EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000002389 (Gene tree)
Gene ID: 103471012
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 28799 bases
Position: chrLG10:6488104-6516902
Accession: 103471012
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000003438	RNA_pol_Rpb1_5	PF04998.17	1.2e-99	1	1
ENSPREP00000003406	RNA_pol_Rpb1_5	PF04998.17	1.4e-99	1	1
ENSPREP00000003406	RNA_pol_Rpb1_4	PF05000.17	3.1e-21	1	1
ENSPREP00000003438	RNA_pol_Rpb1_4	PF05000.17	3.7e-21	1	1
ENSPREP00000003438	RNA_pol_Rpb1_2	PF00623.20	2.8e-68	1	1
ENSPREP00000003406	RNA_pol_Rpb1_2	PF00623.20	2.9e-68	1	1
ENSPREP00000003438	RNA_pol_Rpb1_3	PF04983.18	3.1e-36	1	1
ENSPREP00000003406	RNA_pol_Rpb1_3	PF04983.18	3.1e-36	1	1
ENSPREP00000003438	RNA_pol_Rpb1_1	PF04997.12	6.8e-24	1	1
ENSPREP00000003406	RNA_pol_Rpb1_1	PF04997.12	1.5e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000003492	-	4866	-	ENSPREP00000003438	1621 (aa)	-	-
ENSPRET00000003461	-	5088	XM_008419771	ENSPREP00000003406	1695 (aa)	XP_008417993	UPI0004A3E25C

Gene Model

Click here to download ENSPREG00000002389's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000002389's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000002389	polr1a	64	33.186	ENSPREG00000002385	polr3a	69	33.039
ENSPREG00000002389	polr1a	71	33.962	ENSPREG00000013122	polr2a	58	34.286

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000002389	polr1a	100	65.489	ENSG00000068654	POLR1A	100	65.585	Homo_sapiens
ENSPREG00000002389	polr1a	69	84.439	ENSAPOG00000017945	polr1a	99	84.465	Acanthochromis_polyacanthus
ENSPREG00000002389	polr1a	100	64.750	ENSAMEG00000005807	POLR1A	100	68.469	Ailuropoda_melanoleuca
ENSPREG00000002389	polr1a	100	77.902	ENSACIG00000022147	polr1a	100	77.758	Amphilophus_citrinellus
ENSPREG00000002389	polr1a	100	82.845	ENSAOCG00000017336	polr1a	100	83.180	Amphiprion_ocellaris
ENSPREG00000002389	polr1a	100	82.787	ENSAPEG00000016105	polr1a	100	82.573	Amphiprion_percula
ENSPREG00000002389	polr1a	100	82.619	ENSATEG00000016773	polr1a	100	82.649	Anabas_testudineus
ENSPREG00000002389	polr1a	88	66.014	ENSAPLG00000013871	POLR1A	99	67.459	Anas_platyrhynchos
ENSPREG00000002389	polr1a	99	64.344	ENSACAG00000012141	POLR1A	99	64.053	Anolis_carolinensis
ENSPREG00000002389	polr1a	100	65.046	ENSANAG00000033927	POLR1A	100	65.278	Aotus_nancymaae
ENSPREG00000002389	polr1a	100	77.245	ENSACLG00000020541	polr1a	100	76.820	Astatotilapia_calliptera
ENSPREG00000002389	polr1a	100	64.679	ENSBTAG00000006481	POLR1A	100	64.771	Bos_taurus
ENSPREG00000002389	polr1a	95	43.651	WBGene00012999	rpoa-1	98	38.693	Caenorhabditis_elegans
ENSPREG00000002389	polr1a	100	65.142	ENSCJAG00000019547	POLR1A	100	65.373	Callithrix_jacchus
ENSPREG00000002389	polr1a	100	64.965	ENSCAFG00000007613	POLR1A	100	65.139	Canis_familiaris
ENSPREG00000002389	polr1a	100	64.821	ENSCAFG00020014752	POLR1A	100	64.951	Canis_lupus_dingo
