EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000002652 (Gene tree)
Gene ID: 103458638
Gene Symbol: srrm1
Alias: -
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 11678 bases
Position: chrLG22:13849479-13861156
Accession: 103458638
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000003793	PWI	PF01480.17	1.5e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000003847	-	2520	XM_008399593	ENSPREP00000003793	839 (aa)	XP_008397815	-

Gene Model

Click here to download ENSPREG00000002652's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03013	RNA transport	KEGG
pret03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000002652's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000002652	srrm1	91	76.892	ENSAPOG00000001170	srrm1	99	100.000	Acanthochromis_polyacanthus
ENSPREG00000002652	srrm1	64	86.486	ENSAOCG00000021757	srrm1	68	82.593	Amphiprion_ocellaris
ENSPREG00000002652	srrm1	64	86.486	ENSAPEG00000018964	srrm1	68	81.852	Amphiprion_percula
ENSPREG00000002652	srrm1	86	86.486	ENSDARG00000001244	srrm1	99	96.154	Danio_rerio
ENSPREG00000002652	srrm1	89	69.858	ENSELUG00000003385	srrm1	99	97.436	Esox_lucius
ENSPREG00000002652	srrm1	59	71.893	ENSGACG00000007266	srrm1	85	86.979	Gasterosteus_aculeatus
ENSPREG00000002652	srrm1	57	53.965	ENSOMEG00000014110	srrm1	74	100.000	Oryzias_melastigma
ENSPREG00000002652	srrm1	57	94.888	ENSPLAG00000006807	srrm1	99	100.000	Poecilia_latipinna
ENSPREG00000002652	srrm1	57	94.888	ENSPLAG00000002058	srrm1	100	91.176	Poecilia_latipinna
ENSPREG00000002652	srrm1	57	42.468	ENSSFOG00015024011	srrm1	65	72.348	Scleropages_formosus
ENSPREG00000002652	srrm1	64	89.189	ENSSDUG00000012967	srrm1	68	82.353	Seriola_dumerili
ENSPREG00000002652	srrm1	64	89.189	ENSSLDG00000012771	srrm1	69	82.721	Seriola_lalandi_dorsalis
ENSPREG00000002652	srrm1	100	88.269	ENSXCOG00000011828	srrm1	99	98.739	Xiphophorus_couchianus
ENSPREG00000002652	srrm1	94	91.476	ENSXMAG00000018863	srrm1	94	92.141	Xiphophorus_maculatus