531	EXOSC1	98	64.583	Pongo_abelii
ENSPREG00000000405	exosc1	93	66.146	ENSPCAG00000009135	EXOSC1	98	66.146	Procavia_capensis
ENSPREG00000000405	exosc1	93	68.263	ENSPCOG00000027539	EXOSC1	98	68.263	Propithecus_coquereli
ENSPREG00000000405	exosc1	93	66.146	ENSPVAG00000003372	EXOSC1	98	66.146	Pteropus_vampyrus
ENSPREG00000000405	exosc1	95	87.647	ENSPNYG00000021745	exosc1	100	87.647	Pundamilia_nyererei
ENSPREG00000000405	exosc1	93	82.530	ENSPNAG00000001944	exosc1	98	82.530	Pygocentrus_nattereri
ENSPREG00000000405	exosc1	93	65.969	ENSRNOG00000048708	Exosc1	98	65.969	Rattus_norvegicus
ENSPREG00000000405	exosc1	93	74.699	ENSRBIG00000035618	EXOSC1	98	74.699	Rhinopithecus_bieti
ENSPREG00000000405	exosc1	93	74.699	ENSRROG00000032589	EXOSC1	98	74.699	Rhinopithecus_roxellana
ENSPREG00000000405	exosc1	93	75.301	ENSSBOG00000000359	EXOSC1	98	75.301	Saimiri_boliviensis_boliviensis
ENSPREG00000000405	exosc1	68	82.927	ENSSHAG00000018219	EXOSC1	84	82.927	Sarcophilus_harrisii
ENSPREG00000000405	exosc1	93	79.762	ENSSFOG00015016289	-	98	79.762	Scleropages_formosus
ENSPREG00000000405	exosc1	94	72.680	ENSSFOG00015009069	exosc1	100	72.680	Scleropages_formosus
ENSPREG00000000405	exosc1	94	75.773	ENSSMAG00000003721	exosc1	100	75.773	Scophthalmus_maximus
ENSPREG00000000405	exosc1	94	74.742	ENSSDUG00000002993	exosc1	100	74.742	Seriola_dumerili
ENSPREG00000000405	exosc1	94	74.742	ENSSLDG00000025181	exosc1	100	74.742	Seriola_lalandi_dorsalis
ENSPREG00000000405	exosc1	93	64.398	ENSSARG00000000162	EXOSC1	98	64.398	Sorex_araneus
ENSPREG00000000405	exosc1	93	60.733	ENSSPUG00000012263	EXOSC1	98	60.733	Sphenodon_punctatus
ENSPREG00000000405	exosc1	98	69.000	ENSSPAG00000016792	exosc1	86	69.000	Stegastes_partitus
ENSPREG00000000405	exosc1	93	65.969	ENSSSCG00000010518	EXOSC1	89	65.969	Sus_scrofa
ENSPREG00000000405	exosc1	93	64.398	ENSTGUG00000009692	EXOSC1	98	64.398	Taeniopygia_guttata
ENSPREG00000000405	exosc1	92	68.421	ENSTRUG00000007706	exosc1	98	68.421	Takifugu_rubripes
ENSPREG00000000405	exosc1	95	67.172	ENSTNIG00000014079	exosc1	99	67.172	Tetraodon_nigroviridis
ENSPREG00000000405	exosc1	93	64.737	ENSTBEG00000006011	EXOSC1	98	64.737	Tupaia_belangeri
ENSPREG00000000405	exosc1	89	66.304	ENSTTRG00000009887	EXOSC1	100	66.304	Tursiops_truncatus
ENSPREG00000000405	exosc1	93	56.395	ENSUAMG00000010266	EXOSC1	98	56.395	Ursus_americanus
ENSPREG00000000405	exosc1	93	57.485	ENSUMAG00000022002	EXOSC1	98	57.485	Ursus_maritimus
ENSPREG00000000405	exosc1	93	66.492	ENSVVUG00000023192	EXOSC1	62	66.492	Vulpes_vulpes
ENSPREG00000000405	exosc1	94	63.212	ENSXETG00000003434	exosc1	99	63.212	Xenopus_tropicalis
ENSPREG00000000405	exosc1	68	99.174	ENSXCOG00000014499	exosc1	93	99.174	Xiphophorus_couchianus
ENSPREG00000000405	exosc1	100	98.324	ENSXMAG00000023382	exosc1	100	98.324	Xiphophorus_maculatus