EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPREG00000002695 (Gene tree)
Gene ID: 103482117
Gene Symbol: bms1
Alias: -
Full Name: BMS1%2C ribosome biogenesis factor
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 19495 bases
Position: chrLG19:26901400-26920894
Accession: 103482117
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000003768	AARP2CN	PF08142.12	3.6e-30	1	1
ENSPREP00000003745	AARP2CN	PF08142.12	3.7e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000003800	-	4160	XM_008438068	ENSPREP00000003745	1182 (aa)	XP_008436290	UPI0004A469C2
ENSPRET00000003823	-	4007	XM_008438066	ENSPREP00000003768	1311 (aa)	XP_008436288	-

Gene Model

Click here to download ENSPREG00000002695's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000002695's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000002695	bms1	95	66.667	ENSG00000165733	BMS1	85	67.258	Homo_sapiens
ENSPREG00000002695	bms1	87	78.942	ENSAPOG00000002296	bms1	99	79.037	Acanthochromis_polyacanthus
ENSPREG00000002695	bms1	99	67.040	ENSAMEG00000016834	BMS1	79	74.384	Ailuropoda_melanoleuca
ENSPREG00000002695	bms1	98	77.430	ENSACIG00000002588	bms1	94	82.714	Amphilophus_citrinellus
ENSPREG00000002695	bms1	99	80.197	ENSAOCG00000018088	bms1	99	79.229	Amphiprion_ocellaris
ENSPREG00000002695	bms1	99	80.412	ENSAPEG00000014673	bms1	99	79.259	Amphiprion_percula
ENSPREG00000002695	bms1	99	78.378	ENSATEG00000023465	bms1	99	78.607	Anabas_testudineus
ENSPREG00000002695	bms1	92	67.953	ENSAPLG00000003759	BMS1	84	70.745	Anas_platyrhynchos
ENSPREG00000002695	bms1	99	64.751	ENSACAG00000004537	-	79	74.074	Anolis_carolinensis
ENSPREG00000002695	bms1	95	66.399	ENSANAG00000023432	BMS1	79	74.505	Aotus_nancymaae
ENSPREG00000002695	bms1	99	78.642	ENSACLG00000001294	bms1	99	78.702	Astatotilapia_calliptera
ENSPREG00000002695	bms1	99	66.796	ENSBTAG00000012878	BMS1	85	68.542	Bos_taurus
ENSPREG00000002695	bms1	85	54.271	WBGene00022021	Y61A9LA.10	91	56.593	Caenorhabditis_elegans
ENSPREG00000002695	bms1	95	66.561	ENSCJAG00000021705	BMS1	79	73.515	Callithrix_jacchus
ENSPREG00000002695	bms1	95	67.505	ENSCAFG00000007114	BMS1	79	75.248	Canis_familiaris
ENSPREG00000002695	bms1	95	67.505	ENSCAFG00020025282	BMS1	79	75.248	Canis_lupus_dingo
ENSPREG00000002695	bms1	98	66.990	ENSCHIG00000023251	BMS1	79	76.485	Capra_hircus
ENSPREG00000002695	bms1	99	64.695	ENSCAPG00000008652	BMS1	85	65.208	Cavia_aperea
ENSPREG00000002695	bms1	99	65.649	ENSCPOG00000000502	BMS1	85	66.946	Cavia_porcellus
ENSPREG00000002695	bms1	99	55.951	ENSCCAG00000024969	-	75	57.443	Cebus_capucinus
ENSPREG00000002695	bms1	95	66.667	ENSCATG00000030625	-	79	73.105	Cercocebus_atys
ENSPREG00000002695	bms1	81	55.435	ENSCATG00000008695	-	67	55.928	Cercocebus_atys
ENSPREG00000002695	bms1	95	66.184	ENSCLAG00000002446	BMS1	85	66.942	Chinchilla_lanigera
ENSPREG00000002695	bms1	96	66.825	ENSCSAG00000011118	BMS1	79	73.839	Chlorocebus_sabaeus
ENSPREG00000002695	bms1	98	64.242	ENSCHOG00000011055	BMS1	79	72.861	Choloepus_hoffmanni
ENSPREG00000002695	bms1	96	67.383	ENSCPBG00000025581	BMS1	78	74.939	Chrysemys_picta_bellii
