EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPREG00000001589 (Gene tree)
Gene ID
103458629
Gene Symbol
pabpc4
Alias
-
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Poecilia_reticulata
Status
putative
Strand
Minus strand
Length
11685 bases
Position
chrLG22:13784776-13796460
Accession
103458629
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPREP00000002246PABPPF00658.185.6e-3111
ENSPREP00000002212PABPPF00658.185.6e-3111
ENSPREP00000002187PABPPF00658.186.4e-3111
ENSPREP00000002187RRM_5PF13893.61.6e-0911
ENSPREP00000002246RRM_5PF13893.61.3e-0811
ENSPREP00000002212RRM_5PF13893.68.1e-0811
ENSPREP00000002187RRM_1PF00076.221.5e-9014
ENSPREP00000002187RRM_1PF00076.221.5e-9024
ENSPREP00000002187RRM_1PF00076.221.5e-9034
ENSPREP00000002187RRM_1PF00076.221.5e-9044
ENSPREP00000002246RRM_1PF00076.228.9e-7914
ENSPREP00000002246RRM_1PF00076.228.9e-7924
ENSPREP00000002246RRM_1PF00076.228.9e-7934
ENSPREP00000002246RRM_1PF00076.228.9e-7944
ENSPREP00000002212RRM_1PF00076.227.5e-6913
ENSPREP00000002212RRM_1PF00076.227.5e-6923
ENSPREP00000002212RRM_1PF00076.227.5e-6933
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPRET00000002258-3374-ENSPREP00000002212584 (aa)--
ENSPRET00000002233-3466XM_008399584ENSPREP00000002187626 (aa)XP_008397806UPI0004A25049
ENSPRET00000002292-1776-ENSPREP00000002246591 (aa)--
Gene Model
Click here to download ENSPREG00000001589's gene model file
Pathways
Pathway IDPathway NameSource
pret03013RNA transportKEGG
pret03015mRNA surveillance pathwayKEGG
pret03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000001589's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPREG00000001589pabpc45936.709ENSPREG00000021088-5136.709
ENSPREG00000001589pabpc46677.590ENSPREG00000015886pabpc1l10077.590
ENSPREG00000001589pabpc46034.940ENSPREG00000018937elavl48434.940
ENSPREG00000001589pabpc46136.145ENSPREG00000006971elavl39236.145
ENSPREG00000001589pabpc45136.364ENSPREG00000022185-5936.364
ENSPREG00000001589pabpc45936.111ENSPREG00000005877-9631.148
ENSPREG00000001589pabpc45838.636ENSPREG00000018002-5738.636
ENSPREG00000001589pabpc46532.000ENSPREG00000000978rbm197332.000
ENSPREG00000001589pabpc45337.500ENSPREG00000008235celf5a5637.500
ENSPREG00000001589pabpc48491.304ENSPREG00000019595pabpc1a9791.304
ENSPREG00000001589pabpc46838.636ENSPREG00000005911si:dkey-205h23.28735.616
ENSPREG00000001589pabpc46036.145ENSPREG00000017160ELAVL28536.145
ENSPREG00000001589pabpc45934.737ENSPREG00000015038rbms2a5533.981
ENSPREG00000001589pabpc49976.160ENSPREG00000010911pabpc1b9975.748
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPREG00000001589pabpc410084.848ENSG00000090621PABPC49897.015Homo_sapiens
ENSPREG00000001589pabpc49996.440ENSAPOG00000001161pabpc49996.006Acanthochromis_polyacanthus
ENSPREG00000001589pabpc49849.678ENSAMEG00000015083-9948.397Ailuropoda_melanoleuca
ENSPREG00000001589pabpc410083.220ENSAMEG00000011535-10083.220Ailuropoda_melanoleuca
ENSPREG00000001589pabpc410095.880ENSACIG00000023343pabpc49995.880Amphilophus_citrinellus
ENSPREG00000001589pabpc49996.117ENSAOCG00000021529pabpc49995.687Amphiprion_ocellaris
ENSPREG00000001589pabpc49996.117ENSAPEG00000019196pabpc49995.687Amphiprion_percula
ENSPREG00000001589pabpc49995.315ENSATEG00000007402pabpc49995.056Anabas_testudineus
