EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000003089 (Gene tree)
Gene ID: 103473474
Gene Symbol: mtrex
Alias: julie|mtrex|skiv2l2|wu:fd11a05|zgc:63838
Full Name: Mtr4 exosome RNA helicase
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Plus strand
Length: 17005 bases
Position: chrLG12:9625133-9642137
Accession: 103473474
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000004435	rRNA_proc-arch	PF13234.6	1.9e-88	1	1
ENSPREP00000004390	rRNA_proc-arch	PF13234.6	2e-88	1	1
ENSPREP00000004426	rRNA_proc-arch	PF13234.6	5.8e-88	1	1
ENSPREP00000004426	DEAD	PF00270.29	1.1e-16	1	1
ENSPREP00000004390	DEAD	PF00270.29	1.1e-16	1	1
ENSPREP00000004435	DEAD	PF00270.29	1.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000004451	-	3111	XM_008423759	ENSPREP00000004390	1036 (aa)	XP_008421981	UPI0004A3D44F
ENSPRET00000004488	-	3045	-	ENSPREP00000004426	1014 (aa)	-	-
ENSPRET00000004498	-	3162	-	ENSPREP00000004435	1053 (aa)	-	-

Gene Model

Click here to download ENSPREG00000003089's gene model file

Pathways

Pathway ID	Pathway Name	Source
pret03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000003089's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000003089	mtrex	92	35.404	ENSPREG00000002277	skiv2l	79	35.818

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000003089	mtrex	100	83.222	ENSG00000039123	MTREX	100	83.127	Homo_sapiens
ENSPREG00000003089	mtrex	100	93.732	ENSAPOG00000007814	mtrex	100	93.732	Acanthochromis_polyacanthus
ENSPREG00000003089	mtrex	100	83.143	ENSAMEG00000013856	MTREX	100	83.048	Ailuropoda_melanoleuca
ENSPREG00000003089	mtrex	100	92.315	ENSACIG00000015117	mtrex	100	92.217	Amphilophus_citrinellus
ENSPREG00000003089	mtrex	100	93.925	ENSAOCG00000011884	mtrex	100	93.925	Amphiprion_ocellaris
ENSPREG00000003089	mtrex	100	93.925	ENSAPEG00000019384	mtrex	100	93.925	Amphiprion_percula
ENSPREG00000003089	mtrex	100	93.346	ENSATEG00000015117	mtrex	100	93.346	Anabas_testudineus
ENSPREG00000003089	mtrex	97	85.005	ENSAPLG00000009694	MTREX	100	84.921	Anas_platyrhynchos
ENSPREG00000003089	mtrex	100	84.291	ENSACAG00000015200	MTREX	96	84.211	Anolis_carolinensis
ENSPREG00000003089	mtrex	100	83.317	ENSANAG00000023095	MTREX	100	83.508	Aotus_nancymaae
ENSPREG00000003089	mtrex	100	93.346	ENSACLG00000001921	mtrex	100	93.346	Astatotilapia_calliptera
ENSPREG00000003089	mtrex	95	85.931	ENSAMXG00000018751	mtrex	99	85.830	Astyanax_mexicanus
ENSPREG00000003089	mtrex	100	83.828	ENSBTAG00000010518	MTREX	100	83.317	Bos_taurus
ENSPREG00000003089	mtrex	92	53.887	WBGene00012342	mtr-4	91	53.887	Caenorhabditis_elegans
ENSPREG00000003089	mtrex	100	82.531	ENSCJAG00000001773	MTREX	100	83.033	Callithrix_jacchus
ENSPREG00000003089	mtrex	100	83.317	ENSCAFG00000006818	MTREX	100	83.222	Canis_familiaris
ENSPREG00000003089	mtrex	100	83.317	ENSCAFG00020024352	MTREX	100	83.222	Canis_lupus_dingo