ENSPREG00000002389	polr1a	100	64.348	ENSCHIG00000018204	POLR1A	100	63.942	Capra_hircus
ENSPREG00000002389	polr1a	100	64.925	ENSTSYG00000002761	POLR1A	100	64.945	Carlito_syrichta
ENSPREG00000002389	polr1a	97	61.930	ENSCAPG00000010132	POLR1A	99	62.290	Cavia_aperea
ENSPREG00000002389	polr1a	100	64.849	ENSCPOG00000012350	POLR1A	100	65.197	Cavia_porcellus
ENSPREG00000002389	polr1a	100	64.815	ENSCCAG00000019839	POLR1A	100	65.451	Cebus_capucinus
ENSPREG00000002389	polr1a	100	65.547	ENSCATG00000029786	POLR1A	100	65.585	Cercocebus_atys
ENSPREG00000002389	polr1a	100	64.025	ENSCLAG00000005187	POLR1A	100	64.542	Chinchilla_lanigera
ENSPREG00000002389	polr1a	100	65.489	ENSCSAG00000016251	POLR1A	100	65.527	Chlorocebus_sabaeus
ENSPREG00000002389	polr1a	99	66.415	ENSCPBG00000001115	POLR1A	99	66.165	Chrysemys_picta_bellii
ENSPREG00000002389	polr1a	93	55.417	ENSCSAVG00000007184	-	97	53.226	Ciona_savignyi
ENSPREG00000002389	polr1a	100	62.826	ENSCANG00000031785	POLR1A	100	62.710	Colobus_angolensis_palliatus
ENSPREG00000002389	polr1a	100	59.733	ENSCGRG00001006651	Polr1a	100	59.355	Cricetulus_griseus_chok1gshd
ENSPREG00000002389	polr1a	62	62.902	ENSCGRG00000010834	Polr1a	100	63.077	Cricetulus_griseus_crigri
ENSPREG00000002389	polr1a	99	82.353	ENSCSEG00000020190	polr1a	100	75.146	Cynoglossus_semilaevis
ENSPREG00000002389	polr1a	100	84.075	ENSCVAG00000020941	polr1a	100	84.368	Cyprinodon_variegatus
ENSPREG00000002389	polr1a	100	71.820	ENSDARG00000098375	polr1a	100	71.295	Danio_rerio
ENSPREG00000002389	polr1a	100	62.109	ENSDNOG00000010829	POLR1A	100	61.913	Dasypus_novemcinctus
ENSPREG00000002389	polr1a	100	64.159	ENSDORG00000008298	Polr1a	100	64.832	Dipodomys_ordii
ENSPREG00000002389	polr1a	90	47.590	FBgn0019938	RpI1	99	42.874	Drosophila_melanogaster
ENSPREG00000002389	polr1a	72	87.500	ENSETEG00000000412	-	71	87.500	Echinops_telfairi
ENSPREG00000002389	polr1a	91	48.469	ENSEBUG00000005667	-	99	47.717	Eptatretus_burgeri
ENSPREG00000002389	polr1a	100	64.462	ENSEASG00005001625	POLR1A	100	65.142	Equus_asinus_asinus
ENSPREG00000002389	polr1a	100	64.520	ENSECAG00000036306	-	99	69.430	Equus_caballus
ENSPREG00000002389	polr1a	100	64.520	ENSECAG00000010092	POLR1A	99	69.430	Equus_caballus
ENSPREG00000002389	polr1a	100	64.520	ENSECAG00000030510	-	99	69.430	Equus_caballus
ENSPREG00000002389	polr1a	82	85.039	ENSEEUG00000000676	POLR1A	79	85.039	Erinaceus_europaeus
ENSPREG00000002389	polr1a	100	72.119	ENSELUG00000012769	polr1a	99	72.526	Esox_lucius
ENSPREG00000002389	polr1a	100	64.286	ENSFCAG00000008966	POLR1A	100	65.081	Felis_catus
ENSPREG00000002389	polr1a	99	65.281	ENSFALG00000010082	POLR1A	99	64.497	Ficedula_albicollis
ENSPREG00000002389	polr1a	100	63.789	ENSFDAG00000013726	POLR1A	100	64.381	Fukomys_damarensis
ENSPREG00000002389	polr1a	100	81.342	ENSFHEG00000005996	polr1a	100	81.283	Fundulus_heteroclitus