ENSPREG00000002695	bms1	84	61.209	ENSCING00000003181	-	94	62.698	Ciona_intestinalis
ENSPREG00000002695	bms1	80	53.256	ENSCSAVG00000004113	-	88	54.023	Ciona_savignyi
ENSPREG00000002695	bms1	95	67.143	ENSCANG00000011609	BMS1	79	73.350	Colobus_angolensis_palliatus
ENSPREG00000002695	bms1	98	60.832	ENSCGRG00001019461	Bms1	86	67.152	Cricetulus_griseus_chok1gshd
ENSPREG00000002695	bms1	98	60.832	ENSCGRG00000009016	Bms1	85	67.152	Cricetulus_griseus_crigri
ENSPREG00000002695	bms1	52	81.037	ENSCSEG00000002469	bms1	50	80.227	Cynoglossus_semilaevis
ENSPREG00000002695	bms1	99	86.085	ENSCVAG00000008371	bms1	99	86.505	Cyprinodon_variegatus
ENSPREG00000002695	bms1	99	71.160	ENSDARG00000054154	bms1	88	74.798	Danio_rerio
ENSPREG00000002695	bms1	98	64.952	ENSDNOG00000015761	BMS1	79	74.083	Dasypus_novemcinctus
ENSPREG00000002695	bms1	95	67.949	ENSDORG00000002982	Bms1	85	67.903	Dipodomys_ordii
ENSPREG00000002695	bms1	77	71.034	ENSETEG00000009554	BMS1	75	66.071	Echinops_telfairi
ENSPREG00000002695	bms1	94	67.690	ENSEASG00005006894	BMS1	79	74.083	Equus_asinus_asinus
ENSPREG00000002695	bms1	94	67.528	ENSECAG00000001358	BMS1	79	74.083	Equus_caballus
ENSPREG00000002695	bms1	99	71.638	ENSELUG00000001756	bms1	99	71.736	Esox_lucius
ENSPREG00000002695	bms1	99	60.792	ENSFCAG00000011220	BMS1	79	74.631	Felis_catus
ENSPREG00000002695	bms1	99	65.909	ENSFALG00000006882	BMS1	78	74.815	Ficedula_albicollis
ENSPREG00000002695	bms1	99	62.703	ENSFDAG00000001422	BMS1	85	66.667	Fukomys_damarensis
ENSPREG00000002695	bms1	99	86.425	ENSFHEG00000003367	bms1	99	85.570	Fundulus_heteroclitus
ENSPREG00000002695	bms1	98	70.380	ENSGMOG00000000718	bms1	53	75.968	Gadus_morhua
ENSPREG00000002695	bms1	99	65.406	ENSGALG00000002624	BMS1	84	69.579	Gallus_gallus
ENSPREG00000002695	bms1	57	86.944	ENSGAFG00000009067	bms1	96	85.863	Gambusia_affinis
ENSPREG00000002695	bms1	96	82.068	ENSGACG00000015334	bms1	89	81.745	Gasterosteus_aculeatus
ENSPREG00000002695	bms1	97	66.718	ENSGAGG00000003467	BMS1	81	74.634	Gopherus_agassizii
ENSPREG00000002695	bms1	99	79.035	ENSHBUG00000022628	bms1	99	78.750	Haplochromis_burtoni
ENSPREG00000002695	bms1	97	66.400	ENSHGLG00000000477	BMS1	86	66.883	Heterocephalus_glaber_female
ENSPREG00000002695	bms1	97	66.400	ENSHGLG00100002176	BMS1	86	66.883	Heterocephalus_glaber_male
ENSPREG00000002695	bms1	99	77.656	ENSHCOG00000017604	bms1	99	77.106	Hippocampus_comes
ENSPREG00000002695	bms1	99	68.661	ENSIPUG00000017855	bms1	50	76.000	Ictalurus_punctatus
ENSPREG00000002695	bms1	99	66.474	ENSSTOG00000015063	BMS1	85	67.585	Ictidomys_tridecemlineatus
ENSPREG00000002695	bms1	91	71.364	ENSJJAG00000017328	Bms1	85	67.532	Jaculus_jaculus
ENSPREG00000002695	bms1	64	75.969	ENSKMAG00000021982	bms1	97	75.711	Kryptolebias_marmoratus
ENSPREG00000002695	bms1	99	75.783	ENSLBEG00000028208	bms1	99	75.371	Labrus_bergylta
ENSPREG00000002695	bms1	99	58.307	ENSLACG00000001600	BMS1	86	65.546	Latimeria_chalumnae
ENSPREG00000002695	bms1	54	73.404	ENSLOCG00000012914	bms1	97	70.593	Lepisosteus_oculatus
ENSPREG00000002695	bms1	99	64.516	ENSLAFG00000006250	BMS1	79	73.515	Loxodonta_africana