ENSPREG00000003089	mtrex	100	83.317	ENSCHIG00000024413	MTREX	100	83.222	Capra_hircus
ENSPREG00000003089	mtrex	93	84.919	ENSTSYG00000007389	MTREX	100	84.919	Carlito_syrichta
ENSPREG00000003089	mtrex	86	76.027	ENSCAPG00000008696	MTREX	91	76.147	Cavia_aperea
ENSPREG00000003089	mtrex	100	83.889	ENSCPOG00000009797	MTREX	100	83.889	Cavia_porcellus
ENSPREG00000003089	mtrex	100	83.333	ENSCCAG00000014177	MTREX	100	83.508	Cebus_capucinus
ENSPREG00000003089	mtrex	100	83.413	ENSCATG00000042153	MTREX	100	83.317	Cercocebus_atys
ENSPREG00000003089	mtrex	100	83.699	ENSCLAG00000006622	MTREX	100	83.699	Chinchilla_lanigera
ENSPREG00000003089	mtrex	100	79.563	ENSCSAG00000016445	MTREX	100	79.468	Chlorocebus_sabaeus
ENSPREG00000003089	mtrex	69	95.833	ENSCHOG00000010936	-	70	95.833	Choloepus_hoffmanni
ENSPREG00000003089	mtrex	100	84.342	ENSCPBG00000026551	MTREX	94	84.135	Chrysemys_picta_bellii
ENSPREG00000003089	mtrex	99	65.709	ENSCING00000003239	-	99	65.807	Ciona_intestinalis
ENSPREG00000003089	mtrex	99	64.894	ENSCSAVG00000009304	-	100	69.239	Ciona_savignyi
ENSPREG00000003089	mtrex	100	83.317	ENSCANG00000035770	MTREX	100	83.222	Colobus_angolensis_palliatus
ENSPREG00000003089	mtrex	100	83.302	ENSCGRG00001024680	Mtrex	100	83.668	Cricetulus_griseus_chok1gshd
ENSPREG00000003089	mtrex	100	83.302	ENSCGRG00000000307	Mtrex	100	83.668	Cricetulus_griseus_crigri
ENSPREG00000003089	mtrex	100	91.128	ENSCSEG00000018621	mtrex	98	91.128	Cynoglossus_semilaevis
ENSPREG00000003089	mtrex	100	96.042	ENSCVAG00000004556	mtrex	100	96.042	Cyprinodon_variegatus
ENSPREG00000003089	mtrex	100	86.017	ENSDARG00000013457	mtrex	100	85.921	Danio_rerio
ENSPREG00000003089	mtrex	100	83.349	ENSDNOG00000015375	MTREX	100	83.270	Dasypus_novemcinctus
ENSPREG00000003089	mtrex	100	83.572	ENSDORG00000006782	Mtrex	100	83.508	Dipodomys_ordii
ENSPREG00000003089	mtrex	98	62.732	FBgn0001986	Mtr4	97	62.536	Drosophila_melanogaster
ENSPREG00000003089	mtrex	90	68.313	ENSETEG00000000727	MTREX	90	68.313	Echinops_telfairi
ENSPREG00000003089	mtrex	99	73.185	ENSEBUG00000012869	mtrex	99	73.114	Eptatretus_burgeri
ENSPREG00000003089	mtrex	100	83.206	ENSEASG00005013270	MTREX	100	83.413	Equus_asinus_asinus
ENSPREG00000003089	mtrex	100	83.302	ENSECAG00000023723	MTREX	100	88.426	Equus_caballus
ENSPREG00000003089	mtrex	98	76.117	ENSEEUG00000000527	MTREX	100	76.066	Erinaceus_europaeus
ENSPREG00000003089	mtrex	100	85.841	ENSELUG00000004898	mtrex	100	91.396	Esox_lucius
ENSPREG00000003089	mtrex	100	83.413	ENSFCAG00000010575	MTREX	100	83.317	Felis_catus
ENSPREG00000003089	mtrex	100	83.061	ENSFALG00000010850	MTREX	100	83.093	Ficedula_albicollis
ENSPREG00000003089	mtrex	100	83.317	ENSFDAG00000011199	MTREX	100	83.222	Fukomys_damarensis
ENSPREG00000003089	mtrex	100	95.753	ENSFHEG00000023014	mtrex	100	94.444	Fundulus_heteroclitus
ENSPREG00000003089	mtrex	100	85.439	ENSGMOG00000014702	mtrex	100	85.921	Gadus_morhua