ENSPREG00000002389	polr1a	100	67.536	ENSGMOG00000002230	polr1a	100	67.903	Gadus_morhua
ENSPREG00000002389	polr1a	89	63.566	ENSGALG00000038160	-	98	63.625	Gallus_gallus
ENSPREG00000002389	polr1a	100	90.158	ENSGAFG00000015266	polr1a	100	90.158	Gambusia_affinis
ENSPREG00000002389	polr1a	100	76.599	ENSGACG00000018791	polr1a	100	76.692	Gasterosteus_aculeatus
ENSPREG00000002389	polr1a	93	65.528	ENSGAGG00000004984	-	96	70.886	Gopherus_agassizii
ENSPREG00000002389	polr1a	100	65.605	ENSGGOG00000001788	POLR1A	100	65.701	Gorilla_gorilla
ENSPREG00000002389	polr1a	90	77.930	ENSHBUG00000020021	polr1a	99	78.211	Haplochromis_burtoni
ENSPREG00000002389	polr1a	100	64.730	ENSHGLG00000006334	POLR1A	100	64.614	Heterocephalus_glaber_female
ENSPREG00000002389	polr1a	100	64.542	ENSHGLG00100006614	POLR1A	100	64.426	Heterocephalus_glaber_male
ENSPREG00000002389	polr1a	100	74.368	ENSHCOG00000003345	polr1a	100	74.606	Hippocampus_comes
ENSPREG00000002389	polr1a	100	70.105	ENSIPUG00000013174	polr1a	100	70.140	Ictalurus_punctatus
ENSPREG00000002389	polr1a	100	64.730	ENSSTOG00000012580	POLR1A	100	64.492	Ictidomys_tridecemlineatus
ENSPREG00000002389	polr1a	100	64.890	ENSJJAG00000013113	Polr1a	100	64.713	Jaculus_jaculus
ENSPREG00000002389	polr1a	100	84.127	ENSKMAG00000007399	polr1a	100	83.774	Kryptolebias_marmoratus
ENSPREG00000002389	polr1a	94	82.244	ENSLBEG00000015401	polr1a	99	82.115	Labrus_bergylta
ENSPREG00000002389	polr1a	53	69.891	ENSLACG00000003218	polr1a	100	69.891	Latimeria_chalumnae
ENSPREG00000002389	polr1a	100	69.472	ENSLOCG00000010881	polr1a	100	68.977	Lepisosteus_oculatus
ENSPREG00000002389	polr1a	100	64.719	ENSLAFG00000014948	POLR1A	100	64.442	Loxodonta_africana
ENSPREG00000002389	polr1a	100	65.084	ENSMFAG00000046097	POLR1A	100	65.527	Macaca_fascicularis
ENSPREG00000002389	polr1a	100	65.026	ENSMMUG00000015815	POLR1A	100	65.469	Macaca_mulatta
ENSPREG00000002389	polr1a	100	65.026	ENSMNEG00000043313	POLR1A	100	65.469	Macaca_nemestrina
ENSPREG00000002389	polr1a	100	65.200	ENSMLEG00000042428	POLR1A	100	65.238	Mandrillus_leucophaeus
ENSPREG00000002389	polr1a	100	81.625	ENSMAMG00000016565	polr1a	100	81.331	Mastacembelus_armatus
ENSPREG00000002389	polr1a	100	82.294	ENSMZEG00005004915	polr1a	100	82.027	Maylandia_zebra
ENSPREG00000002389	polr1a	99	62.550	ENSMGAG00000013111	POLR1A	99	62.637	Meleagris_gallopavo
ENSPREG00000002389	polr1a	93	64.524	ENSMAUG00000008497	Polr1a	99	64.832	Mesocricetus_auratus
ENSPREG00000002389	polr1a	100	64.679	ENSMICG00000000757	POLR1A	100	64.794	Microcebus_murinus
ENSPREG00000002389	polr1a	100	65.469	ENSMOCG00000000122	Polr1a	100	65.353	Microtus_ochrogaster
ENSPREG00000002389	polr1a	100	77.465	ENSMMOG00000010216	polr1a	100	77.419	Mola_mola
ENSPREG00000002389	polr1a	100	61.433	ENSMODG00000009335	POLR1A	100	61.697	Monodelphis_domestica
ENSPREG00000002389	polr1a	100	80.877	ENSMALG00000013363	polr1a	100	81.067	Monopterus_albus