ENSPREG00000002695	bms1	87	64.000	ENSMFAG00000037771	BMS1	88	73.350	Macaca_fascicularis
ENSPREG00000002695	bms1	84	62.753	ENSMMUG00000007426	-	75	62.325	Macaca_mulatta
ENSPREG00000002695	bms1	78	52.838	ENSMLEG00000029084	-	70	58.168	Mandrillus_leucophaeus
ENSPREG00000002695	bms1	99	76.631	ENSMAMG00000020855	bms1	99	76.368	Mastacembelus_armatus
ENSPREG00000002695	bms1	99	78.560	ENSMZEG00005005663	bms1	99	78.619	Maylandia_zebra
ENSPREG00000002695	bms1	90	69.206	ENSMGAG00000001170	BMS1	86	69.579	Meleagris_gallopavo
ENSPREG00000002695	bms1	98	60.832	ENSMAUG00000002195	Bms1	86	66.667	Mesocricetus_auratus
ENSPREG00000002695	bms1	98	64.943	ENSMICG00000009977	BMS1	79	74.505	Microcebus_murinus
ENSPREG00000002695	bms1	98	65.113	ENSMOCG00000002038	Bms1	79	73.350	Microtus_ochrogaster
ENSPREG00000002695	bms1	99	78.392	ENSMMOG00000000977	bms1	99	77.517	Mola_mola
ENSPREG00000002695	bms1	95	67.360	ENSMODG00000001177	BMS1	78	74.510	Monodelphis_domestica
ENSPREG00000002695	bms1	99	78.412	ENSMALG00000009680	bms1	99	78.709	Monopterus_albus
ENSPREG00000002695	bms1	82	58.693	MGP_CAROLIEiJ_G0028785	-	59	77.350	Mus_caroli
ENSPREG00000002695	bms1	94	71.562	ENSMUSG00000030138	Bms1	79	72.616	Mus_musculus
ENSPREG00000002695	bms1	94	66.774	MGP_PahariEiJ_G0022539	Bms1	85	67.045	Mus_pahari
ENSPREG00000002695	bms1	98	59.593	MGP_SPRETEiJ_G0029816	Bms1	79	72.372	Mus_spretus
ENSPREG00000002695	bms1	95	67.891	ENSMPUG00000017276	BMS1	79	74.752	Mustela_putorius_furo
ENSPREG00000002695	bms1	99	62.323	ENSMLUG00000003260	BMS1	80	73.236	Myotis_lucifugus
ENSPREG00000002695	bms1	99	56.593	ENSNGAG00000015258	Bms1	80	67.208	Nannospalax_galili
ENSPREG00000002695	bms1	96	64.922	ENSNLEG00000015791	BMS1	85	67.083	Nomascus_leucogenys
ENSPREG00000002695	bms1	85	76.808	ENSOPRG00000005195	BMS1	77	78.919	Ochotona_princeps
ENSPREG00000002695	bms1	99	63.817	ENSODEG00000005554	BMS1	80	73.594	Octodon_degus
ENSPREG00000002695	bms1	99	79.402	ENSONIG00000007227	bms1	99	78.554	Oreochromis_niloticus
ENSPREG00000002695	bms1	98	66.472	ENSOANG00000000662	-	79	74.877	Ornithorhynchus_anatinus
ENSPREG00000002695	bms1	95	67.524	ENSOCUG00000005354	BMS1	80	74.328	Oryctolagus_cuniculus
ENSPREG00000002695	bms1	99	79.201	ENSORLG00000014655	bms1	99	79.153	Oryzias_latipes
ENSPREG00000002695	bms1	99	76.860	ENSORLG00020016246	bms1	79	77.154	Oryzias_latipes_hni
ENSPREG00000002695	bms1	52	83.955	ENSORLG00015014183	bms1	99	77.409	Oryzias_latipes_hsok
ENSPREG00000002695	bms1	99	79.983	ENSOMEG00000015042	bms1	99	79.813	Oryzias_melastigma
ENSPREG00000002695	bms1	99	60.293	ENSOGAG00000006511	BMS1	79	73.479	Otolemur_garnettii
ENSPREG00000002695	bms1	99	66.474	ENSOARG00000003900	BMS1	80	75.735	Ovis_aries
ENSPREG00000002695	bms1	95	64.176	ENSPPAG00000027837	BMS1	85	66.046	Pan_paniscus
ENSPREG00000002695	bms1	99	60.792	ENSPPRG00000001311	BMS1	79	74.631	Panthera_pardus
ENSPREG00000002695	bms1	99	59.627	ENSPTIG00000009652	BMS1	79	74.631	Panthera_tigris_altaica
ENSPREG00000002695	bms1	95	67.195	ENSPTRG00000002441	BMS1	85	67.633	Pan_troglodytes
