EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPREG00000003343 (Gene tree)
Gene ID: 103482190
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Poecilia_reticulata
Status: putative
Strand: Minus strand
Length: 6805 bases
Position: chrLG19:27790613-27797417
Accession: 103482190
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPREP00000004762	TruB_N	PF01509.18	8e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPRET00000004826	-	4473	XM_008438198	ENSPREP00000004762	277 (aa)	XP_008436420	UPI0004A33E13

Gene Model

Click here to download ENSPREG00000003343's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPREG00000003343's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPREG00000003343	trub1	71	34.500	ENSPREG00000002549	trub2	59	34.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPREG00000003343	trub1	88	66.939	ENSG00000165832	TRUB1	70	66.939	Homo_sapiens
ENSPREG00000003343	trub1	94	82.375	ENSAPOG00000020565	trub1	99	80.220	Acanthochromis_polyacanthus
ENSPREG00000003343	trub1	88	66.802	ENSAMEG00000014931	TRUB1	70	66.802	Ailuropoda_melanoleuca
ENSPREG00000003343	trub1	97	76.952	ENSACIG00000003060	trub1	90	76.952	Amphilophus_citrinellus
ENSPREG00000003343	trub1	94	82.375	ENSAOCG00000017188	trub1	99	80.220	Amphiprion_ocellaris
ENSPREG00000003343	trub1	94	83.525	ENSAPEG00000015209	trub1	99	80.586	Amphiprion_percula
ENSPREG00000003343	trub1	89	84.553	ENSATEG00000023291	trub1	88	84.553	Anabas_testudineus
ENSPREG00000003343	trub1	93	66.279	ENSAPLG00000006808	TRUB1	91	66.279	Anas_platyrhynchos
ENSPREG00000003343	trub1	88	64.634	ENSACAG00000009282	TRUB1	88	64.634	Anolis_carolinensis
ENSPREG00000003343	trub1	88	66.939	ENSANAG00000022870	TRUB1	70	66.939	Aotus_nancymaae
ENSPREG00000003343	trub1	98	81.250	ENSACLG00000000823	trub1	98	81.250	Astatotilapia_calliptera
ENSPREG00000003343	trub1	90	77.108	ENSAMXG00000015845	trub1	83	77.108	Astyanax_mexicanus
ENSPREG00000003343	trub1	88	68.163	ENSBTAG00000012955	TRUB1	70	68.163	Bos_taurus
ENSPREG00000003343	trub1	88	66.939	ENSCJAG00000047815	TRUB1	70	66.939	Callithrix_jacchus
ENSPREG00000003343	trub1	88	67.347	ENSCAFG00000011688	TRUB1	70	67.347	Canis_familiaris
ENSPREG00000003343	trub1	88	67.347	ENSCAFG00020013237	TRUB1	70	67.347	Canis_lupus_dingo
ENSPREG00000003343	trub1	88	67.347	ENSCHIG00000020884	TRUB1	73	67.347	Capra_hircus
ENSPREG00000003343	trub1	88	66.122	ENSTSYG00000000446	TRUB1	70	66.122	Carlito_syrichta
ENSPREG00000003343	trub1	76	60.190	ENSCAPG00000017088	TRUB1	82	60.190	Cavia_aperea
ENSPREG00000003343	trub1	68	65.079	ENSCPOG00000040236	-	77	65.079	Cavia_porcellus