ENSPREG00000001589pabpc49985.827ENSAPLG00000009729-10085.197Anas_platyrhynchos
ENSPREG00000001589pabpc49885.284ENSACAG00000002544PABPC410084.574Anolis_carolinensis
ENSPREG00000001589pabpc410083.220ENSANAG00000025079PABPC410083.220Aotus_nancymaae
ENSPREG00000001589pabpc410096.326ENSACLG00000019558pabpc49996.326Astatotilapia_calliptera
ENSPREG00000001589pabpc49986.529ENSAMXG00000018779pabpc49986.529Astyanax_mexicanus
ENSPREG00000001589pabpc410081.957ENSBTAG00000017125PABPC410081.193Bos_taurus
ENSPREG00000001589pabpc45883.832ENSBTAG00000048536-9383.832Bos_taurus
ENSPREG00000001589pabpc47480.804ENSCJAG00000045953-9075.620Callithrix_jacchus
ENSPREG00000001589pabpc410083.220ENSCJAG00000002512-10083.220Callithrix_jacchus
ENSPREG00000001589pabpc410083.333ENSCAFG00000003081PABPC410083.255Canis_familiaris
ENSPREG00000001589pabpc410083.447ENSCAFG00020004161PABPC410083.447Canis_lupus_dingo
ENSPREG00000001589pabpc410065.224ENSCHIG00000023385-10064.760Capra_hircus
ENSPREG00000001589pabpc410080.240ENSCHIG00000019398-10083.220Capra_hircus
ENSPREG00000001589pabpc410083.725ENSTSYG00000006532PABPC410083.099Carlito_syrichta
ENSPREG00000001589pabpc49983.562ENSCAPG00000015984PABPC410083.371Cavia_aperea
ENSPREG00000001589pabpc410083.673ENSCPOG00000009552PABPC410083.673Cavia_porcellus
ENSPREG00000001589pabpc410083.220ENSCCAG00000037306PABPC410083.220Cebus_capucinus
ENSPREG00000001589pabpc410083.447ENSCATG00000042164PABPC410083.447Cercocebus_atys
ENSPREG00000001589pabpc410083.447ENSCLAG00000011899PABPC410083.447Chinchilla_lanigera
ENSPREG00000001589pabpc410083.447ENSCSAG00000001135PABPC410083.447Chlorocebus_sabaeus
ENSPREG00000001589pabpc48789.211ENSCHOG00000005327PABPC47989.757Choloepus_hoffmanni
ENSPREG00000001589pabpc49986.457ENSCPBG00000001038PABPC410085.827Chrysemys_picta_bellii
ENSPREG00000001589pabpc49983.796ENSCANG00000034177PABPC410083.796Colobus_angolensis_palliatus
ENSPREG00000001589pabpc49885.041ENSCGRG00001018166Pabpc410083.917Cricetulus_griseus_chok1gshd
ENSPREG00000001589pabpc49785.314ENSCGRG00000009777Pabpc410084.168Cricetulus_griseus_crigri
ENSPREG00000001589pabpc410095.215ENSCSEG00000000130pabpc410095.215Cynoglossus_semilaevis
ENSPREG00000001589pabpc49998.864ENSCVAG00000019246pabpc410098.864Cyprinodon_variegatus
ENSPREG00000001589pabpc49892.344ENSDARG00000059259pabpc410092.066Danio_rerio
ENSPREG00000001589pabpc49982.312ENSDNOG00000018444-10082.042Dasypus_novemcinctus
ENSPREG00000001589pabpc410081.985ENSDORG00000011581Pabpc410081.317Dipodomys_ordii
ENSPREG00000001589pabpc410090.625ENSETEG00000018453-8490.625Echinops_telfairi
ENSPREG00000001589pabpc49154.380ENSETEG00000009172-9952.632Echinops_telfairi
ENSPREG00000001589pabpc49976.032ENSEBUG00000000992pabpc410075.714Eptatretus_burgeri
ENSPREG00000001589pabpc49777.398ENSEBUG00000013782pabpc49976.752Eptatretus_burgeri
ENSPREG00000001589pabpc410083.447ENSEASG00005014119PABPC410083.447Equus_asinus_asinus
ENSPREG00000001589pabpc410083.447ENSECAG00000009396PABPC410083.447Equus_caballus
ENSPREG00000001589pabpc49778.988ENSEEUG00000002962PABPC410077.844Erinaceus_europaeus
ENSPREG00000001589pabpc49892.834ENSELUG00000003195pabpc410092.175Esox_lucius
ENSPREG00000001589pabpc410083.447ENSFCAG00000015254-10083.447Felis_catus
