EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000001852 (Gene tree)
Gene ID: 103479538
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 7561 bases
Position: chrLG17:17446974-17454534
Accession: 103479538
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000002530	RRM_1	PF00076.22	3.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000002578	-	999	XM_008434028	ENSPREP00000002530	297 (aa)	XP_008432250	-

Gene Model

Click here to download ENSPREG00000001852's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000001852's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000001852	-	91	49.123	ENSPREG00000013805	-	84	48.699
ENSPREG00000001852	-	70	60.731	ENSPREG00000001956	ralyl	75	60.829
ENSPREG00000001852	-	84	77.165	ENSPREG00000007928	-	82	75.984

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000001852	-	71	56.808	ENSG00000184672	RALYL	91	77.922	Homo_sapiens
ENSPREG00000001852	-	84	85.771	ENSAPOG00000006963	hnrnpc	81	81.028	Acanthochromis_polyacanthus
ENSPREG00000001852	-	85	81.081	ENSACIG00000000270	-	81	83.178	Amphilophus_citrinellus
ENSPREG00000001852	-	85	90.980	ENSACIG00000016568	-	89	85.306	Amphilophus_citrinellus
ENSPREG00000001852	-	89	90.943	ENSAOCG00000021616	-	83	91.698	Amphiprion_ocellaris
ENSPREG00000001852	-	84	86.166	ENSAOCG00000003896	-	81	81.423	Amphiprion_ocellaris
ENSPREG00000001852	-	84	86.166	ENSAPEG00000001489	-	81	81.423	Amphiprion_percula
ENSPREG00000001852	-	89	90.943	ENSAPEG00000019962	-	85	91.321	Amphiprion_percula
ENSPREG00000001852	-	85	82.101	ENSATEG00000011734	-	84	80.237	Anabas_testudineus
ENSPREG00000001852	-	89	90.602	ENSATEG00000018006	-	83	91.353	Anabas_testudineus
ENSPREG00000001852	-	92	46.392	ENSAPLG00000015574	RALYL	75	54.751	Anas_platyrhynchos
ENSPREG00000001852	-	71	54.667	ENSACAG00000028464	RALYL	74	55.204	Anolis_carolinensis
ENSPREG00000001852	-	71	56.808	ENSANAG00000023383	RALYL	73	57.416	Aotus_nancymaae
ENSPREG00000001852	-	84	80.237	ENSACLG00000000995	-	94	73.462	Astatotilapia_calliptera
ENSPREG00000001852	-	89	88.390	ENSACLG00000005707	-	90	89.139	Astatotilapia_calliptera
ENSPREG00000001852	-	86	78.378	ENSACLG00000013636	-	84	78.656	Astatotilapia_calliptera
ENSPREG00000001852	-	91	76.384	ENSAMXG00000034915	zgc:55733	86	74.800	Astyanax_mexicanus
ENSPREG00000001852	-	70	75.714	ENSAMXG00000042946	hnrnpc	97	73.684	Astyanax_mexicanus
ENSPREG00000001852	-	71	56.808	ENSCJAG00000000402	RALYL	73	57.416	Callithrix_jacchus
ENSPREG00000001852	-	89	47.552	ENSCPOG00000012314	RALYL	74	55.505	Cavia_porcellus
ENSPREG00000001852	-	71	56.808	ENSCCAG00000025003	RALYL	75	77.922	Cebus_capucinus
ENSPREG00000001852	-	71	56.808	ENSCATG00000042145	RALYL	73	57.416	Cercocebus_atys
ENSPREG00000001852	-	89	47.552	ENSCLAG00000005228	RALYL	74	55.000	Chinchilla_lanigera
ENSPREG00000001852	-	71	53.778	ENSCHOG00000013228	RALYL	74	51.584	Choloepus_hoffmanni
ENSPREG00000001852	-	71	56.808	ENSCANG00000039144	RALYL	73	57.416	Colobus_angolensis_palliatus
ENSPREG00000001852	-	89	47.735	ENSCGRG00001009241	Ralyl	74	54.299	Cricetulus_griseus_chok1gshd
