EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000001047 (Gene tree)
Gene ID: 103466231
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA phosphodiesterase-like
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 11606 bases
Position: chrLG6:19220613-19232218
Accession: 103466231
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000001460	HVSL	PF09749.9	1.4e-61	1	1
ENSPREP00000001428	HVSL	PF09749.9	7.9e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000001469	-	609	-	ENSPREP00000001428	202 (aa)	-	-
ENSPRET00000001501	-	2036	XM_008411677	ENSPREP00000001460	247 (aa)	XP_008409899	UPI0004A43837

Gene Model

Click here to download ENSPREG00000001047's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000001047's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000001047	usb1	79	53.061	ENSG00000103005	USB1	86	50.633	Homo_sapiens
ENSPREG00000001047	usb1	98	72.691	ENSAPOG00000011942	usb1	88	71.888	Acanthochromis_polyacanthus
ENSPREG00000001047	usb1	81	53.500	ENSAMEG00000017205	USB1	86	50.000	Ailuropoda_melanoleuca
ENSPREG00000001047	usb1	83	71.220	ENSACIG00000012234	usb1	88	65.714	Amphilophus_citrinellus
ENSPREG00000001047	usb1	99	74.104	ENSAOCG00000014831	usb1	88	73.307	Amphiprion_ocellaris
ENSPREG00000001047	usb1	99	73.307	ENSAPEG00000000296	usb1	88	72.510	Amphiprion_percula
ENSPREG00000001047	usb1	99	73.092	ENSATEG00000009348	usb1	88	71.888	Anabas_testudineus
ENSPREG00000001047	usb1	77	57.812	ENSAPLG00000002756	USB1	85	56.771	Anas_platyrhynchos
ENSPREG00000001047	usb1	78	52.821	ENSACAG00000015481	USB1	85	52.308	Anolis_carolinensis
ENSPREG00000001047	usb1	79	52.551	ENSANAG00000035640	USB1	92	44.521	Aotus_nancymaae
ENSPREG00000001047	usb1	89	72.273	ENSACLG00000020586	usb1	88	68.651	Astatotilapia_calliptera
ENSPREG00000001047	usb1	78	64.948	ENSAMXG00000040146	usb1	85	54.753	Astyanax_mexicanus
ENSPREG00000001047	usb1	98	49.383	ENSBTAG00000015758	USB1	85	48.560	Bos_taurus
ENSPREG00000001047	usb1	79	53.571	ENSCJAG00000011733	USB1	97	44.444	Callithrix_jacchus
ENSPREG00000001047	usb1	98	47.541	ENSCAFG00000008556	USB1	63	48.980	Canis_familiaris
ENSPREG00000001047	usb1	98	49.174	ENSCAFG00020009263	USB1	85	49.174	Canis_lupus_dingo
ENSPREG00000001047	usb1	98	48.971	ENSCHIG00000024290	USB1	85	48.971	Capra_hircus
ENSPREG00000001047	usb1	85	50.000	ENSTSYG00000006997	USB1	92	43.827	Carlito_syrichta
ENSPREG00000001047	usb1	77	42.932	ENSCAPG00000009057	USB1	78	42.408	Cavia_aperea
ENSPREG00000001047	usb1	98	49.174	ENSCPOG00000014325	USB1	85	48.760	Cavia_porcellus
ENSPREG00000001047	usb1	79	53.061	ENSCCAG00000022132	USB1	89	45.390	Cebus_capucinus
ENSPREG00000001047	usb1	79	53.571	ENSCATG00000032174	USB1	92	43.558	Cercocebus_atys
ENSPREG00000001047	usb1	56	53.957	ENSCLAG00000007363	USB1	70	55.285	Chinchilla_lanigera
ENSPREG00000001047	usb1	79	53.571	ENSCSAG00000004783	USB1	86	48.361	Chlorocebus_sabaeus
ENSPREG00000001047	usb1	78	56.701	ENSCPBG00000026943	USB1	86	52.227	Chrysemys_picta_bellii
ENSPREG00000001047	usb1	74	36.269	ENSCING00000011490	-	80	31.950	Ciona_intestinalis
ENSPREG00000001047	usb1	79	35.294	ENSCSAVG00000000894	-	79	32.520	Ciona_savignyi