ENSPREG00000002389	polr1a	100	64.311	MGP_CAROLIEiJ_G0028494	Polr1a	100	64.195	Mus_caroli
ENSPREG00000002389	polr1a	100	64.311	ENSMUSG00000049553	Polr1a	100	64.311	Mus_musculus
ENSPREG00000002389	polr1a	100	63.065	MGP_PahariEiJ_G0022230	Polr1a	100	64.368	Mus_pahari
ENSPREG00000002389	polr1a	100	63.098	MGP_SPRETEiJ_G0029499	Polr1a	100	63.610	Mus_spretus
ENSPREG00000002389	polr1a	100	64.418	ENSMPUG00000009135	POLR1A	100	65.197	Mustela_putorius_furo
ENSPREG00000002389	polr1a	100	64.669	ENSMLUG00000015723	POLR1A	100	65.551	Myotis_lucifugus
ENSPREG00000002389	polr1a	100	64.910	ENSNGAG00000017907	Polr1a	100	64.910	Nannospalax_galili
ENSPREG00000002389	polr1a	100	81.920	ENSNBRG00000000519	polr1a	100	81.968	Neolamprologus_brichardi
ENSPREG00000002389	polr1a	100	63.689	ENSNLEG00000002264	POLR1A	100	63.552	Nomascus_leucogenys
ENSPREG00000002389	polr1a	75	82.677	ENSMEUG00000011665	-	75	82.677	Notamacropus_eugenii
ENSPREG00000002389	polr1a	97	67.368	ENSOPRG00000008269	POLR1A	95	67.368	Ochotona_princeps
ENSPREG00000002389	polr1a	100	64.658	ENSODEG00000003542	POLR1A	100	64.672	Octodon_degus
ENSPREG00000002389	polr1a	100	81.616	ENSONIG00000015895	polr1a	100	81.510	Oreochromis_niloticus
ENSPREG00000002389	polr1a	100	65.081	ENSOCUG00000010138	POLR1A	100	65.081	Oryctolagus_cuniculus
ENSPREG00000002389	polr1a	100	80.564	ENSORLG00000008753	polr1a	99	80.494	Oryzias_latipes
ENSPREG00000002389	polr1a	100	77.027	ENSORLG00020020726	polr1a	99	76.910	Oryzias_latipes_hni
ENSPREG00000002389	polr1a	95	86.170	ENSORLG00015016071	polr1a	98	86.170	Oryzias_latipes_hsok
ENSPREG00000002389	polr1a	100	64.343	ENSOGAG00000004031	POLR1A	100	64.716	Otolemur_garnettii
ENSPREG00000002389	polr1a	100	64.319	ENSOARG00000020601	POLR1A	100	64.873	Ovis_aries
ENSPREG00000002389	polr1a	100	65.373	ENSPPAG00000042450	POLR1A	100	65.469	Pan_paniscus
ENSPREG00000002389	polr1a	100	65.197	ENSPPRG00000006702	POLR1A	100	65.197	Panthera_pardus
ENSPREG00000002389	polr1a	100	64.798	ENSPTIG00000018783	POLR1A	100	64.798	Panthera_tigris_altaica
ENSPREG00000002389	polr1a	100	64.968	ENSPTRG00000012147	POLR1A	100	65.527	Pan_troglodytes
ENSPREG00000002389	polr1a	100	65.316	ENSPANG00000025908	POLR1A	100	65.353	Papio_anubis
ENSPREG00000002389	polr1a	100	70.492	ENSPKIG00000005468	polr1a	98	72.917	Paramormyrops_kingsleyae
ENSPREG00000002389	polr1a	65	63.871	ENSPSIG00000009321	-	99	64.954	Pelodiscus_sinensis
ENSPREG00000002389	polr1a	54	80.112	ENSPMGG00000009718	polr1a	95	80.112	Periophthalmus_magnuspinnatus
ENSPREG00000002389	polr1a	100	64.716	ENSPEMG00000022224	Polr1a	100	64.600	Peromyscus_maniculatus_bairdii
ENSPREG00000002389	polr1a	95	62.736	ENSPCIG00000004222	POLR1A	99	63.200	Phascolarctos_cinereus
ENSPREG00000002389	polr1a	100	97.404	ENSPFOG00000005025	polr1a	100	97.404	Poecilia_formosa
ENSPREG00000002389	polr1a	100	97.286	ENSPLAG00000021389	polr1a	100	97.286	Poecilia_latipinna