ENSPREG00000003343	trub1	69	64.062	ENSCPOG00000030129	-	74	64.062	Cavia_porcellus
ENSPREG00000003343	trub1	92	65.116	ENSCCAG00000028842	TRUB1	70	66.939	Cebus_capucinus
ENSPREG00000003343	trub1	88	66.939	ENSCATG00000033431	TRUB1	70	66.939	Cercocebus_atys
ENSPREG00000003343	trub1	66	65.027	ENSCLAG00000008664	TRUB1	75	65.027	Chinchilla_lanigera
ENSPREG00000003343	trub1	88	66.939	ENSCSAG00000004891	TRUB1	70	66.939	Chlorocebus_sabaeus
ENSPREG00000003343	trub1	88	59.671	ENSCHOG00000011931	TRUB1	70	59.671	Choloepus_hoffmanni
ENSPREG00000003343	trub1	88	70.204	ENSCPBG00000003051	TRUB1	84	70.204	Chrysemys_picta_bellii
ENSPREG00000003343	trub1	88	66.939	ENSCANG00000029445	TRUB1	70	66.939	Colobus_angolensis_palliatus
ENSPREG00000003343	trub1	86	58.403	ENSCGRG00001010322	-	70	55.769	Cricetulus_griseus_chok1gshd
ENSPREG00000003343	trub1	77	67.453	ENSCGRG00001016772	-	71	67.290	Cricetulus_griseus_chok1gshd
ENSPREG00000003343	trub1	86	65.966	ENSCGRG00000010806	Trub1	81	63.396	Cricetulus_griseus_crigri
ENSPREG00000003343	trub1	91	78.261	ENSCSEG00000011261	trub1	82	78.261	Cynoglossus_semilaevis
ENSPREG00000003343	trub1	92	84.706	ENSCVAG00000008791	trub1	78	84.706	Cyprinodon_variegatus
ENSPREG00000003343	trub1	96	70.522	ENSDARG00000053805	trub1	99	82.353	Danio_rerio
ENSPREG00000003343	trub1	88	64.898	ENSDNOG00000001069	TRUB1	70	64.898	Dasypus_novemcinctus
ENSPREG00000003343	trub1	86	66.387	ENSDORG00000010431	Trub1	71	66.122	Dipodomys_ordii
ENSPREG00000003343	trub1	65	64.964	ENSETEG00000009183	TRUB1	59	64.286	Echinops_telfairi
ENSPREG00000003343	trub1	88	66.531	ENSEASG00005014739	TRUB1	70	66.531	Equus_asinus_asinus
ENSPREG00000003343	trub1	88	66.531	ENSECAG00000007177	TRUB1	70	66.531	Equus_caballus
ENSPREG00000003343	trub1	88	58.776	ENSEEUG00000013993	TRUB1	68	58.776	Erinaceus_europaeus
ENSPREG00000003343	trub1	94	77.395	ENSELUG00000000502	trub1	91	77.395	Esox_lucius
ENSPREG00000003343	trub1	88	67.347	ENSFCAG00000031927	TRUB1	70	67.347	Felis_catus
ENSPREG00000003343	trub1	78	69.767	ENSFALG00000002232	TRUB1	83	69.767	Ficedula_albicollis
ENSPREG00000003343	trub1	66	66.667	ENSFDAG00000008140	TRUB1	82	62.687	Fukomys_damarensis
ENSPREG00000003343	trub1	99	86.909	ENSFHEG00000004016	trub1	95	86.909	Fundulus_heteroclitus
ENSPREG00000003343	trub1	89	66.802	ENSGALG00000009091	TRUB1	87	66.802	Gallus_gallus
ENSPREG00000003343	trub1	92	92.607	ENSGAFG00000009193	trub1	90	92.607	Gambusia_affinis
ENSPREG00000003343	trub1	71	85.714	ENSGACG00000015387	trub1	96	85.714	Gasterosteus_aculeatus