ENSPREG00000001047	usb1	79	53.846	ENSCANG00000037135	USB1	94	46.479	Colobus_angolensis_palliatus
ENSPREG00000001047	usb1	98	51.240	ENSCGRG00001011243	USB1	85	51.240	Cricetulus_griseus_chok1gshd
ENSPREG00000001047	usb1	98	51.240	ENSCGRG00000013252	USB1	85	51.240	Cricetulus_griseus_crigri
ENSPREG00000001047	usb1	99	69.388	ENSCSEG00000013881	usb1	88	68.163	Cynoglossus_semilaevis
ENSPREG00000001047	usb1	78	82.564	ENSCVAG00000009252	usb1	84	82.564	Cyprinodon_variegatus
ENSPREG00000001047	usb1	87	57.674	ENSDARG00000003841	usb1	88	54.183	Danio_rerio
ENSPREG00000001047	usb1	98	47.934	ENSDORG00000001888	Usb1	86	48.560	Dipodomys_ordii
ENSPREG00000001047	usb1	73	44.505	FBgn0037713	CG16790	65	45.562	Drosophila_melanogaster
ENSPREG00000001047	usb1	87	47.907	ENSETEG00000019682	USB1	75	46.977	Echinops_telfairi
ENSPREG00000001047	usb1	96	43.038	ENSEBUG00000005889	usb1	76	42.793	Eptatretus_burgeri
ENSPREG00000001047	usb1	98	48.361	ENSEASG00005005484	USB1	86	47.541	Equus_asinus_asinus
ENSPREG00000001047	usb1	98	48.361	ENSECAG00000019493	USB1	79	47.541	Equus_caballus
ENSPREG00000001047	usb1	89	60.633	ENSELUG00000010974	usb1	88	59.184	Esox_lucius
ENSPREG00000001047	usb1	81	51.485	ENSFCAG00000002693	USB1	86	47.984	Felis_catus
ENSPREG00000001047	usb1	78	55.385	ENSFALG00000006876	USB1	85	50.000	Ficedula_albicollis
ENSPREG00000001047	usb1	98	47.521	ENSFDAG00000010052	USB1	85	47.107	Fukomys_damarensis
ENSPREG00000001047	usb1	99	84.082	ENSFHEG00000012334	usb1	98	84.082	Fundulus_heteroclitus
ENSPREG00000001047	usb1	77	70.681	ENSGMOG00000004228	usb1	85	70.157	Gadus_morhua
ENSPREG00000001047	usb1	98	51.653	ENSGALG00000035604	USB1	85	50.826	Gallus_gallus
ENSPREG00000001047	usb1	99	94.672	ENSGAFG00000021890	usb1	88	94.672	Gambusia_affinis
ENSPREG00000001047	usb1	98	68.724	ENSGACG00000003257	usb1	87	67.490	Gasterosteus_aculeatus
ENSPREG00000001047	usb1	98	53.279	ENSGAGG00000022572	USB1	86	53.279	Gopherus_agassizii
ENSPREG00000001047	usb1	79	53.571	ENSGGOG00000017147	USB1	86	47.755	Gorilla_gorilla
ENSPREG00000001047	usb1	89	72.273	ENSHBUG00000009823	usb1	88	68.924	Haplochromis_burtoni
ENSPREG00000001047	usb1	98	48.347	ENSHGLG00000016078	USB1	84	47.521	Heterocephalus_glaber_female
ENSPREG00000001047	usb1	98	48.347	ENSHGLG00100005562	USB1	84	47.521	Heterocephalus_glaber_male
ENSPREG00000001047	usb1	76	74.332	ENSHCOG00000015633	usb1	87	63.525	Hippocampus_comes
ENSPREG00000001047	usb1	99	55.642	ENSIPUG00000008601	usb1	89	55.253	Ictalurus_punctatus
ENSPREG00000001047	usb1	98	49.587	ENSSTOG00000007548	USB1	86	49.383	Ictidomys_tridecemlineatus
ENSPREG00000001047	usb1	98	49.174	ENSJJAG00000021859	Usb1	85	48.760	Jaculus_jaculus
ENSPREG00000001047	usb1	93	76.419	ENSKMAG00000007200	usb1	88	73.228	Kryptolebias_marmoratus
ENSPREG00000001047	usb1	89	68.018	ENSLBEG00000008452	usb1	83	65.587	Labrus_bergylta
ENSPREG00000001047	usb1	89	53.363	ENSLACG00000000105	USB1	86	51.394	Latimeria_chalumnae
ENSPREG00000001047	usb1	99	48.214	ENSLOCG00000000465	usb1	89	52.381	Lepisosteus_oculatus
ENSPREG00000001047	usb1	98	38.583	ENSLAFG00000002267	USB1	86	37.209	Loxodonta_africana