ENSPREG00000001589pabpc49985.984ENSFALG00000000543PABPC410085.354Ficedula_albicollis
ENSPREG00000001589pabpc49552.654ENSFDAG00000010581-9950.775Fukomys_damarensis
ENSPREG00000001589pabpc410083.447ENSFDAG00000020016-10083.447Fukomys_damarensis
ENSPREG00000001589pabpc410098.882ENSFHEG00000007548pabpc410098.882Fundulus_heteroclitus
ENSPREG00000001589pabpc410090.424ENSGMOG00000019025pabpc49990.424Gadus_morhua
ENSPREG00000001589pabpc49986.614ENSGALG00000003800PABPC410085.984Gallus_gallus
ENSPREG00000001589pabpc410098.092ENSGAFG00000018195pabpc410098.092Gambusia_affinis
ENSPREG00000001589pabpc410093.291ENSGACG00000007179pabpc49993.291Gasterosteus_aculeatus
ENSPREG00000001589pabpc49986.614ENSGAGG00000001888PABPC410085.984Gopherus_agassizii
ENSPREG00000001589pabpc410083.220ENSGGOG00000004002PABPC410083.220Gorilla_gorilla
ENSPREG00000001589pabpc410096.166ENSHBUG00000020206pabpc49996.166Haplochromis_burtoni
ENSPREG00000001589pabpc410083.447ENSHGLG00000011162PABPC410083.447Heterocephalus_glaber_female
ENSPREG00000001589pabpc410083.075ENSHGLG00100001580PABPC410082.942Heterocephalus_glaber_male
ENSPREG00000001589pabpc410093.930ENSHCOG00000012694pabpc49994.888Hippocampus_comes
ENSPREG00000001589pabpc49791.613ENSIPUG00000016620pabpc410090.852Ictalurus_punctatus
ENSPREG00000001589pabpc410084.848ENSSTOG00000010416PABPC410084.211Ictidomys_tridecemlineatus
ENSPREG00000001589pabpc410080.982ENSJJAG00000007781Pabpc410080.092Jaculus_jaculus
ENSPREG00000001589pabpc410095.056ENSKMAG00000013597pabpc410095.056Kryptolebias_marmoratus
ENSPREG00000001589pabpc410094.762ENSLBEG00000013654pabpc410094.762Labrus_bergylta
ENSPREG00000001589pabpc49987.107ENSLACG00000011907PABPC410086.635Latimeria_chalumnae
ENSPREG00000001589pabpc49991.496ENSLOCG00000001877pabpc410091.496Lepisosteus_oculatus
ENSPREG00000001589pabpc410085.008ENSLAFG00000000151PABPC410084.370Loxodonta_africana
ENSPREG00000001589pabpc410083.447ENSMFAG00000041481PABPC410083.447Macaca_fascicularis
ENSPREG00000001589pabpc410083.447ENSMMUG00000007497PABPC410083.447Macaca_mulatta
ENSPREG00000001589pabpc410083.447ENSMNEG00000043054PABPC410083.447Macaca_nemestrina
ENSPREG00000001589pabpc410083.447ENSMLEG00000040716PABPC410083.447Mandrillus_leucophaeus
ENSPREG00000001589pabpc49996.117ENSMAMG00000010025pabpc49995.527Mastacembelus_armatus
ENSPREG00000001589pabpc410096.166ENSMZEG00005006141pabpc49996.166Maylandia_zebra
ENSPREG00000001589pabpc49883.108ENSMGAG00000005408PABPC410082.432Meleagris_gallopavo
ENSPREG00000001589pabpc45879.532ENSMAUG00000004089-9279.532Mesocricetus_auratus
ENSPREG00000001589pabpc47279.524ENSMAUG00000001295-9778.571Mesocricetus_auratus
ENSPREG00000001589pabpc47790.625ENSMAUG00000019763-8487.156Mesocricetus_auratus
ENSPREG00000001589pabpc48884.505ENSMICG00000016633-10084.144Microcebus_murinus
ENSPREG00000001589pabpc49975.492ENSMICG00000036729-10074.240Microcebus_murinus
ENSPREG00000001589pabpc49884.006ENSMOCG00000006763Pabpc410083.447Microtus_ochrogaster
ENSPREG00000001589pabpc410091.693ENSMMOG00000002363pabpc49991.214Mola_mola
ENSPREG00000001589pabpc45083.673ENSMODG00000019847-6783.673Monodelphis_domestica
ENSPREG00000001589pabpc49783.667ENSMODG00000017657-10082.451Monodelphis_domestica
ENSPREG00000001589pabpc46071.467ENSMODG00000018051-9671.467Monodelphis_domestica