ENSPREG00000003343	trub1	88	70.204	ENSGAGG00000009758	TRUB1	70	70.204	Gopherus_agassizii
ENSPREG00000003343	trub1	88	66.939	ENSGGOG00000004583	TRUB1	70	66.939	Gorilla_gorilla
ENSPREG00000003343	trub1	98	80.882	ENSHBUG00000016787	trub1	98	80.882	Haplochromis_burtoni
ENSPREG00000003343	trub1	88	65.306	ENSHGLG00000015314	TRUB1	70	65.306	Heterocephalus_glaber_female
ENSPREG00000003343	trub1	66	66.120	ENSHGLG00100009183	TRUB1	77	66.120	Heterocephalus_glaber_male
ENSPREG00000003343	trub1	100	79.137	ENSHCOG00000017877	trub1	100	79.137	Hippocampus_comes
ENSPREG00000003343	trub1	91	75.889	ENSIPUG00000017559	trub1	89	75.889	Ictalurus_punctatus
ENSPREG00000003343	trub1	88	66.939	ENSSTOG00000003641	TRUB1	73	66.939	Ictidomys_tridecemlineatus
ENSPREG00000003343	trub1	88	66.122	ENSJJAG00000011800	Trub1	72	66.122	Jaculus_jaculus
ENSPREG00000003343	trub1	100	80.935	ENSKMAG00000006232	trub1	100	80.935	Kryptolebias_marmoratus
ENSPREG00000003343	trub1	98	79.779	ENSLBEG00000026722	trub1	95	79.779	Labrus_bergylta
ENSPREG00000003343	trub1	93	71.705	ENSLACG00000014885	TRUB1	86	71.705	Latimeria_chalumnae
ENSPREG00000003343	trub1	94	74.615	ENSLOCG00000012979	trub1	88	74.615	Lepisosteus_oculatus
ENSPREG00000003343	trub1	90	66.667	ENSLAFG00000015452	TRUB1	72	66.667	Loxodonta_africana
ENSPREG00000003343	trub1	88	66.939	ENSMFAG00000031767	TRUB1	70	66.939	Macaca_fascicularis
ENSPREG00000003343	trub1	88	66.939	ENSMMUG00000001902	TRUB1	70	66.939	Macaca_mulatta
ENSPREG00000003343	trub1	88	61.224	ENSMNEG00000044646	TRUB1	69	61.224	Macaca_nemestrina
ENSPREG00000003343	trub1	88	66.939	ENSMLEG00000042655	TRUB1	70	66.939	Mandrillus_leucophaeus
ENSPREG00000003343	trub1	98	81.250	ENSMZEG00005024095	trub1	98	81.250	Maylandia_zebra
ENSPREG00000003343	trub1	89	67.206	ENSMGAG00000011135	TRUB1	85	67.206	Meleagris_gallopavo
ENSPREG00000003343	trub1	86	63.866	ENSMAUG00000011101	Trub1	72	63.673	Mesocricetus_auratus
ENSPREG00000003343	trub1	88	66.531	ENSMICG00000016324	TRUB1	70	66.531	Microcebus_murinus
ENSPREG00000003343	trub1	86	66.946	ENSMOCG00000017759	Trub1	74	66.667	Microtus_ochrogaster
ENSPREG00000003343	trub1	88	68.033	ENSMODG00000009676	TRUB1	70	66.667	Monodelphis_domestica
ENSPREG00000003343	trub1	88	66.532	MGP_CAROLIEiJ_G0023100	Trub1	76	67.380	Mus_caroli
ENSPREG00000003343	trub1	88	65.726	ENSMUSG00000025086	Trub1	76	66.310	Mus_musculus
ENSPREG00000003343	trub1	90	65.476	MGP_PahariEiJ_G0014588	Trub1	75	65.476	Mus_pahari
ENSPREG00000003343	trub1	88	65.726	MGP_SPRETEiJ_G0024021	Trub1	76	66.310	Mus_spretus
ENSPREG00000003343	trub1	88	67.347	ENSMPUG00000003556	TRUB1	70	67.347	Mustela_putorius_furo
