EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000002189 (Gene tree)
Gene ID: 103459221
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 168599 bases
Position: chrLG23:3662479-3831077
Accession: 103459221
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000003087	TUDOR	PF00567.24	1e-25	1	1
ENSPREP00000003116	TUDOR	PF00567.24	1.2e-25	1	1
ENSPREP00000003087	SNase	PF00565.17	1.6e-67	1	4
ENSPREP00000003087	SNase	PF00565.17	1.6e-67	2	4
ENSPREP00000003087	SNase	PF00565.17	1.6e-67	3	4
ENSPREP00000003087	SNase	PF00565.17	1.6e-67	4	4
ENSPREP00000003116	SNase	PF00565.17	6.8e-62	1	4
ENSPREP00000003116	SNase	PF00565.17	6.8e-62	2	4
ENSPREP00000003116	SNase	PF00565.17	6.8e-62	3	4
ENSPREP00000003116	SNase	PF00565.17	6.8e-62	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000003139	-	2736	XM_008400601	ENSPREP00000003087	911 (aa)	XP_008398823	UPI0004A27A55
ENSPRET00000003169	-	2709	-	ENSPREP00000003116	902 (aa)	-	-

Gene Model

Click here to download ENSPREG00000002189's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000002189's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000002189	snd1	99	84.761	ENSG00000197157	SND1	100	83.882	Homo_sapiens
ENSPREG00000002189	snd1	100	96.158	ENSAPOG00000017599	snd1	100	96.158	Acanthochromis_polyacanthus
ENSPREG00000002189	snd1	100	83.917	ENSAMEG00000004664	SND1	94	83.917	Ailuropoda_melanoleuca
ENSPREG00000002189	snd1	100	92.206	ENSACIG00000003551	snd1	100	92.206	Amphilophus_citrinellus
ENSPREG00000002189	snd1	100	95.829	ENSAOCG00000014166	snd1	100	95.829	Amphiprion_ocellaris
ENSPREG00000002189	snd1	100	95.829	ENSAPEG00000007067	snd1	100	95.829	Amphiprion_percula
ENSPREG00000002189	snd1	98	95.190	ENSATEG00000018475	snd1	89	95.190	Anabas_testudineus
ENSPREG00000002189	snd1	99	84.872	ENSANAG00000034463	SND1	100	83.991	Aotus_nancymaae
ENSPREG00000002189	snd1	100	94.621	ENSACLG00000022897	snd1	100	94.621	Astatotilapia_calliptera
ENSPREG00000002189	snd1	99	90.110	ENSAMXG00000016318	snd1	99	90.110	Astyanax_mexicanus
ENSPREG00000002189	snd1	99	85.095	ENSBTAG00000010692	SND1	100	84.211	Bos_taurus
ENSPREG00000002189	snd1	99	47.186	WBGene00006626	tsn-1	99	47.186	Caenorhabditis_elegans
ENSPREG00000002189	snd1	99	84.650	ENSCJAG00000017668	SND1	100	83.772	Callithrix_jacchus
ENSPREG00000002189	snd1	100	84.211	ENSCAFG00000001700	SND1	100	84.211	Canis_familiaris
ENSPREG00000002189	snd1	100	84.211	ENSCAFG00020021639	SND1	100	84.211	Canis_lupus_dingo
ENSPREG00000002189	snd1	99	84.983	ENSCHIG00000023390	SND1	100	84.101	Capra_hircus
ENSPREG00000002189	snd1	71	88.070	ENSTSYG00000004979	SND1	96	88.070	Carlito_syrichta