ENSPREG00000001852	-	74	75.893	ENSCSEG00000019769	-	74	73.636	Cynoglossus_semilaevis
ENSPREG00000001852	-	84	87.600	ENSCSEG00000021349	-	88	77.778	Cynoglossus_semilaevis
ENSPREG00000001852	-	93	64.894	ENSCVAG00000002797	-	85	65.748	Cyprinodon_variegatus
ENSPREG00000001852	-	89	96.970	ENSCVAG00000016981	-	81	96.970	Cyprinodon_variegatus
ENSPREG00000001852	-	88	78.327	ENSDARG00000103845	zgc:55733	90	74.297	Danio_rerio
ENSPREG00000001852	-	82	80.488	ENSDARG00000053810	hnrnpc	78	76.892	Danio_rerio
ENSPREG00000001852	-	87	48.057	ENSDORG00000003721	Ralyl	74	55.204	Dipodomys_ordii
ENSPREG00000001852	-	55	56.647	ENSETEG00000014028	RALYL	81	60.377	Echinops_telfairi
ENSPREG00000001852	-	90	41.844	ENSEBUG00000012363	hnrnpc	69	44.130	Eptatretus_burgeri
ENSPREG00000001852	-	90	42.606	ENSEBUG00000006049	RALYL	86	41.985	Eptatretus_burgeri
ENSPREG00000001852	-	89	48.084	ENSEEUG00000007202	RALYL	76	55.000	Erinaceus_europaeus
ENSPREG00000001852	-	94	72.391	ENSELUG00000007714	-	88	75.096	Esox_lucius
ENSPREG00000001852	-	89	77.574	ENSELUG00000004132	-	91	73.571	Esox_lucius
ENSPREG00000001852	-	71	57.674	ENSFALG00000008647	RALYL	96	57.346	Ficedula_albicollis
ENSPREG00000001852	-	92	74.460	ENSFHEG00000003605	-	83	74.803	Fundulus_heteroclitus
ENSPREG00000001852	-	85	91.418	ENSFHEG00000007278	-	81	91.288	Fundulus_heteroclitus
ENSPREG00000001852	-	70	57.746	ENSGALG00000036938	RALYL	74	54.751	Gallus_gallus
ENSPREG00000001852	-	85	98.814	ENSGAFG00000020992	-	82	98.795	Gambusia_affinis
ENSPREG00000001852	-	92	74.101	ENSGAFG00000020486	-	83	75.664	Gambusia_affinis
ENSPREG00000001852	-	72	73.423	ENSGACG00000018932	-	85	68.246	Gasterosteus_aculeatus
ENSPREG00000001852	-	86	86.770	ENSGACG00000017772	-	96	88.755	Gasterosteus_aculeatus
ENSPREG00000001852	-	71	56.808	ENSGGOG00000000841	RALYL	73	57.416	Gorilla_gorilla
ENSPREG00000001852	-	89	88.390	ENSHBUG00000010527	-	84	89.139	Haplochromis_burtoni
ENSPREG00000001852	-	84	80.632	ENSHBUG00000018342	-	87	78.358	Haplochromis_burtoni
ENSPREG00000001852	-	89	47.203	ENSHGLG00000004866	RALYL	74	54.545	Heterocephalus_glaber_female
ENSPREG00000001852	-	89	47.203	ENSHGLG00100017480	RALYL	74	54.545	Heterocephalus_glaber_male
ENSPREG00000001852	-	87	83.088	ENSHCOG00000012333	hnrnpc	91	83.032	Hippocampus_comes
ENSPREG00000001852	-	88	77.273	ENSIPUG00000008666	zgc:55733	99	73.913	Ictalurus_punctatus
ENSPREG00000001852	-	86	78.682	ENSIPUG00000011271	hnrnpc	99	76.754	Ictalurus_punctatus
ENSPREG00000001852	-	89	47.387	ENSSTOG00000012583	RALYL	76	54.751	Ictidomys_tridecemlineatus
ENSPREG00000001852	-	93	75.000	ENSKMAG00000011170	-	81	78.261	Kryptolebias_marmoratus
ENSPREG00000001852	-	89	91.698	ENSKMAG00000018265	-	83	92.075	Kryptolebias_marmoratus
ENSPREG00000001852	-	94	72.014	ENSLBEG00000024418	-	84	72.093	Labrus_bergylta
ENSPREG00000001852	-	92	74.638	ENSLBEG00000006979	-	85	75.502	Labrus_bergylta
ENSPREG00000001852	-	88	88.550	ENSLBEG00000006193	-	84	89.015	Labrus_bergylta
ENSPREG00000001852	-	88	67.910	ENSLOCG00000002560	hnrnpc	88	68.992	Lepisosteus_oculatus
ENSPREG00000001852	-	71	56.808	ENSMNEG00000033288	RALYL	73	57.416	Macaca_nemestrina