ENSPREG00000003089	mtrex	100	83.719	ENSGALG00000014709	MTREX	86	83.622	Gallus_gallus
ENSPREG00000003089	mtrex	100	97.683	ENSGAFG00000012425	mtrex	100	97.683	Gambusia_affinis
ENSPREG00000003089	mtrex	100	86.982	ENSGACG00000016260	mtrex	96	91.394	Gasterosteus_aculeatus
ENSPREG00000003089	mtrex	100	84.038	ENSGAGG00000020036	MTREX	100	83.958	Gopherus_agassizii
ENSPREG00000003089	mtrex	100	83.317	ENSGGOG00000001867	MTREX	100	83.222	Gorilla_gorilla
ENSPREG00000003089	mtrex	100	93.346	ENSHBUG00000006229	mtrex	100	93.346	Haplochromis_burtoni
ENSPREG00000003089	mtrex	100	83.732	ENSHGLG00000019445	SKIV2L2	100	83.413	Heterocephalus_glaber_female
ENSPREG00000003089	mtrex	100	83.732	ENSHGLG00100011833	SKIV2L2	100	83.413	Heterocephalus_glaber_male
ENSPREG00000003089	mtrex	94	89.704	ENSHCOG00000019995	mtrex	100	89.806	Hippocampus_comes
ENSPREG00000003089	mtrex	100	85.852	ENSIPUG00000024348	skiv2l2	100	85.852	Ictalurus_punctatus
ENSPREG00000003089	mtrex	100	83.668	ENSSTOG00000010802	MTREX	100	83.413	Ictidomys_tridecemlineatus
ENSPREG00000003089	mtrex	100	78.866	ENSJJAG00000020975	Mtrex	100	78.770	Jaculus_jaculus
ENSPREG00000003089	mtrex	100	94.305	ENSKMAG00000012642	mtrex	100	94.305	Kryptolebias_marmoratus
ENSPREG00000003089	mtrex	100	92.382	ENSLBEG00000019367	mtrex	100	92.382	Labrus_bergylta
ENSPREG00000003089	mtrex	100	84.615	ENSLACG00000009075	MTREX	100	84.534	Latimeria_chalumnae
ENSPREG00000003089	mtrex	100	86.167	ENSLOCG00000010186	mtrex	100	86.167	Lepisosteus_oculatus
ENSPREG00000003089	mtrex	99	81.202	ENSLAFG00000010497	MTREX	100	81.298	Loxodonta_africana
ENSPREG00000003089	mtrex	100	83.413	ENSMFAG00000031610	MTREX	100	83.317	Macaca_fascicularis
ENSPREG00000003089	mtrex	100	83.080	ENSMMUG00000010379	MTREX	100	83.159	Macaca_mulatta
ENSPREG00000003089	mtrex	100	83.413	ENSMNEG00000032746	MTREX	100	83.317	Macaca_nemestrina
ENSPREG00000003089	mtrex	100	83.413	ENSMLEG00000041051	MTREX	100	83.317	Mandrillus_leucophaeus
ENSPREG00000003089	mtrex	100	92.118	ENSMAMG00000016753	mtrex	98	94.372	Mastacembelus_armatus
ENSPREG00000003089	mtrex	100	93.346	ENSMZEG00005000414	mtrex	100	93.346	Maylandia_zebra
ENSPREG00000003089	mtrex	95	62.298	ENSMGAG00000003980	MTREX	99	62.198	Meleagris_gallopavo
ENSPREG00000003089	mtrex	100	83.397	ENSMAUG00000010727	Mtrex	100	83.317	Mesocricetus_auratus
ENSPREG00000003089	mtrex	100	83.699	ENSMICG00000012779	MTREX	100	83.699	Microcebus_murinus
ENSPREG00000003089	mtrex	100	83.492	ENSMOCG00000019886	Mtrex	100	83.397	Microtus_ochrogaster
ENSPREG00000003089	mtrex	100	90.963	ENSMMOG00000002476	mtrex	100	90.963	Mola_mola
ENSPREG00000003089	mtrex	100	83.846	ENSMODG00000019494	MTREX	100	84.246	Monodelphis_domestica
ENSPREG00000003089	mtrex	100	85.673	ENSMALG00000002917	mtrex	99	89.002	Monopterus_albus
ENSPREG00000003089	mtrex	100	83.732	MGP_CAROLIEiJ_G0018896	Mtrex	100	83.365	Mus_caroli