ENSPREG00000002695	bms1	95	67.036	ENSPSIG00000006481	BMS1	84	68.211	Pelodiscus_sinensis
ENSPREG00000002695	bms1	98	65.339	ENSPEMG00000022467	Bms1	84	66.042	Peromyscus_maniculatus_bairdii
ENSPREG00000002695	bms1	89	72.184	ENSPCIG00000001339	BMS1	78	73.580	Phascolarctos_cinereus
ENSPREG00000002695	bms1	98	96.552	ENSPFOG00000015180	bms1	100	97.526	Poecilia_formosa
ENSPREG00000002695	bms1	99	97.718	ENSPMEG00000023176	bms1	96	96.831	Poecilia_mexicana
ENSPREG00000002695	bms1	53	63.985	ENSPPYG00000002836	-	66	73.594	Pongo_abelii
ENSPREG00000002695	bms1	72	75.342	ENSPCAG00000014528	BMS1	69	75.342	Procavia_capensis
ENSPREG00000002695	bms1	94	66.094	ENSPCOG00000023834	-	81	73.545	Propithecus_coquereli
ENSPREG00000002695	bms1	99	59.813	ENSPVAG00000000725	BMS1	80	74.074	Pteropus_vampyrus
ENSPREG00000002695	bms1	99	77.961	ENSPNYG00000018866	bms1	90	77.695	Pundamilia_nyererei
ENSPREG00000002695	bms1	53	76.887	ENSPNAG00000000676	bms1	87	77.939	Pygocentrus_nattereri
ENSPREG00000002695	bms1	78	65.105	ENSRNOG00000006576	Bms1	75	72.127	Rattus_norvegicus
ENSPREG00000002695	bms1	97	65.798	ENSRROG00000040101	BMS1	79	69.438	Rhinopithecus_roxellana
ENSPREG00000002695	bms1	70	53.582	YPL217C	-	75	53.295	Saccharomyces_cerevisiae
ENSPREG00000002695	bms1	95	67.203	ENSSBOG00000035778	BMS1	85	67.367	Saimiri_boliviensis_boliviensis
ENSPREG00000002695	bms1	98	64.404	ENSSHAG00000005062	BMS1	78	72.927	Sarcophilus_harrisii
ENSPREG00000002695	bms1	55	76.615	ENSSFOG00015022313	bms1	81	81.481	Scleropages_formosus
ENSPREG00000002695	bms1	60	75.102	ENSSMAG00000019966	bms1	99	75.787	Scophthalmus_maximus
ENSPREG00000002695	bms1	99	79.218	ENSSDUG00000016875	bms1	99	78.973	Seriola_dumerili
ENSPREG00000002695	bms1	99	78.264	ENSSLDG00000015199	bms1	59	78.237	Seriola_lalandi_dorsalis
ENSPREG00000002695	bms1	53	73.000	ENSSARG00000014407	BMS1	66	73.000	Sorex_araneus
ENSPREG00000002695	bms1	97	69.677	ENSSPUG00000014454	BMS1	84	69.628	Sphenodon_punctatus
ENSPREG00000002695	bms1	97	65.951	ENSSSCG00000010198	BMS1	79	74.572	Sus_scrofa
ENSPREG00000002695	bms1	98	66.288	ENSTGUG00000006302	-	84	69.692	Taeniopygia_guttata
ENSPREG00000002695	bms1	99	72.957	ENSTRUG00000008028	bms1	98	73.185	Takifugu_rubripes
ENSPREG00000002695	bms1	99	74.878	ENSTNIG00000006216	bms1	82	81.925	Tetraodon_nigroviridis
ENSPREG00000002695	bms1	65	67.458	ENSTBEG00000001673	-	62	67.466	Tupaia_belangeri
ENSPREG00000002695	bms1	99	60.498	ENSTTRG00000007983	BMS1	77	78.919	Tursiops_truncatus
ENSPREG00000002695	bms1	97	66.306	ENSUAMG00000023996	BMS1	79	74.752	Ursus_americanus
ENSPREG00000002695	bms1	95	67.200	ENSUMAG00000016523	BMS1	79	74.752	Ursus_maritimus
ENSPREG00000002695	bms1	80	69.966	ENSVPAG00000007477	BMS1	80	71.121	Vicugna_pacos
ENSPREG00000002695	bms1	95	67.505	ENSVVUG00000021305	BMS1	81	75.248	Vulpes_vulpes
ENSPREG00000002695	bms1	98	62.153	ENSXETG00000008158	bms1	84	71.675	Xenopus_tropicalis
ENSPREG00000002695	bms1	99	92.054	ENSXCOG00000000506	bms1	97	97.066	Xiphophorus_couchianus
ENSPREG00000002695	bms1	99	96.186	ENSXMAG00000014236	bms1	100	96.186	Xiphophorus_maculatus