ENSPREG00000001852	-	71	56.808	ENSMLEG00000038284	RALYL	73	57.416	Mandrillus_leucophaeus
ENSPREG00000001852	-	85	82.031	ENSMAMG00000012236	-	84	78.571	Mastacembelus_armatus
ENSPREG00000001852	-	89	89.850	ENSMAMG00000008033	-	90	90.602	Mastacembelus_armatus
ENSPREG00000001852	-	84	80.237	ENSMZEG00005020460	-	87	77.985	Maylandia_zebra
ENSPREG00000001852	-	89	88.390	ENSMZEG00005024249	-	84	89.139	Maylandia_zebra
ENSPREG00000001852	-	89	47.735	ENSMAUG00000015149	Ralyl	74	54.299	Mesocricetus_auratus
ENSPREG00000001852	-	89	48.551	ENSMICG00000005558	RALYL	76	78.667	Microcebus_murinus
ENSPREG00000001852	-	89	47.735	ENSMOCG00000017371	Ralyl	74	54.299	Microtus_ochrogaster
ENSPREG00000001852	-	83	89.960	ENSMMOG00000019520	-	81	91.981	Mola_mola
ENSPREG00000001852	-	93	77.778	ENSMMOG00000021465	-	88	80.159	Mola_mola
ENSPREG00000001852	-	89	85.660	ENSMALG00000014623	-	84	86.792	Monopterus_albus
ENSPREG00000001852	-	85	74.118	ENSMALG00000007520	-	83	71.713	Monopterus_albus
ENSPREG00000001852	-	89	47.735	ENSMUSG00000039717	Ralyl	91	76.623	Mus_musculus
ENSPREG00000001852	-	89	48.780	ENSMPUG00000010724	RALYL	74	54.299	Mustela_putorius_furo
ENSPREG00000001852	-	89	47.387	ENSNGAG00000013375	Ralyl	74	54.299	Nannospalax_galili
ENSPREG00000001852	-	89	88.390	ENSNBRG00000015676	-	83	89.139	Neolamprologus_brichardi
ENSPREG00000001852	-	86	81.008	ENSNBRG00000004912	-	91	78.829	Neolamprologus_brichardi
ENSPREG00000001852	-	71	56.808	ENSNLEG00000002702	RALYL	70	57.416	Nomascus_leucogenys
ENSPREG00000001852	-	60	50.000	ENSOPRG00000013650	-	98	47.368	Ochotona_princeps
ENSPREG00000001852	-	89	47.552	ENSODEG00000001012	RALYL	74	54.545	Octodon_degus
ENSPREG00000001852	-	89	88.015	ENSONIG00000018350	-	84	88.764	Oreochromis_niloticus
ENSPREG00000001852	-	84	81.423	ENSONIG00000007859	-	90	80.460	Oreochromis_niloticus
ENSPREG00000001852	-	89	91.176	ENSORLG00000003144	-	82	91.176	Oryzias_latipes
ENSPREG00000001852	-	84	73.333	ENSORLG00000009999	-	82	71.373	Oryzias_latipes
ENSPREG00000001852	-	84	72.941	ENSORLG00020018228	hnrnpc	82	70.980	Oryzias_latipes_hni
ENSPREG00000001852	-	84	73.333	ENSORLG00015019755	-	82	71.373	Oryzias_latipes_hsok
ENSPREG00000001852	-	89	91.176	ENSORLG00015009460	-	82	91.176	Oryzias_latipes_hsok
ENSPREG00000001852	-	89	93.585	ENSOMEG00000022665	-	83	93.585	Oryzias_melastigma
ENSPREG00000001852	-	86	75.000	ENSOMEG00000020488	-	83	74.615	Oryzias_melastigma
ENSPREG00000001852	-	71	56.808	ENSPPAG00000038705	RALYL	73	57.416	Pan_paniscus
ENSPREG00000001852	-	89	50.903	ENSPPRG00000018612	RALYL	73	57.346	Panthera_pardus
ENSPREG00000001852	-	89	50.903	ENSPTIG00000020331	RALYL	73	57.346	Panthera_tigris_altaica
ENSPREG00000001852	-	71	56.808	ENSPTRG00000020381	RALYL	73	57.416	Pan_troglodytes
ENSPREG00000001852	-	71	56.808	ENSPANG00000029305	RALYL	73	57.416	Papio_anubis
ENSPREG00000001852	-	96	75.170	ENSPKIG00000022837	-	88	75.801	Paramormyrops_kingsleyae
ENSPREG00000001852	-	89	77.574	ENSPKIG00000008592	-	89	71.986	Paramormyrops_kingsleyae
ENSPREG00000001852	-	71	54.667	ENSPSIG00000011135	RALYL	74	54.751	Pelodiscus_sinensis