ENSPREG00000001047	usb1	79	53.571	ENSMFAG00000003926	USB1	92	43.558	Macaca_fascicularis
ENSPREG00000001047	usb1	79	53.571	ENSMMUG00000022669	USB1	91	46.429	Macaca_mulatta
ENSPREG00000001047	usb1	79	53.571	ENSMNEG00000042487	USB1	92	43.558	Macaca_nemestrina
ENSPREG00000001047	usb1	79	53.571	ENSMLEG00000028756	USB1	92	43.558	Mandrillus_leucophaeus
ENSPREG00000001047	usb1	99	74.494	ENSMAMG00000015092	usb1	88	72.874	Mastacembelus_armatus
ENSPREG00000001047	usb1	89	72.273	ENSMZEG00005010008	usb1	88	68.924	Maylandia_zebra
ENSPREG00000001047	usb1	98	50.000	ENSMAUG00000007832	Usb1	85	50.000	Mesocricetus_auratus
ENSPREG00000001047	usb1	78	54.124	ENSMICG00000004900	USB1	91	46.154	Microcebus_murinus
ENSPREG00000001047	usb1	98	51.653	ENSMOCG00000022647	Usb1	85	51.653	Microtus_ochrogaster
ENSPREG00000001047	usb1	77	76.440	ENSMMOG00000000490	usb1	86	64.876	Mola_mola
ENSPREG00000001047	usb1	74	55.978	ENSMODG00000014067	USB1	86	50.607	Monodelphis_domestica
ENSPREG00000001047	usb1	87	74.766	ENSMALG00000005930	usb1	88	69.355	Monopterus_albus
ENSPREG00000001047	usb1	98	50.413	MGP_CAROLIEiJ_G0031421	Usb1	88	53.000	Mus_caroli
ENSPREG00000001047	usb1	98	50.000	ENSMUSG00000031792	Usb1	88	53.000	Mus_musculus
ENSPREG00000001047	usb1	78	55.670	MGP_PahariEiJ_G0023019	Usb1	90	54.286	Mus_pahari
ENSPREG00000001047	usb1	98	50.413	MGP_SPRETEiJ_G0032540	Usb1	85	49.587	Mus_spretus
ENSPREG00000001047	usb1	81	52.000	ENSMPUG00000004684	USB1	82	47.934	Mustela_putorius_furo
ENSPREG00000001047	usb1	78	54.639	ENSMLUG00000007400	USB1	84	54.639	Myotis_lucifugus
ENSPREG00000001047	usb1	98	49.402	ENSNGAG00000009703	Usb1	86	50.000	Nannospalax_galili
ENSPREG00000001047	usb1	89	65.000	ENSNBRG00000008747	usb1	84	71.429	Neolamprologus_brichardi
ENSPREG00000001047	usb1	79	53.571	ENSNLEG00000003340	USB1	91	47.755	Nomascus_leucogenys
ENSPREG00000001047	usb1	53	53.846	ENSOPRG00000011803	USB1	56	52.308	Ochotona_princeps
ENSPREG00000001047	usb1	98	50.206	ENSODEG00000016214	USB1	85	49.794	Octodon_degus
ENSPREG00000001047	usb1	99	70.800	ENSONIG00000011063	usb1	88	69.600	Oreochromis_niloticus
ENSPREG00000001047	usb1	77	53.927	ENSOANG00000012118	USB1	80	53.927	Ornithorhynchus_anatinus
ENSPREG00000001047	usb1	99	72.131	ENSORLG00000012479	usb1	88	70.902	Oryzias_latipes
ENSPREG00000001047	usb1	88	73.394	ENSORLG00020018671	usb1	88	68.852	Oryzias_latipes_hni
ENSPREG00000001047	usb1	92	72.247	ENSORLG00015009679	usb1	88	70.492	Oryzias_latipes_hsok
ENSPREG00000001047	usb1	99	71.721	ENSOMEG00000012930	usb1	88	70.082	Oryzias_melastigma
ENSPREG00000001047	usb1	85	48.113	ENSOGAG00000003273	USB1	84	45.267	Otolemur_garnettii
ENSPREG00000001047	usb1	86	51.402	ENSOARG00000001107	USB1	82	51.402	Ovis_aries
ENSPREG00000001047	usb1	79	53.061	ENSPPAG00000042137	USB1	92	43.836	Pan_paniscus
ENSPREG00000001047	usb1	81	50.990	ENSPPRG00000024797	USB1	97	43.226	Panthera_pardus
ENSPREG00000001047	usb1	81	50.495	ENSPTIG00000007506	USB1	97	42.581	Panthera_tigris_altaica
ENSPREG00000001047	usb1	74	54.645	ENSPTRG00000008172	USB1	79	55.882	Pan_troglodytes