ENSPREG00000002189	snd1	97	74.662	ENSCAPG00000010677	SND1	97	74.025	Cavia_aperea
ENSPREG00000002189	snd1	99	84.761	ENSCPOG00000006251	SND1	100	83.882	Cavia_porcellus
ENSPREG00000002189	snd1	99	84.872	ENSCCAG00000036847	SND1	100	83.991	Cebus_capucinus
ENSPREG00000002189	snd1	99	84.983	ENSCATG00000035214	SND1	99	85.102	Cercocebus_atys
ENSPREG00000002189	snd1	99	84.983	ENSCLAG00000011796	SND1	98	86.242	Chinchilla_lanigera
ENSPREG00000002189	snd1	99	84.983	ENSCSAG00000010182	SND1	100	84.101	Chlorocebus_sabaeus
ENSPREG00000002189	snd1	78	74.257	ENSCHOG00000002218	SND1	86	74.257	Choloepus_hoffmanni
ENSPREG00000002189	snd1	100	83.974	ENSCPBG00000018094	SND1	100	83.974	Chrysemys_picta_bellii
ENSPREG00000002189	snd1	98	56.146	ENSCING00000000524	-	99	55.447	Ciona_intestinalis
ENSPREG00000002189	snd1	99	56.550	ENSCSAVG00000008807	-	99	56.346	Ciona_savignyi
ENSPREG00000002189	snd1	99	84.983	ENSCANG00000035119	SND1	100	84.101	Colobus_angolensis_palliatus
ENSPREG00000002189	snd1	99	84.316	ENSCGRG00001022514	Snd1	98	85.906	Cricetulus_griseus_chok1gshd
ENSPREG00000002189	snd1	97	84.424	ENSCGRG00000012277	Snd1	99	84.424	Cricetulus_griseus_crigri
ENSPREG00000002189	snd1	100	93.524	ENSCSEG00000008661	snd1	100	93.524	Cynoglossus_semilaevis
ENSPREG00000002189	snd1	100	97.146	ENSCVAG00000010316	snd1	100	97.146	Cyprinodon_variegatus
ENSPREG00000002189	snd1	100	89.157	ENSDARG00000006766	snd1	99	90.829	Danio_rerio
ENSPREG00000002189	snd1	97	83.015	ENSDNOG00000006795	SND1	100	83.015	Dasypus_novemcinctus
ENSPREG00000002189	snd1	99	84.761	ENSDORG00000000336	Snd1	100	83.882	Dipodomys_ordii
ENSPREG00000002189	snd1	98	50.054	FBgn0035121	Tudor-SN	99	49.625	Drosophila_melanogaster
ENSPREG00000002189	snd1	90	88.889	ENSETEG00000000375	SND1	92	88.889	Echinops_telfairi
ENSPREG00000002189	snd1	61	66.846	ENSEBUG00000014201	-	84	76.630	Eptatretus_burgeri
ENSPREG00000002189	snd1	99	83.589	ENSEASG00005008513	SND1	100	82.740	Equus_asinus_asinus
ENSPREG00000002189	snd1	99	84.761	ENSECAG00000011451	SND1	100	83.772	Equus_caballus
ENSPREG00000002189	snd1	99	75.195	ENSEEUG00000014737	SND1	100	74.452	Erinaceus_europaeus
ENSPREG00000002189	snd1	99	88.474	ENSELUG00000001805	snd1	96	88.474	Esox_lucius
ENSPREG00000002189	snd1	100	84.101	ENSFCAG00000008289	SND1	100	84.101	Felis_catus
ENSPREG00000002189	snd1	98	84.676	ENSFDAG00000015881	SND1	100	83.662	Fukomys_damarensis
ENSPREG00000002189	snd1	100	94.629	ENSFHEG00000004093	snd1	100	96.036	Fundulus_heteroclitus
ENSPREG00000002189	snd1	75	82.768	ENSGMOG00000018932	snd1	66	82.768	Gadus_morhua
ENSPREG00000002189	snd1	100	98.683	ENSGAFG00000008421	snd1	100	98.683	Gambusia_affinis