ENSPREG00000001589pabpc410095.382ENSMALG00000011017pabpc49995.382Monopterus_albus
ENSPREG00000001589pabpc410079.641MGP_CAROLIEiJ_G0026435-10095.745Mus_caroli
ENSPREG00000001589pabpc49972.902MGP_CAROLIEiJ_G0024864-10073.451Mus_caroli
ENSPREG00000001589pabpc410084.848ENSMUSG00000011257Pabpc410094.048Mus_musculus
ENSPREG00000001589pabpc49980.121MGP_PahariEiJ_G0028765Pabpc410096.454Mus_pahari
ENSPREG00000001589pabpc49283.200MGP_SPRETEiJ_G0027415Pabpc410096.454Mus_spretus
ENSPREG00000001589pabpc410083.447ENSMPUG00000014414-10083.447Mustela_putorius_furo
ENSPREG00000001589pabpc49546.129ENSMPUG00000006836-10045.545Mustela_putorius_furo
ENSPREG00000001589pabpc410084.689ENSMLUG00000012068PABPC410084.051Myotis_lucifugus
ENSPREG00000001589pabpc410085.008ENSNGAG00000018292Pabpc410084.370Nannospalax_galili
ENSPREG00000001589pabpc46598.795ENSNBRG00000010047-7298.795Neolamprologus_brichardi
ENSPREG00000001589pabpc46098.077ENSNBRG00000009708pabpc49898.077Neolamprologus_brichardi
ENSPREG00000001589pabpc410083.333ENSNLEG00000011928PABPC410083.099Nomascus_leucogenys
ENSPREG00000001589pabpc48593.651ENSOPRG00000011984PABPC48693.651Ochotona_princeps
ENSPREG00000001589pabpc49974.066ENSODEG00000017434-10073.029Octodon_degus
ENSPREG00000001589pabpc45582.143ENSODEG00000013457-10082.143Octodon_degus
ENSPREG00000001589pabpc410083.220ENSODEG00000006592-10083.220Octodon_degus
ENSPREG00000001589pabpc410096.166ENSONIG00000008176pabpc49996.166Oreochromis_niloticus
ENSPREG00000001589pabpc49986.299ENSOANG00000010001PABPC410085.669Ornithorhynchus_anatinus
ENSPREG00000001589pabpc49583.220ENSOCUG00000000562PABPC48883.220Oryctolagus_cuniculus
ENSPREG00000001589pabpc49997.531ENSORLG00000017479pabpc49997.531Oryzias_latipes
ENSPREG00000001589pabpc49997.531ENSORLG00020018644pabpc49997.531Oryzias_latipes_hni
ENSPREG00000001589pabpc49997.531ENSORLG00015015042pabpc49997.531Oryzias_latipes_hsok
ENSPREG00000001589pabpc49996.117ENSOMEG00000014410pabpc49995.527Oryzias_melastigma
ENSPREG00000001589pabpc410081.527ENSOGAG00000004067PABPC410081.098Otolemur_garnettii
ENSPREG00000001589pabpc410080.240ENSOARG00000020060PABPC410083.220Ovis_aries
ENSPREG00000001589pabpc410083.220ENSPPAG00000043625PABPC410083.220Pan_paniscus
ENSPREG00000001589pabpc410083.447ENSPPRG00000024727PABPC410083.447Panthera_pardus
ENSPREG00000001589pabpc410083.447ENSPTIG00000005829PABPC410083.447Panthera_tigris_altaica
ENSPREG00000001589pabpc410083.220ENSPTRG00000000573PABPC410083.220Pan_troglodytes
ENSPREG00000001589pabpc410083.333ENSPANG00000009484PABPC410083.447Papio_anubis
ENSPREG00000001589pabpc49990.709ENSPKIG00000025356pabpc49990.820Paramormyrops_kingsleyae
ENSPREG00000001589pabpc49986.929ENSPSIG00000016892PABPC410086.299Pelodiscus_sinensis
ENSPREG00000001589pabpc410090.575ENSPMGG00000009073pabpc49989.776Periophthalmus_magnuspinnatus
ENSPREG00000001589pabpc410079.938ENSPEMG00000024193-10079.627Peromyscus_maniculatus_bairdii
ENSPREG00000001589pabpc410082.993ENSPEMG00000023569-10082.993Peromyscus_maniculatus_bairdii
ENSPREG00000001589pabpc48874.913ENSPMAG00000002836pabpc410075.784Petromyzon_marinus
ENSPREG00000001589pabpc49674.580ENSPMAG00000007885pabpc49972.951Petromyzon_marinus
ENSPREG00000001589pabpc49787.640ENSPCIG00000020674PABPC410095.146Phascolarctos_cinereus