ENSPREG00000003089	mtrex	100	83.636	ENSMUSG00000016018	Mtrex	100	83.270	Mus_musculus
ENSPREG00000003089	mtrex	100	83.445	MGP_PahariEiJ_G0015967	Mtrex	100	83.078	Mus_pahari
ENSPREG00000003089	mtrex	100	83.636	MGP_SPRETEiJ_G0019775	Mtrex	100	83.270	Mus_spretus
ENSPREG00000003089	mtrex	100	83.413	ENSMPUG00000007619	MTREX	100	83.317	Mustela_putorius_furo
ENSPREG00000003089	mtrex	100	82.952	ENSMLUG00000001152	MTREX	100	82.952	Myotis_lucifugus
ENSPREG00000003089	mtrex	100	83.302	ENSNGAG00000011938	Mtrex	100	83.413	Nannospalax_galili
ENSPREG00000003089	mtrex	100	93.153	ENSNBRG00000011293	mtrex	100	93.153	Neolamprologus_brichardi
ENSPREG00000003089	mtrex	100	79.543	ENSNLEG00000001494	MTREX	100	79.448	Nomascus_leucogenys
ENSPREG00000003089	mtrex	83	94.118	ENSMEUG00000006496	-	83	94.118	Notamacropus_eugenii
ENSPREG00000003089	mtrex	100	70.690	ENSOPRG00000008009	MTREX	100	70.639	Ochotona_princeps
ENSPREG00000003089	mtrex	100	83.222	ENSODEG00000017234	MTREX	100	83.031	Octodon_degus
ENSPREG00000003089	mtrex	100	93.057	ENSONIG00000007587	mtrex	100	93.057	Oreochromis_niloticus
ENSPREG00000003089	mtrex	51	84.109	ENSOANG00000004885	-	99	83.946	Ornithorhynchus_anatinus
ENSPREG00000003089	mtrex	100	84.115	ENSOCUG00000004463	MTREX	100	83.794	Oryctolagus_cuniculus
ENSPREG00000003089	mtrex	100	92.960	ENSORLG00000005443	mtrex	100	92.960	Oryzias_latipes
ENSPREG00000003089	mtrex	100	92.864	ENSORLG00020006329	mtrex	100	92.864	Oryzias_latipes_hni
ENSPREG00000003089	mtrex	100	92.960	ENSORLG00015012924	mtrex	100	92.960	Oryzias_latipes_hsok
ENSPREG00000003089	mtrex	100	92.782	ENSOMEG00000008825	mtrex	100	92.782	Oryzias_melastigma
ENSPREG00000003089	mtrex	100	83.397	ENSOGAG00000002886	MTREX	100	83.508	Otolemur_garnettii
ENSPREG00000003089	mtrex	100	83.080	ENSOARG00000007764	MTREX	100	82.985	Ovis_aries
ENSPREG00000003089	mtrex	100	83.317	ENSPPAG00000039291	MTREX	100	83.222	Pan_paniscus
ENSPREG00000003089	mtrex	100	83.413	ENSPPRG00000019701	MTREX	100	83.317	Panthera_pardus
ENSPREG00000003089	mtrex	100	81.983	ENSPTIG00000009313	MTREX	100	81.888	Panthera_tigris_altaica
ENSPREG00000003089	mtrex	100	83.317	ENSPTRG00000016878	MTREX	100	83.222	Pan_troglodytes
ENSPREG00000003089	mtrex	100	83.317	ENSPANG00000009697	MTREX	100	83.222	Papio_anubis
ENSPREG00000003089	mtrex	100	85.495	ENSPKIG00000020833	mtrex	100	85.303	Paramormyrops_kingsleyae
ENSPREG00000003089	mtrex	100	84.216	ENSPSIG00000012150	MTREX	100	83.877	Pelodiscus_sinensis
ENSPREG00000003089	mtrex	100	89.872	ENSPMGG00000002582	mtrex	100	89.872	Periophthalmus_magnuspinnatus
ENSPREG00000003089	mtrex	95	65.350	ENSPMAG00000009668	mtrex	100	65.248	Petromyzon_marinus
ENSPREG00000003089	mtrex	94	88.340	ENSPCIG00000024730	MTREX	100	88.248	Phascolarctos_cinereus
ENSPREG00000003089	mtrex	77	98.602	ENSPFOG00000003141	mtrex	100	99.111	Poecilia_formosa