ENSPREG00000002189	snd1	100	61.063	ENSGACG00000019793	snd1	100	61.063	Gasterosteus_aculeatus
ENSPREG00000002189	snd1	99	84.983	ENSGGOG00000009614	SND1	99	85.102	Gorilla_gorilla
ENSPREG00000002189	snd1	100	94.512	ENSHBUG00000019135	snd1	100	94.512	Haplochromis_burtoni
ENSPREG00000002189	snd1	99	84.538	ENSHGLG00000003618	SND1	98	86.074	Heterocephalus_glaber_female
ENSPREG00000002189	snd1	99	84.538	ENSHGLG00100012449	SND1	99	84.538	Heterocephalus_glaber_male
ENSPREG00000002189	snd1	100	92.097	ENSHCOG00000005266	snd1	100	92.097	Hippocampus_comes
ENSPREG00000002189	snd1	99	88.255	ENSIPUG00000013279	snd1	99	88.255	Ictalurus_punctatus
ENSPREG00000002189	snd1	99	84.872	ENSSTOG00000002140	SND1	100	83.991	Ictidomys_tridecemlineatus
ENSPREG00000002189	snd1	99	84.872	ENSJJAG00000009561	Snd1	100	83.991	Jaculus_jaculus
ENSPREG00000002189	snd1	100	96.597	ENSKMAG00000016997	snd1	100	96.597	Kryptolebias_marmoratus
ENSPREG00000002189	snd1	100	93.524	ENSLBEG00000013563	snd1	100	93.524	Labrus_bergylta
ENSPREG00000002189	snd1	99	88.631	ENSLOCG00000015537	snd1	99	87.908	Lepisosteus_oculatus
ENSPREG00000002189	snd1	100	84.211	ENSLAFG00000009696	SND1	100	84.211	Loxodonta_africana
ENSPREG00000002189	snd1	99	84.983	ENSMFAG00000038114	SND1	99	85.102	Macaca_fascicularis
ENSPREG00000002189	snd1	99	84.983	ENSMMUG00000015432	SND1	100	84.101	Macaca_mulatta
ENSPREG00000002189	snd1	99	84.983	ENSMNEG00000039808	SND1	97	88.183	Macaca_nemestrina
ENSPREG00000002189	snd1	99	84.872	ENSMLEG00000029040	SND1	97	88.183	Mandrillus_leucophaeus
ENSPREG00000002189	snd1	100	94.621	ENSMAMG00000011739	snd1	100	94.621	Mastacembelus_armatus
ENSPREG00000002189	snd1	100	94.621	ENSMZEG00005005681	snd1	100	94.621	Maylandia_zebra
ENSPREG00000002189	snd1	99	84.872	ENSMICG00000000097	SND1	100	83.991	Microcebus_murinus
ENSPREG00000002189	snd1	99	84.872	ENSMOCG00000005040	Snd1	100	83.991	Microtus_ochrogaster
ENSPREG00000002189	snd1	100	94.292	ENSMMOG00000001795	snd1	100	94.292	Mola_mola
ENSPREG00000002189	snd1	99	84.205	ENSMODG00000015182	SND1	100	83.333	Monodelphis_domestica
ENSPREG00000002189	snd1	100	94.621	ENSMALG00000012071	snd1	100	94.621	Monopterus_albus
ENSPREG00000002189	snd1	98	84.564	MGP_CAROLIEiJ_G0028159	Snd1	99	85.882	Mus_caroli
ENSPREG00000002189	snd1	98	84.340	ENSMUSG00000001424	Snd1	100	83.333	Mus_musculus
ENSPREG00000002189	snd1	98	84.564	MGP_PahariEiJ_G0021917	Snd1	100	85.882	Mus_pahari
ENSPREG00000002189	snd1	98	84.564	MGP_SPRETEiJ_G0029159	Snd1	100	83.553	Mus_spretus
ENSPREG00000002189	snd1	100	84.101	ENSMPUG00000006545	SND1	100	83.662	Mustela_putorius_furo