ENSPREG00000003343	trub1	88	66.122	ENSMLUG00000017686	TRUB1	72	66.122	Myotis_lucifugus
ENSPREG00000003343	trub1	88	66.531	ENSNGAG00000018682	Trub1	70	66.531	Nannospalax_galili
ENSPREG00000003343	trub1	92	82.745	ENSNBRG00000023393	trub1	91	82.745	Neolamprologus_brichardi
ENSPREG00000003343	trub1	88	66.939	ENSNLEG00000016345	TRUB1	70	66.939	Nomascus_leucogenys
ENSPREG00000003343	trub1	73	70.647	ENSMEUG00000006603	TRUB1	77	68.900	Notamacropus_eugenii
ENSPREG00000003343	trub1	88	66.122	ENSOPRG00000009371	TRUB1	71	66.122	Ochotona_princeps
ENSPREG00000003343	trub1	88	64.898	ENSODEG00000010854	TRUB1	70	64.898	Octodon_degus
ENSPREG00000003343	trub1	97	80.669	ENSONIG00000007249	trub1	98	80.669	Oreochromis_niloticus
ENSPREG00000003343	trub1	90	67.742	ENSOANG00000001556	TRUB1	85	66.537	Ornithorhynchus_anatinus
ENSPREG00000003343	trub1	88	66.531	ENSOCUG00000009456	TRUB1	71	66.531	Oryctolagus_cuniculus
ENSPREG00000003343	trub1	98	80.220	ENSORLG00000029719	trub1	98	80.220	Oryzias_latipes
ENSPREG00000003343	trub1	98	79.853	ENSORLG00020016767	trub1	96	79.853	Oryzias_latipes_hni
ENSPREG00000003343	trub1	98	79.121	ENSORLG00015014728	trub1	98	79.121	Oryzias_latipes_hsok
ENSPREG00000003343	trub1	94	81.226	ENSOMEG00000014556	trub1	92	81.226	Oryzias_melastigma
ENSPREG00000003343	trub1	88	66.939	ENSOGAG00000015895	TRUB1	70	66.939	Otolemur_garnettii
ENSPREG00000003343	trub1	88	65.476	ENSOARG00000015591	TRUB1	77	63.235	Ovis_aries
ENSPREG00000003343	trub1	88	66.939	ENSPPAG00000043645	TRUB1	70	66.939	Pan_paniscus
ENSPREG00000003343	trub1	88	66.939	ENSPPRG00000007096	TRUB1	70	66.939	Panthera_pardus
ENSPREG00000003343	trub1	88	66.939	ENSPTIG00000006378	TRUB1	70	66.939	Panthera_tigris_altaica
ENSPREG00000003343	trub1	88	66.939	ENSPTRG00000002964	TRUB1	70	66.939	Pan_troglodytes
ENSPREG00000003343	trub1	88	66.939	ENSPANG00000020712	TRUB1	70	66.939	Papio_anubis
ENSPREG00000003343	trub1	62	78.363	ENSPKIG00000003852	trub1	74	78.363	Paramormyrops_kingsleyae
ENSPREG00000003343	trub1	93	67.816	ENSPSIG00000012877	TRUB1	90	67.816	Pelodiscus_sinensis
ENSPREG00000003343	trub1	96	74.906	ENSPMGG00000000075	trub1	94	74.906	Periophthalmus_magnuspinnatus
ENSPREG00000003343	trub1	94	63.636	ENSPEMG00000011156	Trub1	78	63.636	Peromyscus_maniculatus_bairdii
ENSPREG00000003343	trub1	88	68.033	ENSPCIG00000009729	TRUB1	69	66.409	Phascolarctos_cinereus
ENSPREG00000003343	trub1	99	97.436	ENSPFOG00000009950	trub1	100	97.436	Poecilia_formosa
ENSPREG00000003343	trub1	100	97.112	ENSPLAG00000013855	trub1	97	97.112	Poecilia_latipinna