ENSPREG00000001047	usb1	79	53.571	ENSPANG00000025138	USB1	92	43.558	Papio_anubis
ENSPREG00000001047	usb1	81	67.500	ENSPKIG00000015109	usb1	89	55.639	Paramormyrops_kingsleyae
ENSPREG00000001047	usb1	78	46.626	ENSPSIG00000004305	USB1	72	51.807	Pelodiscus_sinensis
ENSPREG00000001047	usb1	77	68.421	ENSPMGG00000017725	usb1	86	58.264	Periophthalmus_magnuspinnatus
ENSPREG00000001047	usb1	98	49.187	ENSPEMG00000016183	Usb1	86	49.187	Peromyscus_maniculatus_bairdii
ENSPREG00000001047	usb1	77	54.688	ENSPMAG00000000462	usb1	81	54.688	Petromyzon_marinus
ENSPREG00000001047	usb1	99	97.131	ENSPFOG00000011130	usb1	88	97.131	Poecilia_formosa
ENSPREG00000001047	usb1	99	96.311	ENSPLAG00000009820	usb1	88	96.311	Poecilia_latipinna
ENSPREG00000001047	usb1	99	97.131	ENSPMEG00000006402	usb1	88	97.131	Poecilia_mexicana
ENSPREG00000001047	usb1	78	50.769	ENSPPYG00000007401	USB1	90	45.492	Pongo_abelii
ENSPREG00000001047	usb1	78	53.093	ENSPCOG00000022612	USB1	92	45.062	Propithecus_coquereli
ENSPREG00000001047	usb1	98	47.600	ENSPVAG00000004613	USB1	88	46.800	Pteropus_vampyrus
ENSPREG00000001047	usb1	99	67.729	ENSPNYG00000022262	usb1	88	68.526	Pundamilia_nyererei
ENSPREG00000001047	usb1	78	65.285	ENSPNAG00000011736	usb1	89	53.232	Pygocentrus_nattereri
ENSPREG00000001047	usb1	98	50.413	ENSRNOG00000013216	Usb1	85	49.587	Rattus_norvegicus
ENSPREG00000001047	usb1	79	50.000	ENSRBIG00000044466	USB1	92	45.062	Rhinopithecus_bieti
ENSPREG00000001047	usb1	79	53.571	ENSRROG00000029211	USB1	92	45.062	Rhinopithecus_roxellana
ENSPREG00000001047	usb1	79	53.571	ENSSBOG00000029362	USB1	92	43.210	Saimiri_boliviensis_boliviensis
ENSPREG00000001047	usb1	74	53.261	ENSSHAG00000006993	USB1	76	53.093	Sarcophilus_harrisii
ENSPREG00000001047	usb1	78	66.321	ENSSFOG00015023663	usb1	81	58.140	Scleropages_formosus
ENSPREG00000001047	usb1	98	67.433	ENSSMAG00000015834	usb1	88	66.667	Scophthalmus_maximus
ENSPREG00000001047	usb1	77	81.579	ENSSDUG00000002949	usb1	87	68.595	Seriola_dumerili
ENSPREG00000001047	usb1	98	73.577	ENSSLDG00000014174	usb1	88	73.171	Seriola_lalandi_dorsalis
ENSPREG00000001047	usb1	74	57.923	ENSSPUG00000006741	USB1	79	59.412	Sphenodon_punctatus
ENSPREG00000001047	usb1	99	72.619	ENSSPAG00000007484	usb1	88	71.429	Stegastes_partitus
ENSPREG00000001047	usb1	98	49.794	ENSSSCG00000002807	USB1	85	49.794	Sus_scrofa
ENSPREG00000001047	usb1	70	58.857	ENSTGUG00000004792	USB1	66	60.119	Taeniopygia_guttata
ENSPREG00000001047	usb1	98	68.595	ENSTRUG00000021069	usb1	87	67.355	Takifugu_rubripes
ENSPREG00000001047	usb1	98	57.025	ENSTNIG00000000626	usb1	84	55.372	Tetraodon_nigroviridis
ENSPREG00000001047	usb1	77	37.173	ENSTBEG00000001507	USB1	82	36.126	Tupaia_belangeri
ENSPREG00000001047	usb1	78	54.639	ENSUAMG00000016823	USB1	86	48.560	Ursus_americanus
ENSPREG00000001047	usb1	73	55.249	ENSUMAG00000021369	USB1	77	57.576	Ursus_maritimus
ENSPREG00000001047	usb1	98	47.521	ENSVVUG00000023700	USB1	75	53.608	Vulpes_vulpes
ENSPREG00000001047	usb1	88	44.845	ENSXETG00000013795	usb1	85	53.182	Xenopus_tropicalis
ENSPREG00000001047	usb1	99	94.309	ENSXMAG00000024687	usb1	81	94.309	Xiphophorus_maculatus