ENSPREG00000002189	snd1	97	83.835	ENSMLUG00000017130	SND1	99	83.166	Myotis_lucifugus
ENSPREG00000002189	snd1	99	84.761	ENSNGAG00000011186	Snd1	100	83.882	Nannospalax_galili
ENSPREG00000002189	snd1	100	94.621	ENSNBRG00000006681	snd1	100	94.621	Neolamprologus_brichardi
ENSPREG00000002189	snd1	100	84.101	ENSNLEG00000012263	SND1	99	86.555	Nomascus_leucogenys
ENSPREG00000002189	snd1	91	88.889	ENSOPRG00000013405	SND1	92	88.889	Ochotona_princeps
ENSPREG00000002189	snd1	99	84.983	ENSODEG00000011502	SND1	99	84.983	Octodon_degus
ENSPREG00000002189	snd1	100	94.512	ENSONIG00000011481	snd1	97	94.512	Oreochromis_niloticus
ENSPREG00000002189	snd1	98	83.820	ENSOANG00000000817	SND1	99	82.527	Ornithorhynchus_anatinus
ENSPREG00000002189	snd1	99	83.407	ENSOCUG00000001620	SND1	99	83.407	Oryctolagus_cuniculus
ENSPREG00000002189	snd1	100	93.963	ENSORLG00000015201	snd1	100	93.963	Oryzias_latipes
ENSPREG00000002189	snd1	100	93.963	ENSORLG00020013991	snd1	100	93.963	Oryzias_latipes_hni
ENSPREG00000002189	snd1	100	93.963	ENSORLG00015012436	snd1	100	93.963	Oryzias_latipes_hsok
ENSPREG00000002189	snd1	100	94.292	ENSOMEG00000006406	snd1	100	94.292	Oryzias_melastigma
ENSPREG00000002189	snd1	99	84.795	ENSOGAG00000013356	SND1	94	83.917	Otolemur_garnettii
ENSPREG00000002189	snd1	97	82.751	ENSOARG00000002149	SND1	100	82.751	Ovis_aries
ENSPREG00000002189	snd1	99	84.872	ENSPPAG00000042947	SND1	100	83.991	Pan_paniscus
ENSPREG00000002189	snd1	100	84.101	ENSPPRG00000004494	SND1	100	84.101	Panthera_pardus
ENSPREG00000002189	snd1	100	83.991	ENSPTIG00000014214	SND1	100	83.991	Panthera_tigris_altaica
ENSPREG00000002189	snd1	99	84.872	ENSPTRG00000023911	SND1	100	83.991	Pan_troglodytes
ENSPREG00000002189	snd1	97	85.102	ENSPANG00000011997	SND1	99	85.102	Papio_anubis
ENSPREG00000002189	snd1	99	86.329	ENSPKIG00000023494	snd1	99	85.823	Paramormyrops_kingsleyae
ENSPREG00000002189	snd1	92	93.765	ENSPMGG00000003629	snd1	100	93.660	Periophthalmus_magnuspinnatus
ENSPREG00000002189	snd1	99	84.650	ENSPEMG00000010240	Snd1	100	83.772	Peromyscus_maniculatus_bairdii
ENSPREG00000002189	snd1	97	74.041	ENSPMAG00000007915	-	99	73.928	Petromyzon_marinus
ENSPREG00000002189	snd1	99	84.761	ENSPCIG00000011561	SND1	100	83.882	Phascolarctos_cinereus
ENSPREG00000002189	snd1	100	98.683	ENSPFOG00000001557	snd1	100	98.683	Poecilia_formosa
ENSPREG00000002189	snd1	100	98.683	ENSPLAG00000018459	snd1	97	98.683	Poecilia_latipinna
ENSPREG00000002189	snd1	100	99.122	ENSPMEG00000006803	snd1	100	99.122	Poecilia_mexicana
ENSPREG00000002189	snd1	91	88.889	ENSPPYG00000017972	SND1	100	88.889	Pongo_abelii
ENSPREG00000002189	snd1	99	74.750	ENSPCAG00000011305	SND1	100	74.013	Procavia_capensis