ENSPREG00000003089	mtrex	100	99.228	ENSPLAG00000021311	mtrex	100	99.228	Poecilia_latipinna
ENSPREG00000003089	mtrex	95	97.921	ENSPMEG00000010597	mtrex	100	97.921	Poecilia_mexicana
ENSPREG00000003089	mtrex	98	83.140	ENSPPYG00000015469	MTREX	98	83.043	Pongo_abelii
ENSPREG00000003089	mtrex	94	73.023	ENSPCAG00000013120	MTREX	94	73.023	Procavia_capensis
ENSPREG00000003089	mtrex	99	78.407	ENSPCOG00000018092	MTREX	100	78.079	Propithecus_coquereli
ENSPREG00000003089	mtrex	100	83.317	ENSPVAG00000002445	MTREX	100	83.317	Pteropus_vampyrus
ENSPREG00000003089	mtrex	100	93.250	ENSPNYG00000006164	mtrex	100	93.250	Pundamilia_nyererei
ENSPREG00000003089	mtrex	100	87.007	ENSPNAG00000008794	mtrex	100	87.103	Pygocentrus_nattereri
ENSPREG00000003089	mtrex	99	82.802	ENSRNOG00000010125	Mtrex	97	82.705	Rattus_norvegicus
ENSPREG00000003089	mtrex	100	81.602	ENSRBIG00000034930	MTREX	100	81.506	Rhinopithecus_bieti
ENSPREG00000003089	mtrex	100	83.317	ENSRROG00000039895	MTREX	100	83.222	Rhinopithecus_roxellana
ENSPREG00000003089	mtrex	94	53.737	YJL050W	MTR4	92	53.636	Saccharomyces_cerevisiae
ENSPREG00000003089	mtrex	100	83.317	ENSSBOG00000026693	MTREX	100	83.508	Saimiri_boliviensis_boliviensis
ENSPREG00000003089	mtrex	98	84.783	ENSSHAG00000004600	MTREX	99	84.699	Sarcophilus_harrisii
ENSPREG00000003089	mtrex	100	86.526	ENSSFOG00015014355	skiv2l2	100	86.333	Scleropages_formosus
ENSPREG00000003089	mtrex	100	91.996	ENSSMAG00000007572	mtrex	100	91.996	Scophthalmus_maximus
ENSPREG00000003089	mtrex	100	93.635	ENSSDUG00000023789	mtrex	100	93.635	Seriola_dumerili
ENSPREG00000003089	mtrex	100	93.732	ENSSLDG00000006301	mtrex	100	93.732	Seriola_lalandi_dorsalis
ENSPREG00000003089	mtrex	100	81.853	ENSSARG00000008387	MTREX	100	81.888	Sorex_araneus
ENSPREG00000003089	mtrex	89	85.904	ENSSPUG00000007071	MTREX	96	85.904	Sphenodon_punctatus
ENSPREG00000003089	mtrex	100	90.900	ENSSPAG00000011319	mtrex	100	90.430	Stegastes_partitus
ENSPREG00000003089	mtrex	100	83.222	ENSSSCG00000016911	MTREX	100	83.317	Sus_scrofa
ENSPREG00000003089	mtrex	100	82.308	ENSTGUG00000002480	MTREX	100	82.212	Taeniopygia_guttata
ENSPREG00000003089	mtrex	100	90.646	ENSTRUG00000014571	mtrex	100	90.646	Takifugu_rubripes
ENSPREG00000003089	mtrex	100	69.084	ENSTBEG00000007769	MTREX	100	69.113	Tupaia_belangeri
ENSPREG00000003089	mtrex	100	83.541	ENSTTRG00000008678	MTREX	100	83.127	Tursiops_truncatus
ENSPREG00000003089	mtrex	100	83.127	ENSUAMG00000023061	MTREX	100	83.127	Ursus_americanus
ENSPREG00000003089	mtrex	100	83.253	ENSUMAG00000009373	MTREX	99	88.343	Ursus_maritimus
ENSPREG00000003089	mtrex	100	74.261	ENSVPAG00000011174	MTREX	100	74.166	Vicugna_pacos
ENSPREG00000003089	mtrex	100	83.413	ENSVVUG00000021337	MTREX	100	83.413	Vulpes_vulpes
ENSPREG00000003089	mtrex	100	84.778	ENSXETG00000032798	MTREX	100	84.697	Xenopus_tropicalis
ENSPREG00000003089	mtrex	100	97.780	ENSXMAG00000004799	mtrex	100	97.780	Xiphophorus_maculatus