ENSPREG00000001589pabpc410099.042ENSPFOG00000002682pabpc410099.042Poecilia_formosa
ENSPREG00000001589pabpc410099.201ENSPLAG00000010112pabpc410099.201Poecilia_latipinna
ENSPREG00000001589pabpc410099.042ENSPMEG00000019739pabpc410099.042Poecilia_mexicana
ENSPREG00000001589pabpc410083.220ENSPPYG00000001506PABPC410083.220Pongo_abelii
ENSPREG00000001589pabpc410075.599ENSPCAG00000003341PABPC410082.540Procavia_capensis
ENSPREG00000001589pabpc410083.204ENSPCOG00000023725-10083.447Propithecus_coquereli
ENSPREG00000001589pabpc49968.772ENSPCOG00000025882-9969.444Propithecus_coquereli
ENSPREG00000001589pabpc49882.667ENSPVAG00000002187PABPC410082.667Pteropus_vampyrus
ENSPREG00000001589pabpc410096.326ENSPNYG00000006134pabpc49996.326Pundamilia_nyererei
ENSPREG00000001589pabpc410093.196ENSPNAG00000024355pabpc410093.196Pygocentrus_nattereri
ENSPREG00000001589pabpc410081.832ENSRNOG00000015642Pabpc410081.164Rattus_norvegicus
ENSPREG00000001589pabpc410079.695ENSRNOG00000028592AABR07035074.110079.020Rattus_norvegicus
ENSPREG00000001589pabpc410083.447ENSRBIG00000039761PABPC410083.447Rhinopithecus_bieti
ENSPREG00000001589pabpc410083.447ENSRROG00000033355PABPC410083.447Rhinopithecus_roxellana
ENSPREG00000001589pabpc410083.178ENSSBOG00000026193PABPC410083.220Saimiri_boliviensis_boliviensis
ENSPREG00000001589pabpc49787.480ENSSHAG00000018139PABPC410086.142Sarcophilus_harrisii
ENSPREG00000001589pabpc49990.523ENSSFOG00015023514pabpc410090.523Scleropages_formosus
ENSPREG00000001589pabpc410095.056ENSSMAG00000009007pabpc410095.056Scophthalmus_maximus
ENSPREG00000001589pabpc49996.117ENSSDUG00000012683pabpc49995.687Seriola_dumerili
ENSPREG00000001589pabpc49996.117ENSSLDG00000013025pabpc49995.687Seriola_lalandi_dorsalis
ENSPREG00000001589pabpc49678.441ENSSARG00000000310PABPC410074.150Sorex_araneus
ENSPREG00000001589pabpc49987.122ENSSPUG00000003204PABPC410086.486Sphenodon_punctatus
ENSPREG00000001589pabpc49996.278ENSSPAG00000009252pabpc49995.687Stegastes_partitus
ENSPREG00000001589pabpc49544.268ENSSSCG00000036170-9644.268Sus_scrofa
ENSPREG00000001589pabpc410083.333ENSSSCG00000003660-10083.447Sus_scrofa
ENSPREG00000001589pabpc49981.682ENSTGUG00000001266PABPC410081.955Taeniopygia_guttata
ENSPREG00000001589pabpc410093.930ENSTRUG00000005907pabpc49993.930Takifugu_rubripes
ENSPREG00000001589pabpc410087.061ENSTNIG00000016902pabpc49986.741Tetraodon_nigroviridis
ENSPREG00000001589pabpc49282.400ENSTBEG00000009035PABPC410068.657Tupaia_belangeri
ENSPREG00000001589pabpc49282.400ENSTTRG00000014340PABPC410067.662Tursiops_truncatus
ENSPREG00000001589pabpc410083.447ENSUAMG00000000303PABPC410083.447Ursus_americanus
ENSPREG00000001589pabpc410087.330ENSUMAG00000019585PABPC410090.115Ursus_maritimus
ENSPREG00000001589pabpc46880.769ENSVPAG00000010041PABPC47370.206Vicugna_pacos
ENSPREG00000001589pabpc410083.447ENSVVUG00000005215PABPC410083.447Vulpes_vulpes
ENSPREG00000001589pabpc46895.833ENSXETG00000027221-10095.833Xenopus_tropicalis
ENSPREG00000001589pabpc49982.520ENSXETG00000010946pabpc410081.890Xenopus_tropicalis
ENSPREG00000001589pabpc49996.134ENSXCOG00000013190pabpc49698.585Xiphophorus_couchianus
ENSPREG00000001589pabpc410099.521ENSXMAG00000019007pabpc410099.521Xiphophorus_maculatus

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