ENSPREG00000001852	-	69	80.097	ENSPMGG00000017774	-	92	64.126	Periophthalmus_magnuspinnatus
ENSPREG00000001852	-	74	88.235	ENSPMGG00000013144	-	82	84.793	Periophthalmus_magnuspinnatus
ENSPREG00000001852	-	89	47.735	ENSPEMG00000016447	Ralyl	74	54.299	Peromyscus_maniculatus_bairdii
ENSPREG00000001852	-	71	54.867	ENSPMAG00000002407	RALYL	96	54.054	Petromyzon_marinus
ENSPREG00000001852	-	92	75.090	ENSPFOG00000001583	-	82	77.559	Poecilia_formosa
ENSPREG00000001852	-	97	98.270	ENSPFOG00000002643	-	90	98.270	Poecilia_formosa
ENSPREG00000001852	-	97	98.270	ENSPLAG00000000061	-	90	98.270	Poecilia_latipinna
ENSPREG00000001852	-	92	73.551	ENSPLAG00000015305	-	82	75.889	Poecilia_latipinna
ENSPREG00000001852	-	97	97.578	ENSPMEG00000016524	-	90	97.578	Poecilia_mexicana
ENSPREG00000001852	-	92	76.619	ENSPMEG00000004802	-	82	77.559	Poecilia_mexicana
ENSPREG00000001852	-	71	53.125	ENSPVAG00000010821	RALYL	78	52.586	Pteropus_vampyrus
ENSPREG00000001852	-	88	79.924	ENSPNYG00000020293	-	86	79.051	Pundamilia_nyererei
ENSPREG00000001852	-	89	88.390	ENSPNYG00000003747	-	90	89.139	Pundamilia_nyererei
ENSPREG00000001852	-	88	72.862	ENSPNAG00000019200	zgc:55733	81	73.725	Pygocentrus_nattereri
ENSPREG00000001852	-	82	78.138	ENSPNAG00000015686	hnrnpc	89	76.981	Pygocentrus_nattereri
ENSPREG00000001852	-	71	56.808	ENSRROG00000023925	RALYL	78	77.922	Rhinopithecus_roxellana
ENSPREG00000001852	-	89	75.277	ENSSFOG00015012015	-	83	82.488	Scleropages_formosus
ENSPREG00000001852	-	85	78.626	ENSSFOG00015012924	-	82	96.296	Scleropages_formosus
ENSPREG00000001852	-	82	80.321	ENSSMAG00000013592	-	79	78.715	Scophthalmus_maximus
ENSPREG00000001852	-	87	89.695	ENSSMAG00000011147	-	81	91.364	Scophthalmus_maximus
ENSPREG00000001852	-	91	79.273	ENSSDUG00000001723	-	81	81.028	Seriola_dumerili
ENSPREG00000001852	-	89	86.415	ENSSDUG00000006730	-	84	86.415	Seriola_dumerili
ENSPREG00000001852	-	89	86.415	ENSSLDG00000007474	-	92	86.415	Seriola_lalandi_dorsalis
ENSPREG00000001852	-	91	79.636	ENSSLDG00000007454	-	82	81.423	Seriola_lalandi_dorsalis
ENSPREG00000001852	-	92	79.710	ENSSPAG00000023204	-	81	81.818	Stegastes_partitus
ENSPREG00000001852	-	89	91.667	ENSSPAG00000013996	-	84	92.424	Stegastes_partitus
ENSPREG00000001852	-	92	46.392	ENSTGUG00000011689	RALYL	79	53.478	Taeniopygia_guttata
ENSPREG00000001852	-	88	78.409	ENSTRUG00000020158	-	82	75.697	Takifugu_rubripes
ENSPREG00000001852	-	85	79.051	ENSTNIG00000000334	-	93	77.344	Tetraodon_nigroviridis
ENSPREG00000001852	-	85	78.378	ENSTNIG00000007427	-	83	78.431	Tetraodon_nigroviridis
ENSPREG00000001852	-	71	48.684	ENSTBEG00000005551	RALYL	86	49.772	Tupaia_belangeri
ENSPREG00000001852	-	89	46.154	ENSTTRG00000015762	RALYL	74	52.336	Tursiops_truncatus
ENSPREG00000001852	-	89	46.377	ENSVPAG00000008501	RALYL	73	53.110	Vicugna_pacos
ENSPREG00000001852	-	52	93.827	ENSXCOG00000019434	-	68	93.671	Xiphophorus_couchianus
ENSPREG00000001852	-	92	70.251	ENSXCOG00000006552	-	81	70.472	Xiphophorus_couchianus
ENSPREG00000001852	-	92	75.899	ENSXMAG00000009333	-	82	75.984	Xiphophorus_maculatus
ENSPREG00000001852	-	98	97.938	ENSXMAG00000022849	-	95	97.938	Xiphophorus_maculatus