ENSPREG00000002189	snd1	99	84.983	ENSPCOG00000026791	SND1	100	85.118	Propithecus_coquereli
ENSPREG00000002189	snd1	99	82.759	ENSPVAG00000013945	SND1	100	81.908	Pteropus_vampyrus
ENSPREG00000002189	snd1	100	94.512	ENSPNYG00000000932	snd1	100	94.512	Pundamilia_nyererei
ENSPREG00000002189	snd1	99	90.440	ENSPNAG00000001206	snd1	99	90.440	Pygocentrus_nattereri
ENSPREG00000002189	snd1	98	84.452	ENSRNOG00000031173	Snd1	100	83.540	Rattus_norvegicus
ENSPREG00000002189	snd1	71	88.764	ENSRBIG00000027782	-	93	88.826	Rhinopithecus_bieti
ENSPREG00000002189	snd1	99	84.983	ENSRROG00000033020	SND1	100	84.101	Rhinopithecus_roxellana
ENSPREG00000002189	snd1	99	84.761	ENSSBOG00000032461	SND1	100	83.882	Saimiri_boliviensis_boliviensis
ENSPREG00000002189	snd1	98	81.461	ENSSHAG00000015359	SND1	100	81.461	Sarcophilus_harrisii
ENSPREG00000002189	snd1	98	87.916	ENSSFOG00015001103	snd1	99	87.146	Scleropages_formosus
ENSPREG00000002189	snd1	100	94.182	ENSSMAG00000001932	snd1	95	94.182	Scophthalmus_maximus
ENSPREG00000002189	snd1	100	96.048	ENSSDUG00000002699	snd1	94	96.048	Seriola_dumerili
ENSPREG00000002189	snd1	100	88.364	ENSSLDG00000001950	snd1	100	88.364	Seriola_lalandi_dorsalis
ENSPREG00000002189	snd1	87	81.001	ENSSARG00000004877	SND1	92	81.001	Sorex_araneus
ENSPREG00000002189	snd1	72	80.442	ENSSPUG00000017586	SND1	97	80.442	Sphenodon_punctatus
ENSPREG00000002189	snd1	73	94.924	ENSSPAG00000021398	snd1	99	94.924	Stegastes_partitus
ENSPREG00000002189	snd1	99	84.650	ENSSSCG00000016590	SND1	100	83.772	Sus_scrofa
ENSPREG00000002189	snd1	100	93.121	ENSTRUG00000014067	snd1	100	92.316	Takifugu_rubripes
ENSPREG00000002189	snd1	100	93.085	ENSTNIG00000011019	snd1	100	93.085	Tetraodon_nigroviridis
ENSPREG00000002189	snd1	94	79.294	ENSTBEG00000003999	SND1	100	79.294	Tupaia_belangeri
ENSPREG00000002189	snd1	99	80.534	ENSTTRG00000006059	SND1	100	79.715	Tursiops_truncatus
ENSPREG00000002189	snd1	68	77.807	ENSUAMG00000002820	-	89	77.807	Ursus_americanus
ENSPREG00000002189	snd1	87	83.460	ENSUAMG00000005604	-	93	83.460	Ursus_americanus
ENSPREG00000002189	snd1	100	83.991	ENSUMAG00000005960	SND1	100	83.991	Ursus_maritimus
ENSPREG00000002189	snd1	77	88.889	ENSVPAG00000008302	SND1	74	88.889	Vicugna_pacos
ENSPREG00000002189	snd1	100	84.101	ENSVVUG00000007226	SND1	100	84.101	Vulpes_vulpes
ENSPREG00000002189	snd1	97	79.932	ENSXETG00000023043	snd1	100	79.795	Xenopus_tropicalis
ENSPREG00000002189	snd1	92	96.158	ENSXCOG00000013629	snd1	99	95.487	Xiphophorus_couchianus
ENSPREG00000002189	snd1	100	98.793	ENSXMAG00000011469	snd1	100	98.793	Xiphophorus_maculatus