ENSPREG00000003343	trub1	100	97.112	ENSPMEG00000009064	trub1	100	97.112	Poecilia_mexicana
ENSPREG00000003343	trub1	88	66.531	ENSPPYG00000002676	TRUB1	70	66.531	Pongo_abelii
ENSPREG00000003343	trub1	95	59.023	ENSPCAG00000008427	TRUB1	74	59.023	Procavia_capensis
ENSPREG00000003343	trub1	88	60.816	ENSPCOG00000024360	TRUB1	68	60.816	Propithecus_coquereli
ENSPREG00000003343	trub1	73	69.307	ENSPVAG00000007575	TRUB1	77	69.307	Pteropus_vampyrus
ENSPREG00000003343	trub1	98	81.250	ENSPNYG00000018614	trub1	98	81.250	Pundamilia_nyererei
ENSPREG00000003343	trub1	98	63.838	ENSPNAG00000006881	trub1	86	63.838	Pygocentrus_nattereri
ENSPREG00000003343	trub1	90	64.683	ENSRNOG00000017321	Trub1	74	64.683	Rattus_norvegicus
ENSPREG00000003343	trub1	88	57.895	ENSRBIG00000033423	TRUB1	68	57.895	Rhinopithecus_bieti
ENSPREG00000003343	trub1	88	66.939	ENSRROG00000033902	TRUB1	70	66.939	Rhinopithecus_roxellana
ENSPREG00000003343	trub1	88	66.939	ENSSBOG00000024237	TRUB1	70	66.939	Saimiri_boliviensis_boliviensis
ENSPREG00000003343	trub1	77	69.302	ENSSHAG00000009346	TRUB1	72	69.302	Sarcophilus_harrisii
ENSPREG00000003343	trub1	95	76.515	ENSSFOG00015022124	trub1	90	76.515	Scleropages_formosus
ENSPREG00000003343	trub1	96	82.836	ENSSMAG00000001020	trub1	95	82.836	Scophthalmus_maximus
ENSPREG00000003343	trub1	97	81.041	ENSSDUG00000016414	trub1	97	83.643	Seriola_dumerili
ENSPREG00000003343	trub1	97	80.669	ENSSLDG00000015486	trub1	97	83.271	Seriola_lalandi_dorsalis
ENSPREG00000003343	trub1	94	67.681	ENSSPUG00000001642	TRUB1	90	67.681	Sphenodon_punctatus
ENSPREG00000003343	trub1	100	80.216	ENSSPAG00000001217	trub1	100	80.216	Stegastes_partitus
ENSPREG00000003343	trub1	90	66.270	ENSSSCG00000010653	TRUB1	73	66.270	Sus_scrofa
ENSPREG00000003343	trub1	88	68.443	ENSTGUG00000010971	TRUB1	91	66.667	Taeniopygia_guttata
ENSPREG00000003343	trub1	76	58.294	ENSTBEG00000002880	TRUB1	83	58.294	Tupaia_belangeri
ENSPREG00000003343	trub1	73	68.812	ENSTTRG00000005767	TRUB1	77	68.812	Tursiops_truncatus
ENSPREG00000003343	trub1	88	67.347	ENSUAMG00000024876	TRUB1	70	67.347	Ursus_americanus
ENSPREG00000003343	trub1	88	67.347	ENSUMAG00000002411	TRUB1	76	65.637	Ursus_maritimus
ENSPREG00000003343	trub1	88	67.347	ENSVPAG00000005507	TRUB1	70	67.347	Vicugna_pacos
ENSPREG00000003343	trub1	88	67.347	ENSVVUG00000010085	TRUB1	59	67.347	Vulpes_vulpes
ENSPREG00000003343	trub1	88	68.571	ENSXETG00000023828	trub1	88	68.571	Xenopus_tropicalis
ENSPREG00000003343	trub1	90	94.000	ENSXCOG00000017847	trub1	88	94.000	Xiphophorus_couchianus
ENSPREG00000003343	trub1	100	94.224	ENSXMAG00000014701	trub1	100	94.224	Xiphophorus_maculatus