ENSPREG00000002389	polr1a	100	93.235	ENSPMEG00000006463	polr1a	100	93.537	Poecilia_mexicana
ENSPREG00000002389	polr1a	100	65.200	ENSPPYG00000012217	POLR1A	100	65.238	Pongo_abelii
ENSPREG00000002389	polr1a	91	65.070	ENSPCAG00000011582	POLR1A	91	65.070	Procavia_capensis
ENSPREG00000002389	polr1a	100	64.089	ENSPCOG00000026987	POLR1A	100	64.794	Propithecus_coquereli
ENSPREG00000002389	polr1a	95	64.307	ENSPVAG00000012674	POLR1A	95	64.702	Pteropus_vampyrus
ENSPREG00000002389	polr1a	100	82.176	ENSPNYG00000000026	polr1a	100	81.909	Pundamilia_nyererei
ENSPREG00000002389	polr1a	99	75.630	ENSPNAG00000019223	polr1a	100	70.804	Pygocentrus_nattereri
ENSPREG00000002389	polr1a	100	64.368	ENSRNOG00000009545	Polr1a	100	64.600	Rattus_norvegicus
ENSPREG00000002389	polr1a	100	65.006	ENSRBIG00000028335	POLR1A	100	65.527	Rhinopithecus_bieti
ENSPREG00000002389	polr1a	100	65.006	ENSRROG00000031473	POLR1A	100	65.527	Rhinopithecus_roxellana
ENSPREG00000002389	polr1a	95	46.610	YOR341W	RPA190	88	46.610	Saccharomyces_cerevisiae
ENSPREG00000002389	polr1a	100	65.104	ENSSBOG00000030262	POLR1A	100	65.278	Saimiri_boliviensis_boliviensis
ENSPREG00000002389	polr1a	100	59.724	ENSSHAG00000014739	POLR1A	100	59.724	Sarcophilus_harrisii
ENSPREG00000002389	polr1a	100	69.409	ENSSFOG00015019716	polr1a	100	69.674	Scleropages_formosus
ENSPREG00000002389	polr1a	100	80.925	ENSSMAG00000014342	polr1a	100	80.670	Scophthalmus_maximus
ENSPREG00000002389	polr1a	100	83.030	ENSSDUG00000014631	polr1a	100	82.913	Seriola_dumerili
ENSPREG00000002389	polr1a	100	79.543	ENSSLDG00000024095	polr1a	100	79.484	Seriola_lalandi_dorsalis
ENSPREG00000002389	polr1a	71	95.122	ENSSARG00000003136	-	71	95.122	Sorex_araneus
ENSPREG00000002389	polr1a	91	74.457	ENSSPUG00000004215	POLR1A	97	74.457	Sphenodon_punctatus
ENSPREG00000002389	polr1a	64	85.114	ENSSPAG00000016341	polr1a	94	85.114	Stegastes_partitus
ENSPREG00000002389	polr1a	83	66.015	ENSSSCG00000008226	POLR1A	99	66.015	Sus_scrofa
ENSPREG00000002389	polr1a	99	64.386	ENSTGUG00000010704	POLR1A	100	64.529	Taeniopygia_guttata
ENSPREG00000002389	polr1a	100	76.028	ENSTRUG00000002210	polr1a	99	76.381	Takifugu_rubripes
ENSPREG00000002389	polr1a	100	70.578	ENSTNIG00000010116	polr1a	100	70.459	Tetraodon_nigroviridis
ENSPREG00000002389	polr1a	73	80.531	ENSTBEG00000008646	POLR1A	74	80.531	Tupaia_belangeri
ENSPREG00000002389	polr1a	100	62.457	ENSTTRG00000008597	POLR1A	100	62.544	Tursiops_truncatus
ENSPREG00000002389	polr1a	71	65.122	ENSUAMG00000012158	-	94	66.215	Ursus_americanus
ENSPREG00000002389	polr1a	100	73.643	ENSUMAG00000006700	POLR1A	97	68.051	Ursus_maritimus
ENSPREG00000002389	polr1a	100	64.142	ENSVVUG00000001245	POLR1A	100	65.139	Vulpes_vulpes
ENSPREG00000002389	polr1a	100	61.760	ENSXETG00000001952	polr1a	99	63.573	Xenopus_tropicalis
ENSPREG00000002389	polr1a	100	93.651	ENSXMAG00000004032	polr1a	100	93.886	Xiphophorus_maculatus